Rh2BG010500

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008822
Physical Location & Seq
Forward (+)
751060 .. 754956
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG010500.1

Sequence Viewer

Length: 1515 bp
ATGCAGCTTGAGGTCTGTCTTGCTTGGGGATCAAGCCCTTTCTTCAAAAGCTGTGGTTCTGTTTCAGTTATACCATTAACCAGGTCTTTAGTATTAAATGGCTCTCTTTACGTACTGTGTATAAGTGTTTTGCTGCAGGCTAAACCCAACCCAAACCTTTCTGGACTGAAGCGGAAAAAACTACCATCAGAGGGCGCTAATGAGATTTATCAATATCGTTTGAAGAAGAAGAAGATACCGAAGGAGGAATTGAAGAAGAAGAAGATACCGAAGGAGGAATGGAGTTGTGCTCTGTGTCAGGTTACTGTAGCAAATGAGAAAATGTTTGATGGTCACCTTAATGGCAAGAGGCACAAGGCCAGCGAAAAAAGACTTGGAGCTGAAAAACTGGGAAAGAGCTCCAGTAATGCACCACTTTCAAAGAACACTGCAAAACCTTTTGAGCCTAAAGAGTTAGAGACCACTGGTGCTGCAAGCTCACAATTAGGGGCCAAAGAAGAAAGGGGTTTGCTTGACCATAATGAAGCCGGTGATGGTTCAGACAAGAAAATGCAGGATACAGACACTTCAGAAGAGAAAAAAGTGGAGCTGCCAGTGCAGAAAGACCAATGCGGAGAGGATTTGAAGAACAATGTTGAAGTAAAAAAGGTGCACATGATGCAGAGAAAGGAAGAACCAACAAAAACAAAGAAATTTGAGTTCCTATGTGAAATTTGTAAAGTTGGTAGCAACAATCCAAAGGTGATGGAGAAGCATAGTAGGGCGAAGAAGCATATGGATAGGCTTACGGAACTAAAAAAGAATAAAGTTCGAACCACCAACGAAGCAAATGTGAACACTCCCACCACAAAGTCTGTGGCATCATCAGGGGCTACGCAGGAGGCAGTAAAGAGGCTTCAGCAAGACACAGAGAACAGTTTTGTACCCACCAATGTGATTAAAGAAGCAAACGTGAGCATTCCAACCACAATTGCTGTGGCATCATTGGTGGTTAATGAGAAGGCAGAAAATGCTAGGCTGCAGGAATCTATTAATGTGACCAAAGAAGCAAATGTGAGCACTCCCACCACAAATTCTGCGGCATCATCAGGGGCTACGCAGGAGGCAGTAAAAAGGCTTCAGCAAGATACAAAGAATAGTGTTGCACCTGCTAATGTGACCAAAGAAGCAAATGCGAGCATTCCAGTCACGATTGCTGTGGCATCATTGAGGGCTACTGGGAAGGCAGAAACTGCTAGGCTGCAGGAATCTGCTGATGTGACCAAAGAAGCAAATGTGAGCATTCCAACAGCAGCAGCCGTGACATCATGGGGAGCTAGTGAGGAGACAGAAACTGCTAGGCTGCTTGAGGAATCTATAAAGAATAATACCACTAATGTGACCACAGAAGCAAATGCCAACATGCAAAGCACAACCTCAATTGCCGTGGAATCATTCTGGTTTACTGAGACGGCTGAAAATTTGAGGAAATTGGAGGCTTATGAAAAGTTGATCAAAGCAAGGTTAACTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

504

Amino Acids

55.06

Weight (kDa)

9.17

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 94 - 118 1.1e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1156
Acc36I ACCTGC 1 cut(s) 1156
AciI CCGC 3 cut(s) 172, 612, 1079
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 4 cut(s) 692, 711, 1072, 1459
AcuI CTGAAG 4 cut(s) 188, 552, 881, 1103
AfaI GTAC 2 cut(s) 114, 924
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 6 cut(s) 46, 223, 253, 420, 625, 638
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AleI CACNNNNGTG 2 cut(s) 932, 1376
AluBI AGCT 7 cut(s) 7, 51, 380, 399, 477, 589, 1316
AluI AGCT 7 cut(s) 7, 51, 380, 399, 477, 589, 1316
Alw21I GWGCWC 4 cut(s) 292, 401, 654, 1061
Alw26I GTCTC 3 cut(s) 452, 1319, 1442
Alw44I GTGCAC 1 cut(s) 650
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 2 cut(s) 1232, 1334
AoxI GGCC 2 cut(s) 357, 489
ApaLI GTGCAC 1 cut(s) 650
ApeKI GCWGC 9 cut(s) 4, 133, 470, 589, 1018, 1240, 1292, 1295, 1342
ApoI RAATTY 4 cut(s) 692, 711, 1072, 1459
AseI ATTAAT 1 cut(s) 1032
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 3 cut(s) 326, 542, 754
AsuII TTCGAA 1 cut(s) 811
BaeGI GKGCMC 1 cut(s) 654
BanII GRGCYC 1 cut(s) 401
BarI GAAGNNNNNNTAC 4 cut(s) 879, 911, 1101, 1133
Bbv12I GWGCWC 4 cut(s) 292, 401, 654, 1061
BbvI GCAGC 9 cut(s) 16, 120, 457, 576, 1005, 1227, 1304, 1307, 1329
BccI CCATC 4 cut(s) 193, 323, 527, 739
BceAI ACGGC 3 cut(s) 1283, 1409, 1467
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 550
BclI TGATCA 1 cut(s) 1491
BcoDI GTCTC 3 cut(s) 452, 1319, 1442
BfaI CTAG 4 cut(s) 1014, 1236, 1317, 1338
BfmI CTRYAG 4 cut(s) 134, 306, 1019, 1241
BfoI RGCGCY 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 1156
BfuI GTATCC 1 cut(s) 550
Bme1390I CCNGG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 82
BmrI ACTGGG 2 cut(s) 398, 1227
BmsI GCATC 5 cut(s) 648, 869, 989, 1091, 1211
BmuI ACTGGG 2 cut(s) 398, 1227
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 385
Bpu14I TTCGAA 1 cut(s) 811
BpuEI CTTGAG 2 cut(s) 29, 1367
BsaAI YACGTR 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 1425
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 7 cut(s) 393, 402, 469, 593, 1184, 1222, 1513
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 1425
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 1437
BseNI ACTGG 7 cut(s) 393, 402, 469, 593, 1184, 1222, 1513
BseRI GAGGAG 1 cut(s) 1337
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 9 cut(s) 16, 120, 457, 576, 1005, 1227, 1304, 1307, 1329
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 2 cut(s) 359, 491
BsiHKAI GWGCWC 4 cut(s) 292, 401, 654, 1061
BsiSI CCGG 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 3 cut(s) 452, 1319, 1442
BsmBI CGTCTC 1 cut(s) 1442
BsmI GAATGC 3 cut(s) 957, 1179, 1281
BsnI GGCC 2 cut(s) 359, 491
Bso31I GGTCTC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 811
Bsp1286I GDGCHC 4 cut(s) 292, 401, 654, 1061
Bsp143I GATC 2 cut(s) 29, 1491
BspACI CCGC 3 cut(s) 172, 612, 1079
BspANI GGCC 2 cut(s) 359, 491
BspCNI CTCAG 1 cut(s) 1438
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 3 cut(s) 138, 1023, 1245
BspMI ACCTGC 1 cut(s) 1156
BspPI GGATC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 811
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 7 cut(s) 393, 402, 469, 593, 1184, 1222, 1513
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 1425
BssMI GATC 2 cut(s) 29, 1491
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 3 cut(s) 117, 307, 917
Bst6I CTCTTC 1 cut(s) 567
BstAPI GCANNNNNTGC 3 cut(s) 658, 1010, 1232
BstBAI YACGTR 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 811
BstC8I GCNNGC 4 cut(s) 138, 361, 475, 1177
BstDEI CTNAG 1 cut(s) 1446
BstDSI CCRYGG 1 cut(s) 1425
BstEII GGTNACC 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 32, 1494
BstMAI GTCTC 3 cut(s) 452, 1319, 1442
BstMBI GATC 2 cut(s) 29, 1491
BstMWI GCNNNNNNNGC 4 cut(s) 595, 658, 1010, 1232
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 1405
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 4 cut(s) 134, 306, 1019, 1241
BstSLI GKGCMC 1 cut(s) 654
BstSNI TACGTA 1 cut(s) 112
BstV1I GCAGC 9 cut(s) 16, 120, 457, 576, 1005, 1227, 1304, 1307, 1329
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 359, 491
BtgI CCRYGG 1 cut(s) 1425
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 426, 462, 600
BveI ACCTGC 1 cut(s) 1156
Cac8I GCNNGC 4 cut(s) 138, 361, 475, 1177
CaiI CAGNNNCTG 2 cut(s) 1232, 1334
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 489
CsiI ACCWGGT 1 cut(s) 80
Csp6I GTAC 2 cut(s) 113, 923
CspCI CAANNNNNGTGG 8 cut(s) 34, 69, 837, 872, 957, 992, 1407, 1442
CviAII CATG 3 cut(s) 655, 1308, 1402
CviQI GTAC 2 cut(s) 113, 923
DdeI CTNAG 1 cut(s) 1446
DpnI GATC 2 cut(s) 31, 1493
DpnII GATC 2 cut(s) 29, 1491
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Ecl136II GAGCTC 1 cut(s) 399
Eco105I TACGTA 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 399
Eco57I CTGAAG 4 cut(s) 188, 552, 881, 1103
Eco91I GGTNACC 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 399
EcoO65I GGTNACC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 401
Esp3I CGTCTC 1 cut(s) 1442
FaeI CATG 3 cut(s) 658, 1311, 1405
FatI CATG 3 cut(s) 654, 1307, 1401
FauNDI CATATG 1 cut(s) 774
FbaI TGATCA 1 cut(s) 1491
FriOI GRGCYC 1 cut(s) 401
FspBI CTAG 4 cut(s) 1014, 1236, 1317, 1338
GlaI GCGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 385
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 2 cut(s) 359, 491
HapII CCGG 1 cut(s) 528
HhaI GCGC 1 cut(s) 197
Hin1II CATG 3 cut(s) 658, 1311, 1405
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 1506
HindII GTYRAC 1 cut(s) 1506
HinfI GANTC 4 cut(s) 1025, 1247, 1352, 1430
HpaI GTTAAC 1 cut(s) 1506
HpaII CCGG 1 cut(s) 528
HphI GGTGA 3 cut(s) 326, 542, 754
Hpy166II GTNNAC 4 cut(s) 652, 835, 1443, 1506
Hpy188I TCNGA 3 cut(s) 190, 541, 571
Hpy188III TCNNGA 2 cut(s) 162, 1189
Hpy8I GTNNAC 4 cut(s) 652, 835, 1443, 1506
HpyAV CCTTC 4 cut(s) 235, 265, 994, 1216
HpyCH4III ACNGT 3 cut(s) 117, 307, 917
HpyCH4IV ACGT 2 cut(s) 111, 951
HpyF10VI GCNNNNNNNGC 4 cut(s) 595, 658, 1010, 1232
HpyF3I CTNAG 1 cut(s) 1446
HpySE526I ACGT 2 cut(s) 111, 951
Hsp92II CATG 3 cut(s) 658, 1311, 1405
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 1491
KspAI GTTAAC 1 cut(s) 1506
Kzo9I GATC 2 cut(s) 29, 1491
LmnI GCTCC 4 cut(s) 377, 404, 586, 1313
Lsp1109I GCAGC 9 cut(s) 16, 120, 457, 576, 1005, 1227, 1304, 1307, 1329
LweI GCATC 5 cut(s) 648, 869, 989, 1091, 1211
MabI ACCWGGT 1 cut(s) 80
MaeI CTAG 4 cut(s) 1014, 1236, 1317, 1338
MaeII ACGT 2 cut(s) 111, 951
MaeIII GTNAC 8 cut(s) 301, 332, 1036, 1156, 1186, 1258, 1300, 1378
MalI GATC 2 cut(s) 31, 1493
MboI GATC 2 cut(s) 29, 1491
MfeI CAATTG 2 cut(s) 969, 1419
MhlI GDGCHC 4 cut(s) 292, 401, 654, 1061
MluCI AATT 9 cut(s) 248, 482, 692, 711, 969, 1072, 1419, 1459, 1469
MmeI TCCRAC 2 cut(s) 986, 1310
MseI TTAA 7 cut(s) 77, 95, 339, 939, 993, 1032, 1505
MslI CAYNNNNRTG 3 cut(s) 339, 932, 1376
MspI CCGG 1 cut(s) 528
MspR9I CCNGG 1 cut(s) 82
MunI CAATTG 2 cut(s) 969, 1419
Mva1269I GAATGC 3 cut(s) 957, 1179, 1281
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 4 cut(s) 595, 658, 1010, 1232
NdeI CATATG 1 cut(s) 774
NdeII GATC 2 cut(s) 29, 1491
NlaIII CATG 3 cut(s) 658, 1311, 1405
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 7 cut(s) 332, 1036, 1156, 1186, 1258, 1300, 1378
NspI RCATGY 1 cut(s) 1405
NspV TTCGAA 1 cut(s) 811
OliI CACNNNNGTG 2 cut(s) 932, 1376
PaqCI CACCTGC 1 cut(s) 1156
PctI GAATGC 3 cut(s) 957, 1179, 1281
PfeI GAWTC 4 cut(s) 1025, 1247, 1352, 1430
Ppu21I YACGTR 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 1032
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 3 cut(s) 138, 1023, 1245
PstNI CAGNNNCTG 2 cut(s) 1232, 1334
RsaI GTAC 2 cut(s) 114, 924
RsaNI GTAC 2 cut(s) 113, 923
RseI CAYNNNNRTG 3 cut(s) 339, 932, 1376
SacI GAGCTC 1 cut(s) 401
SaqAI TTAA 7 cut(s) 77, 95, 339, 939, 993, 1032, 1505
Sau3AI GATC 2 cut(s) 29, 1491
Sau96I GGNCC 1 cut(s) 489
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 4 cut(s) 292, 401, 654, 1061
SexAI ACCWGGT 1 cut(s) 80
SfaNI GCATC 5 cut(s) 648, 869, 989, 1091, 1211
SfcI CTRYAG 4 cut(s) 134, 306, 1019, 1241
SfuI TTCGAA 1 cut(s) 811
SmiMI CAYNNNNRTG 3 cut(s) 339, 932, 1376
SmlI CTYRAG 2 cut(s) 8, 1346
SmoI CTYRAG 2 cut(s) 8, 1346
SnaBI TACGTA 1 cut(s) 112
Sse9I AATT 9 cut(s) 248, 482, 692, 711, 969, 1072, 1419, 1459, 1469
SsiI CCGC 3 cut(s) 172, 612, 1079
SspMI CTAG 4 cut(s) 1014, 1236, 1317, 1338
SstI GAGCTC 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 3 cut(s) 117, 307, 917
TaiI ACGT 2 cut(s) 114, 954
TaqI TCGA 1 cut(s) 811
TasI AATT 9 cut(s) 248, 482, 692, 711, 969, 1072, 1419, 1459, 1469
TauI GCSGC 1 cut(s) 1082
TfiI GAWTC 4 cut(s) 1025, 1247, 1352, 1430
Tru1I TTAA 7 cut(s) 77, 95, 339, 939, 993, 1032, 1505
Tru9I TTAA 7 cut(s) 77, 95, 339, 939, 993, 1032, 1505
TscAI CASTG 3 cut(s) 433, 469, 600
TseFI GTSAC 7 cut(s) 332, 1036, 1156, 1186, 1258, 1300, 1378
TseI GCWGC 9 cut(s) 4, 133, 470, 589, 1018, 1240, 1292, 1295, 1342
Tsp45I GTSAC 7 cut(s) 332, 1036, 1156, 1186, 1258, 1300, 1378
TspDTI ATGAA 2 cut(s) 537, 1497
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 3 cut(s) 433, 469, 600
VneI GTGCAC 1 cut(s) 650
VspI ATTAAT 1 cut(s) 1032
XapI RAATTY 4 cut(s) 692, 711, 1072, 1459
XceI RCATGY 1 cut(s) 1405
XcmI CCANNNNNNNNNTGG 2 cut(s) 853, 973
XspI CTAG 4 cut(s) 1014, 1236, 1317, 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.