pycom15g13530

U1-like zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
9205024 .. 9207850
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13530.1

Sequence Viewer

Length: 1422 bp
ATGGAGTTCAAATTCCGATCGGTCGACGAGAGGCCGCCGCCGCCTTCTCCCGCCGGCTGCTACTTCTCCTCCGACCAACCCACATTTGGAGGCCAGACAGCTATGTTCCGGAATCCGGATATGAGATTGAACCTGGACCCGCTCCACAACCCGAGGTCCGTGCACGACGAGATGATCGAGCGCCAGCTGGAGAAGGAGAGGATCAGGGAGGAGATTATTGCGGCGGAGATTGTGCGAAGGCAGGCTCTCGAAGCGGAGGTGAGGAGAGAGCTCATGCTGGAGCGGGAAATCGCTATGCGAAGACCCTCTGTCGAAGGTCTCGGTTTTGATCAGGTCCGGTTCGGGGCGGTGCGATTCGACCAGAGAGTCCACCACCCCTTCGATGATGACCAGTTCGGATTGTTTGCTTCTCTTGCGCCCGCCGCATTTGATAGGGGCAAGTGGCGGCGGCAACCGGAACCTCTGACCAATGGCTTCAAGGCGATTCCGGCTCCTCCTCCTGTTTCAGACCTCAACAATAAGGACAAGTTGATCTTACTGGCGAAACCTGACCCAAATCTCTCCGGATTCAGGCGGAAAACACCACCAACAGTGGGTGCTAGTGAGCTGCCTCCATTTGGGTTGAAAAAGAAACCCAAAGAGGAATGGAGTTGCGCCCTGTGCCATGTTAGTGCAACAAGTGAGAAGGGCTTGATTCATCACATTAATGGTAAGAAGCACCAAGCCAAGGAGGCAAGACTGAGAGCTCAGAAACCAGGCACGAGCTCCAGCAATTCAAAATTGTCAAAGAAAGCTGCAAAGTTTTCTGAGCCCAAGGAGGTTAATGGTATCAAAAGCACAAAATTAAGGGCCAAACAAGTATGGAAATCGTTTGAAACCAGGGATGTTTCCAACCAGAAAATGCACAAACAGGGCACTTCAAAAGGGGAGACGCCAATGTCGAAAGTCCAGTGTGGAGAGGTTCTGAAGAATAACGACAAGGTTAAAATAGTGGACGGAGTGGAGAGAAAAGAAGACGTAAAGAAACAGAAGTTTAAGTATTGGTGTGAAGGGTGTAAAATTGGTGCCTTTACTCCAAATGTGTGGTCGTCTCATATAAGGGGAAAGAAGCACGTTGCTAGGAGTCAGGAGCTTACACAAAATAATGCGCCGATTGCAAGTTTCATGGCATCAACTGAGGCCTGTAAGGAGGAAGAAGATTCTGATGCGGCCAAAGAAGCGCATGAGAAGATTCCAATAGCAACCCCCATAGCATCAGAAGAGGCTAGTAAGGAGGCAGAAGATGCTGATGCGGACAAAGAAGCGCACGAGAAGTTCAAAGCCCTCATGATGAAGCTAATGAGAATGCATAATGTTGCTCCGGCGAAACAAGCAAATGACAGTGCAGAAGTTGTTGCGGACTGCATACCCGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

53.17

Weight (kDa)

9.02

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 365, 937
AccB1I GGYRCC 1 cut(s) 1064
AccBSI CCGCTC 2 cut(s) 142, 283
AccI GTMKAC 1 cut(s) 24
AccIII TCCGGA 3 cut(s) 108, 115, 563
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 1209
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 986
AcyI GRCGYC 1 cut(s) 932
AfiI CCNNNNNNNGG 7 cut(s) 86, 115, 343, 570, 593, 617, 727
AgsI TTSAA 8 cut(s) 10, 130, 478, 625, 777, 875, 921, 1318
AhdI GACNNNNNGTC 1 cut(s) 308
AjnI CCWGG 3 cut(s) 132, 754, 878
AluBI AGCT 9 cut(s) 101, 187, 271, 607, 746, 765, 794, 1132, 1336
AluI AGCT 9 cut(s) 101, 187, 271, 607, 746, 765, 794, 1132, 1336
Alw21I GWGCWC 4 cut(s) 165, 273, 748, 767
Alw26I GTCTC 3 cut(s) 323, 923, 1095
Alw44I GTGCAC 1 cut(s) 161
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 151
Aor13HI TCCGGA 3 cut(s) 108, 115, 563
AoxI GGCC 5 cut(s) 32, 91, 849, 1179, 1209
ApaLI GTGCAC 1 cut(s) 161
ApeKI GCWGC 3 cut(s) 57, 607, 794
ApoI RAATTY 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
AseI ATTAAT 1 cut(s) 705
AspLEI GCGC 6 cut(s) 183, 418, 656, 1150, 1222, 1306
AspS9I GGNCC 4 cut(s) 136, 156, 334, 849
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 3 cut(s) 136, 156, 334
BaeGI GKGCMC 2 cut(s) 165, 917
BanI GGYRCC 1 cut(s) 1064
BanII GRGCYC 4 cut(s) 273, 748, 767, 813
BauI CACGAG 2 cut(s) 760, 1307
BbsI GAAGAC 2 cut(s) 307, 1020
Bbv12I GWGCWC 4 cut(s) 165, 273, 748, 767
BbvI GCAGC 3 cut(s) 44, 594, 781
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 3 cut(s) 134, 756, 880
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 323, 923, 1095
BfaI CTAG 3 cut(s) 600, 1119, 1266
BfoI RGCGCY 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 731
Bme1390I CCNGG 3 cut(s) 134, 756, 880
Bme18I GGWCC 3 cut(s) 136, 156, 334
BmeRI GACNNNNNGTC 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 136, 156, 334, 849
BmiI GGNNCC 4 cut(s) 138, 459, 492, 1066
BmrFI CCNGG 3 cut(s) 134, 756, 880
BmsI GCATC 5 cut(s) 1178, 1195, 1262, 1273, 1279
BpiI GAAGAC 2 cut(s) 307, 1020
BpmI CTGGAG 3 cut(s) 209, 299, 751
BsaHI GRCGYC 1 cut(s) 932
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 152, 726, 813, 879
BsaWI WCCGGW 5 cut(s) 108, 115, 336, 454, 563
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 7 cut(s) 86, 115, 343, 570, 593, 617, 727
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 391, 543, 949
BseAI TCCGGA 3 cut(s) 108, 115, 563
BseBI CCWGG 3 cut(s) 134, 756, 880
BseDI CCNNGG 4 cut(s) 152, 726, 813, 879
BseGI GGATG 1 cut(s) 889
BseLI CCNNNNNNNGG 7 cut(s) 86, 115, 343, 570, 593, 617, 727
BseMII CTCAG 4 cut(s) 731, 761, 798, 1167
BseNI ACTGG 3 cut(s) 391, 543, 949
BseRI GAGGAG 5 cut(s) 58, 224, 277, 483, 486
BseSI GKGCMC 2 cut(s) 165, 917
BseXI GCAGC 3 cut(s) 44, 594, 781
BsgI GTGCAG 1 cut(s) 1404
Bsh1285I CGRYCG 2 cut(s) 20, 24
BshFI GGCC 5 cut(s) 34, 93, 851, 1181, 1211
BshNI GGYRCC 1 cut(s) 1064
BsiEI CGRYCG 2 cut(s) 20, 24
BsiHKAI GWGCWC 4 cut(s) 165, 273, 748, 767
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 8 cut(s) 54, 109, 116, 337, 455, 488, 564, 1361
BslI CCNNNNNNNGG 7 cut(s) 86, 115, 343, 570, 593, 617, 727
BsmAI GTCTC 3 cut(s) 323, 923, 1095
BsmBI CGTCTC 2 cut(s) 923, 1095
BsmI GAATGC 1 cut(s) 1350
BsnI GGCC 5 cut(s) 34, 93, 851, 1181, 1211
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 6 cut(s) 165, 273, 748, 767, 813, 917
Bsp13I TCCGGA 3 cut(s) 108, 115, 563
Bsp143I GATC 5 cut(s) 17, 174, 201, 328, 531
BspANI GGCC 5 cut(s) 34, 93, 851, 1181, 1211
BspCNI CTCAG 4 cut(s) 732, 760, 799, 1168
BspEI TCCGGA 3 cut(s) 108, 115, 563
BspHI TCATGA 1 cut(s) 1326
BspLI GGNNCC 4 cut(s) 138, 459, 492, 1066
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 1064
BspTNI GGTCTC 1 cut(s) 323
BsrBI CCGCTC 2 cut(s) 142, 283
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 3 cut(s) 391, 543, 949
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 4 cut(s) 152, 726, 813, 879
BssMI GATC 5 cut(s) 17, 174, 201, 328, 531
BssNI GRCGYC 1 cut(s) 932
BssSI CACGAG 2 cut(s) 760, 1307
BssT1I CCWWGG 2 cut(s) 726, 813
Bst2BI CACGAG 2 cut(s) 760, 1307
Bst2UI CCWGG 3 cut(s) 134, 756, 880
Bst4CI ACNGT 2 cut(s) 592, 1382
Bst6I CTCTTC 1 cut(s) 1254
BstACI GRCGYC 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstC8I GCNNGC 4 cut(s) 55, 185, 243, 420
BstDEI CTNAG 4 cut(s) 740, 747, 807, 1176
BstF5I GGATG 1 cut(s) 889
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 6 cut(s) 183, 418, 656, 1150, 1222, 1306
BstKTI GATC 5 cut(s) 20, 177, 204, 331, 534
BstMAI GTCTC 3 cut(s) 323, 923, 1095
BstMBI GATC 5 cut(s) 17, 174, 201, 328, 531
BstMCI CGRYCG 2 cut(s) 20, 24
BstNI CCWGG 3 cut(s) 134, 756, 880
BstSCI CCNGG 3 cut(s) 132, 754, 878
BstSLI GKGCMC 2 cut(s) 165, 917
BstV1I GCAGC 3 cut(s) 44, 594, 781
BstV2I GAAGAC 2 cut(s) 307, 1020
BstXI CCANNNNNNTGG 1 cut(s) 1083
BsuRI GGCC 5 cut(s) 34, 93, 851, 1181, 1211
BtsCI GGATG 1 cut(s) 889
BtsIMutI CAGTG 3 cut(s) 597, 956, 1387
Cac8I GCNNGC 4 cut(s) 55, 185, 243, 420
CciI TCATGA 1 cut(s) 1326
CfoI GCGC 6 cut(s) 183, 418, 656, 1150, 1222, 1306
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 136, 156, 334, 849
CseI GACGC 1 cut(s) 940
CviAII CATG 5 cut(s) 274, 665, 1165, 1223, 1327
DdeI CTNAG 4 cut(s) 740, 747, 807, 1176
DpnI GATC 5 cut(s) 19, 176, 203, 330, 533
DpnII GATC 5 cut(s) 17, 174, 201, 328, 531
DrdI GACNNNNNNGTC 2 cut(s) 365, 937
DriI GACNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 2 cut(s) 365, 937
EaeI YGGCCR 1 cut(s) 1209
Eam1104I CTCTTC 1 cut(s) 1254
Eam1105I GACNNNNNGTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 1254
EciI GGCGGA 2 cut(s) 239, 589
Ecl136II GAGCTC 3 cut(s) 271, 746, 765
Eco130I CCWWGG 2 cut(s) 726, 813
Eco147I AGGCCT 1 cut(s) 1181
Eco24I GRGCYC 4 cut(s) 273, 748, 767, 813
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 3 cut(s) 136, 156, 334
Eco53kI GAGCTC 3 cut(s) 271, 746, 765
Eco57I CTGAAG 1 cut(s) 986
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 3 cut(s) 271, 746, 765
EcoRII CCWGG 3 cut(s) 132, 754, 878
EcoT14I CCWWGG 2 cut(s) 726, 813
EcoT22I ATGCAT 1 cut(s) 1350
EcoT38I GRGCYC 4 cut(s) 273, 748, 767, 813
ErhI CCWWGG 2 cut(s) 726, 813
Esp3I CGTCTC 2 cut(s) 923, 1095
FaeI CATG 5 cut(s) 277, 668, 1168, 1226, 1330
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FatI CATG 5 cut(s) 273, 664, 1164, 1222, 1326
FauI CCCGC 4 cut(s) 58, 147, 276, 427
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 24
FokI GGATG 1 cut(s) 896
FriOI GRGCYC 4 cut(s) 273, 748, 767, 813
FspBI CTAG 3 cut(s) 600, 1119, 1266
GlaI GCGC 6 cut(s) 182, 417, 655, 1149, 1221, 1305
GsuI CTGGAG 3 cut(s) 209, 299, 751
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 5 cut(s) 34, 93, 851, 1181, 1211
HapII CCGG 8 cut(s) 54, 109, 116, 337, 455, 488, 564, 1361
HgaI GACGC 1 cut(s) 940
HhaI GCGC 6 cut(s) 183, 418, 656, 1150, 1222, 1306
Hin1I GRCGYC 1 cut(s) 932
Hin1II CATG 5 cut(s) 277, 668, 1168, 1226, 1330
Hin6I GCGC 6 cut(s) 181, 416, 654, 1148, 1220, 1304
HinP1I GCGC 6 cut(s) 181, 416, 654, 1148, 1220, 1304
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 9 cut(s) 112, 354, 366, 484, 567, 694, 1123, 1199, 1231
HpaII CCGG 8 cut(s) 54, 109, 116, 337, 455, 488, 564, 1361
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 4 cut(s) 25, 163, 370, 994
Hpy188III TCNNGA 6 cut(s) 109, 116, 248, 564, 1127, 1327
Hpy8I GTNNAC 4 cut(s) 25, 163, 370, 994
Hpy99I CGWCG 2 cut(s) 29, 170
HpyAV CCTTC 7 cut(s) 54, 187, 231, 308, 388, 679, 1043
HpyCH4III ACNGT 2 cut(s) 592, 1382
HpyCH4IV ACGT 2 cut(s) 1017, 1113
HpyCH4V TGCA 8 cut(s) 163, 674, 797, 904, 1157, 1348, 1385, 1404
HpyF3I CTNAG 4 cut(s) 740, 747, 807, 1176
HpySE526I ACGT 2 cut(s) 1017, 1113
Hsp92I GRCGYC 1 cut(s) 932
Hsp92II CATG 5 cut(s) 277, 668, 1168, 1226, 1330
HspAI GCGC 6 cut(s) 181, 416, 654, 1148, 1220, 1304
Kpn2I TCCGGA 3 cut(s) 108, 115, 563
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 5 cut(s) 17, 174, 201, 328, 531
LmnI GCTCC 6 cut(s) 147, 280, 496, 770, 1129, 1363
Lsp1109I GCAGC 3 cut(s) 44, 594, 781
LweI GCATC 5 cut(s) 1178, 1195, 1262, 1273, 1279
MaeI CTAG 3 cut(s) 600, 1119, 1266
MaeII ACGT 2 cut(s) 1017, 1113
MalI GATC 5 cut(s) 19, 176, 203, 330, 533
MbiI CCGCTC 2 cut(s) 142, 283
MboI GATC 5 cut(s) 17, 174, 201, 328, 531
MboII GAAGA 8 cut(s) 312, 979, 1025, 1205, 1208, 1240, 1271, 1292
MhlI GDGCHC 6 cut(s) 165, 273, 748, 767, 813, 917
MluCI AATT 5 cut(s) 11, 772, 779, 842, 1059
MlyI GAGTC 2 cut(s) 375, 1132
MmeI TCCRAC 2 cut(s) 96, 915
Mph1103I ATGCAT 1 cut(s) 1350
MroI TCCGGA 3 cut(s) 108, 115, 563
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 5 cut(s) 705, 822, 845, 984, 1035
MslI CAYNNNNRTG 2 cut(s) 669, 705
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 8 cut(s) 54, 109, 116, 337, 455, 488, 564, 1361
MspR9I CCNGG 3 cut(s) 134, 756, 880
Mva1269I GAATGC 1 cut(s) 1350
MvaI CCWGG 3 cut(s) 134, 756, 880
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 5 cut(s) 17, 174, 201, 328, 531
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 5 cut(s) 277, 668, 1168, 1226, 1330
NlaIV GGNNCC 4 cut(s) 138, 459, 492, 1066
NsiI ATGCAT 1 cut(s) 1350
PagI TCATGA 1 cut(s) 1326
PceI AGGCCT 1 cut(s) 1181
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 938
PctI GAATGC 1 cut(s) 1350
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 7 cut(s) 112, 354, 484, 567, 694, 1199, 1231
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 2 cut(s) 374, 1131
PpsI GAGTC 2 cut(s) 374, 1131
PshBI ATTAAT 1 cut(s) 705
Psp124BI GAGCTC 3 cut(s) 273, 748, 767
Psp6I CCWGG 3 cut(s) 132, 754, 878
PspGI CCWGG 3 cut(s) 132, 754, 878
PspN4I GGNNCC 4 cut(s) 138, 459, 492, 1066
PspPI GGNCC 4 cut(s) 136, 156, 334, 849
PvuI CGATCG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 187
RseI CAYNNNNRTG 2 cut(s) 669, 705
SacI GAGCTC 3 cut(s) 273, 748, 767
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 5 cut(s) 705, 822, 845, 984, 1035
Sau3AI GATC 5 cut(s) 17, 174, 201, 328, 531
Sau96I GGNCC 4 cut(s) 136, 156, 334, 849
SchI GAGTC 2 cut(s) 375, 1132
ScrFI CCNGG 3 cut(s) 134, 756, 880
SduI GDGCHC 6 cut(s) 165, 273, 748, 767, 813, 917
SfaNI GCATC 5 cut(s) 1178, 1195, 1262, 1273, 1279
SinI GGWCC 3 cut(s) 136, 156, 334
SmiMI CAYNNNNRTG 2 cut(s) 669, 705
Sse9I AATT 5 cut(s) 11, 772, 779, 842, 1059
SseBI AGGCCT 1 cut(s) 1181
SspMI CTAG 3 cut(s) 600, 1119, 1266
SstI GAGCTC 3 cut(s) 273, 748, 767
StuI AGGCCT 1 cut(s) 1181
StyD4I CCNGG 3 cut(s) 132, 754, 878
StyI CCWWGG 2 cut(s) 726, 813
TaaI ACNGT 2 cut(s) 592, 1382
TaiI ACGT 2 cut(s) 1020, 1116
TaqI TCGA 7 cut(s) 24, 177, 249, 312, 357, 381, 941
TaqII GACCGA 1 cut(s) 10
TasI AATT 5 cut(s) 11, 772, 779, 842, 1059
TauI GCSGC 8 cut(s) 37, 40, 43, 224, 425, 448, 451, 1211
TfiI GAWTC 7 cut(s) 112, 354, 484, 567, 694, 1199, 1231
Tru1I TTAA 5 cut(s) 705, 822, 845, 984, 1035
Tru9I TTAA 5 cut(s) 705, 822, 845, 984, 1035
TscAI CASTG 3 cut(s) 597, 956, 1387
TseI GCWGC 3 cut(s) 57, 607, 794
TspDTI ATGAA 3 cut(s) 686, 1153, 1346
TspGWI ACGGA 2 cut(s) 148, 1011
TspRI CASTG 3 cut(s) 597, 956, 1387
VneI GTGCAC 1 cut(s) 161
VpaK11BI GGWCC 3 cut(s) 136, 156, 334
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 3 cut(s) 600, 1119, 1266
Zsp2I ATGCAT 1 cut(s) 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.