Rh2DG011800

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008822
Physical Location & Seq
Forward (+)
656779 .. 661270
4492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG011800.1

Sequence Viewer

Length: 1509 bp
ATGCAGCTTGAGGTCTGTCTTGCTTGGGGATCAAGCCCTTTCTTCAAAAGCTGTGGTTCTGTTTCAGTTATACCATTAACCAGGTCTTTTGTATTAAATGGTTCTCTTTACGTACTGTGTATAAGTGTTTTGCTGCAGGCTAAACCCAACCCAAACCTTTCTGGACTGAAGCGGAAAAAACTACCATCAGAGGGCGCTAATGAGATTTATCAATATCGTTTGAAGAAGAAGAAGATACCGAAGGAGGAATTGAAGAAGAAGAAGAAGATACCGAAGGAGGAATGGAGTTGTGCTCTGTGTCAGGTTACTGTAGCAAATGAGACAATGTTTGATGGTCACCTTAATGGCAAGAGGCACAAGGCCAGCGAAAAAAGACTTGGAGCTGAAAAACTGGGAAAGAGCTCCAGTAATGCACCACTTTCAAAGAACACTGCAAAACCTTTTGAGCCTAAAGAGTTAGAGACCGCTGGTGCTGCAAGCTCACAATTAGGGGCCAAAGAAGAAAGGGGTTTGCTTGACCATAATGAAGCTGGTGATGCTTCAGACAAGAAAATGCAGGATACAGACACTTCAGAACTTCCAGTGCAGAAAGACCAATGCGGAGAGGATTTGAAGAACAATGTTGAAGTAAAAAAGGTGCACATGATGCAGAGAAAGGAAGAACCAACAAAAACAAAAAAATTTGAGTTCCTATGTGAAATTTGTAAAGTTGGTAGCAATAATCCAAAGGTGATGGAGAAGCATAGTAGGGCGAAGAAGCATATGGATAGGCTTGAGGAACTAAAATCGAATAAAGTTCGAACCACCAACAAAGCAAATGTGAACACTCCCACCACAAAGTCCGTGGCATCATCAGGGGCTACGCAGGAGGCAGTAAAAAGGCTTCAGCAAGACACAGAGAACAGTTTTGTACCCACCAATGTGATTAAAGAAGAAAACGCGAGCATTCCAACCACAATTGCTGTGGCATCATTGGTGGTTAATGAGAAGGCAGAAAATGCTAGGCTGCAGGAATCTATTAATGTGACCAAAGAAGTAAATGTGAGCACTCCCACCACAAATTCTGCGGCATCATCAGGGGCTACACAGGAGGCAGTAAAAAGGCTTCAGCAAGATACAAAGAATAGTGTTGCACCTGCTAATGTGACCAAAGAAGCAAATGCGAGCATTCCAGTCACGATTGCTGTGGCGTCATTGAGGGCTACTGGGAAGGCAGAAACTGCTAGGCTGCAGGAATCTGCTAATGTGACCAAAGAAACAAATGTGAGCATTCCAACAGCAGCAGCCGTGACATCATGGGGGGCTAGTGAGGAGACAGAAACTGCTAGGCTGCTTGACGAATCTATAAAGAATAAGGTTCCACCCATTAATGTGACCACAGAAGCAAATGCCAACATGCAAAGCACAACCTCAATTTCCGTAGAATCATTCTGGTTTACTGAGACGGCTGAAAATTTGAGGAAATTGGAGGCTTATGAAAAGTTGATCAAAGCAAGGTTAACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

502

Amino Acids

54.93

Weight (kDa)

9.18

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 95 - 119 1.1e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1144
Acc36I ACCTGC 1 cut(s) 1144
AccII CGCG 1 cut(s) 941
AciI CCGC 4 cut(s) 172, 465, 600, 1067
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 4 cut(s) 680, 699, 1060, 1453
AcuI CTGAAG 5 cut(s) 188, 525, 555, 869, 1091
AcyI GRCGYC 1 cut(s) 1190
AfaI GTAC 2 cut(s) 114, 912
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 6 cut(s) 46, 223, 253, 423, 613, 626
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AleI CACNNNNGTG 1 cut(s) 920
AluBI AGCT 6 cut(s) 7, 51, 383, 402, 480, 530
AluI AGCT 6 cut(s) 7, 51, 383, 402, 480, 530
Alw21I GWGCWC 4 cut(s) 295, 404, 642, 1049
Alw26I GTCTC 4 cut(s) 314, 455, 1307, 1436
Alw44I GTGCAC 1 cut(s) 638
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 2 cut(s) 1220, 1322
AoxI GGCC 2 cut(s) 360, 492
ApaLI GTGCAC 1 cut(s) 638
ApeKI GCWGC 8 cut(s) 4, 133, 473, 1006, 1228, 1280, 1283, 1330
ApoI RAATTY 4 cut(s) 680, 699, 1060, 1453
AseI ATTAAT 2 cut(s) 1020, 1368
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 3 cut(s) 329, 545, 742
AsuII TTCGAA 1 cut(s) 799
BaeGI GKGCMC 1 cut(s) 642
BanII GRGCYC 1 cut(s) 404
BarI GAAGNNNNNNTAC 4 cut(s) 867, 899, 1089, 1121
Bbv12I GWGCWC 4 cut(s) 295, 404, 642, 1049
BbvI GCAGC 8 cut(s) 16, 120, 460, 993, 1215, 1292, 1295, 1317
BccI CCATC 3 cut(s) 193, 326, 727
BceAI ACGGC 2 cut(s) 1271, 1461
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 1485
BcoDI GTCTC 4 cut(s) 314, 455, 1307, 1436
BfaI CTAG 4 cut(s) 1002, 1224, 1305, 1326
BfmI CTRYAG 4 cut(s) 134, 309, 1007, 1229
BfoI RGCGCY 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 1144
BfuI GTATCC 1 cut(s) 553
BisI GCNGC 9 cut(s) 5, 134, 474, 1007, 1068, 1229, 1281, 1284, 1331
BlsI GCNGC 9 cut(s) 6, 135, 475, 1008, 1069, 1230, 1282, 1285, 1332
Bme1390I CCNGG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 2 cut(s) 493, 1359
BmrFI CCNGG 1 cut(s) 82
BmrI ACTGGG 2 cut(s) 401, 1215
BmsI GCATC 5 cut(s) 526, 636, 857, 977, 1079
BmuI ACTGGG 2 cut(s) 401, 1215
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpmI CTGGAG 1 cut(s) 388
Bpu14I TTCGAA 1 cut(s) 799
BpuEI CTTGAG 2 cut(s) 29, 794
BsaAI YACGTR 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 1190
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 843
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 5 cut(s) 396, 405, 581, 1172, 1210
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 843
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 1431
BseNI ACTGG 5 cut(s) 396, 405, 581, 1172, 1210
BseRI GAGGAG 1 cut(s) 1325
BseSI GKGCMC 1 cut(s) 642
BseXI GCAGC 8 cut(s) 16, 120, 460, 993, 1215, 1292, 1295, 1317
BsgI GTGCAG 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 941
BshFI GGCC 2 cut(s) 362, 494
BsiHKAI GWGCWC 4 cut(s) 295, 404, 642, 1049
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 4 cut(s) 314, 455, 1307, 1436
BsmBI CGTCTC 1 cut(s) 1436
BsmI GAATGC 3 cut(s) 945, 1167, 1269
BsnI GGCC 2 cut(s) 362, 494
Bso31I GGTCTC 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 799
Bsp1286I GDGCHC 4 cut(s) 295, 404, 642, 1049
Bsp143I GATC 2 cut(s) 29, 1485
BspACI CCGC 4 cut(s) 172, 465, 600, 1067
BspANI GGCC 2 cut(s) 362, 494
BspCNI CTCAG 1 cut(s) 1432
BspFNI CGCG 1 cut(s) 941
BspLI GGNNCC 2 cut(s) 493, 1359
BspMAI CTGCAG 3 cut(s) 138, 1011, 1233
BspMI ACCTGC 1 cut(s) 1144
BspPI GGATC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 799
BspTNI GGTCTC 1 cut(s) 455
BsrI ACTGG 5 cut(s) 396, 405, 581, 1172, 1210
BssECI CCNNGG 1 cut(s) 843
BssMI GATC 2 cut(s) 29, 1485
BssNI GRCGYC 1 cut(s) 1190
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 3 cut(s) 117, 310, 905
BstACI GRCGYC 1 cut(s) 1190
BstAPI GCANNNNNTGC 3 cut(s) 646, 998, 1220
BstBAI YACGTR 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 799
BstC8I GCNNGC 5 cut(s) 138, 364, 478, 943, 1165
BstDEI CTNAG 1 cut(s) 1440
BstDSI CCRYGG 1 cut(s) 843
BstEII GGTNACC 1 cut(s) 335
BstFNI CGCG 1 cut(s) 941
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 32, 1488
BstMAI GTCTC 4 cut(s) 314, 455, 1307, 1436
BstMBI GATC 2 cut(s) 29, 1485
BstMWI GCNNNNNNNGC 5 cut(s) 473, 536, 646, 998, 1220
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 1399
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 4 cut(s) 134, 309, 1007, 1229
BstSLI GKGCMC 1 cut(s) 642
BstSNI TACGTA 1 cut(s) 112
BstUI CGCG 1 cut(s) 941
BstV1I GCAGC 8 cut(s) 16, 120, 460, 993, 1215, 1292, 1295, 1317
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 2 cut(s) 362, 494
BtgI CCRYGG 1 cut(s) 843
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 429, 588
BveI ACCTGC 1 cut(s) 1144
Cac8I GCNNGC 5 cut(s) 138, 364, 478, 943, 1165
CaiI CAGNNNCTG 2 cut(s) 1220, 1322
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 492
CseI GACGC 1 cut(s) 1179
CsiI ACCWGGT 1 cut(s) 80
Csp6I GTAC 2 cut(s) 113, 911
CspCI CAANNNNNGTGG 6 cut(s) 34, 69, 825, 860, 945, 980
CviAII CATG 3 cut(s) 643, 1296, 1396
CviQI GTAC 2 cut(s) 113, 911
DdeI CTNAG 1 cut(s) 1440
DpnI GATC 2 cut(s) 31, 1487
DpnII GATC 2 cut(s) 29, 1485
Ecl136II GAGCTC 1 cut(s) 402
Eco105I TACGTA 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 455
Eco53kI GAGCTC 1 cut(s) 402
Eco57I CTGAAG 5 cut(s) 188, 525, 555, 869, 1091
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 402
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 404
Esp3I CGTCTC 1 cut(s) 1436
FaeI CATG 3 cut(s) 646, 1299, 1399
FatI CATG 3 cut(s) 642, 1295, 1395
FauNDI CATATG 1 cut(s) 762
FbaI TGATCA 1 cut(s) 1485
Fnu4HI GCNGC 9 cut(s) 5, 134, 474, 1007, 1068, 1229, 1281, 1284, 1331
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 9 cut(s) 5, 134, 474, 1007, 1068, 1229, 1281, 1284, 1331
FspBI CTAG 4 cut(s) 1002, 1224, 1305, 1326
GlaI GCGC 1 cut(s) 196
GluI GCNGC 9 cut(s) 5, 134, 474, 1007, 1068, 1229, 1281, 1284, 1331
GsuI CTGGAG 1 cut(s) 388
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 2 cut(s) 362, 494
HgaI GACGC 1 cut(s) 1179
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 1190
Hin1II CATG 3 cut(s) 646, 1299, 1399
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 1500
HindII GTYRAC 1 cut(s) 1500
HinfI GANTC 4 cut(s) 1013, 1235, 1340, 1424
HpaI GTTAAC 1 cut(s) 1500
HphI GGTGA 3 cut(s) 329, 545, 742
Hpy166II GTNNAC 4 cut(s) 640, 823, 1437, 1500
Hpy188I TCNGA 3 cut(s) 190, 544, 574
Hpy188III TCNNGA 2 cut(s) 162, 1177
Hpy8I GTNNAC 4 cut(s) 640, 823, 1437, 1500
HpyAV CCTTC 4 cut(s) 235, 268, 982, 1204
HpyCH4III ACNGT 3 cut(s) 117, 310, 905
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 5 cut(s) 473, 536, 646, 998, 1220
HpyF3I CTNAG 1 cut(s) 1440
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 1190
Hsp92II CATG 3 cut(s) 646, 1299, 1399
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 1485
KspAI GTTAAC 1 cut(s) 1500
Kzo9I GATC 2 cut(s) 29, 1485
LmnI GCTCC 2 cut(s) 380, 407
Lsp1109I GCAGC 8 cut(s) 16, 120, 460, 993, 1215, 1292, 1295, 1317
LweI GCATC 5 cut(s) 526, 636, 857, 977, 1079
MabI ACCWGGT 1 cut(s) 80
MaeI CTAG 4 cut(s) 1002, 1224, 1305, 1326
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 8 cut(s) 304, 335, 1024, 1144, 1174, 1246, 1288, 1372
MalI GATC 2 cut(s) 31, 1487
MboI GATC 2 cut(s) 29, 1485
MfeI CAATTG 1 cut(s) 957
MhlI GDGCHC 4 cut(s) 295, 404, 642, 1049
MluCI AATT 9 cut(s) 248, 485, 680, 699, 957, 1060, 1413, 1453, 1463
MmeI TCCRAC 2 cut(s) 974, 1298
MseI TTAA 8 cut(s) 77, 95, 342, 927, 981, 1020, 1368, 1499
MslI CAYNNNNRTG 3 cut(s) 342, 920, 1370
MspA1I CMGCKG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 82
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 3 cut(s) 945, 1167, 1269
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 941
MwoI GCNNNNNNNGC 5 cut(s) 473, 536, 646, 998, 1220
NdeI CATATG 1 cut(s) 762
NdeII GATC 2 cut(s) 29, 1485
NlaIII CATG 3 cut(s) 646, 1299, 1399
NlaIV GGNNCC 2 cut(s) 493, 1359
NmuCI GTSAC 7 cut(s) 335, 1024, 1144, 1174, 1246, 1288, 1372
NspI RCATGY 1 cut(s) 1399
NspV TTCGAA 1 cut(s) 799
OliI CACNNNNGTG 1 cut(s) 920
PaqCI CACCTGC 1 cut(s) 1144
PctI GAATGC 3 cut(s) 945, 1167, 1269
PfeI GAWTC 4 cut(s) 1013, 1235, 1340, 1424
PkrI GCNGC 9 cut(s) 6, 135, 475, 1008, 1069, 1230, 1282, 1285, 1332
Ppu21I YACGTR 1 cut(s) 112
PshBI ATTAAT 2 cut(s) 1020, 1368
Psp124BI GAGCTC 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 493, 1359
PspPI GGNCC 1 cut(s) 492
PstI CTGCAG 3 cut(s) 138, 1011, 1233
PstNI CAGNNNCTG 2 cut(s) 1220, 1322
RsaI GTAC 2 cut(s) 114, 912
RsaNI GTAC 2 cut(s) 113, 911
RseI CAYNNNNRTG 3 cut(s) 342, 920, 1370
SacI GAGCTC 1 cut(s) 404
SaqAI TTAA 8 cut(s) 77, 95, 342, 927, 981, 1020, 1368, 1499
SatI GCNGC 9 cut(s) 5, 134, 474, 1007, 1068, 1229, 1281, 1284, 1331
Sau3AI GATC 2 cut(s) 29, 1485
Sau96I GGNCC 1 cut(s) 492
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 4 cut(s) 295, 404, 642, 1049
SexAI ACCWGGT 1 cut(s) 80
SfaNI GCATC 5 cut(s) 526, 636, 857, 977, 1079
SfcI CTRYAG 4 cut(s) 134, 309, 1007, 1229
SfuI TTCGAA 1 cut(s) 799
SmiMI CAYNNNNRTG 3 cut(s) 342, 920, 1370
SmlI CTYRAG 2 cut(s) 8, 773
SmoI CTYRAG 2 cut(s) 8, 773
SnaBI TACGTA 1 cut(s) 112
Sse9I AATT 9 cut(s) 248, 485, 680, 699, 957, 1060, 1413, 1453, 1463
SsiI CCGC 4 cut(s) 172, 465, 600, 1067
SspMI CTAG 4 cut(s) 1002, 1224, 1305, 1326
SstI GAGCTC 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 3 cut(s) 117, 310, 905
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 788, 799
TasI AATT 9 cut(s) 248, 485, 680, 699, 957, 1060, 1413, 1453, 1463
TauI GCSGC 1 cut(s) 1070
TfiI GAWTC 4 cut(s) 1013, 1235, 1340, 1424
Tru1I TTAA 8 cut(s) 77, 95, 342, 927, 981, 1020, 1368, 1499
Tru9I TTAA 8 cut(s) 77, 95, 342, 927, 981, 1020, 1368, 1499
TscAI CASTG 2 cut(s) 436, 588
TseFI GTSAC 7 cut(s) 335, 1024, 1144, 1174, 1246, 1288, 1372
TseI GCWGC 8 cut(s) 4, 133, 473, 1006, 1228, 1280, 1283, 1330
Tsp45I GTSAC 7 cut(s) 335, 1024, 1144, 1174, 1246, 1288, 1372
TspDTI ATGAA 2 cut(s) 540, 1491
TspGWI ACGGA 2 cut(s) 832, 1408
TspRI CASTG 2 cut(s) 436, 588
VneI GTGCAC 1 cut(s) 638
VspI ATTAAT 2 cut(s) 1020, 1368
XapI RAATTY 4 cut(s) 680, 699, 1060, 1453
XceI RCATGY 1 cut(s) 1399
XcmI CCANNNNNNNNNTGG 3 cut(s) 527, 841, 961
XspI CTAG 4 cut(s) 1002, 1224, 1305, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.