Rroxscaffold_2G00155320

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008822
Physical Location & Seq
Reverse (-)
91701788 .. 91704568
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155320.1

Sequence Viewer

Length: 1074 bp
ATGGAATTCAAATTCCGAGCCGTAGACGTATCCGACCGCCCTTCTCCTCCTTCTTCCTCCACCGTCCGATACTTCTCCTCCGAGCGAACAATCCGAGGTCAATCGGTTCTTCCAACTTGGGCCGTCACGCCGTGTTCGGCTCCAAGAACGAGTCCTGACCCGACTGGTTTTCCGAATCCGGACTATCTCACGATCCACGACCCGATCCTGCACCCGACCAACGCCCGCGACGCCATGCAGCGCCAGATGGAGAAGGACCGGATCAGGGAGGAGATTCTCGCGGCGGAGATGGTGCGGCGGCGAGTTCTTGAAGCCGAGGTGAGGAGAGAGCTCATGTTGGAGCGAGAGATCGCTATGAAGAAAGCCGTCGGCGATGGGCTCGGGTTCCAGGACGACCCGTTCGGCCCAATGCAGCAGGCCCACTCTTTCGACCATCGCTTCGGGTTTAGCCCGAGGAGTAGTTCGCCGTTGGCTATGGTGCCTCGGCTGCCAGAACCTGTGCCCGATAATAATTTGGAGGTCAACAAGGAGTTGACCCCGCCGGCTCGTCCTCCGGAGCTCAACAAGGACAAGTTGATCGTACTGGCTAAACCCAACCCAAACCTTTCTGGACTGAAGCGGAAAAAACTACCATCAGAGGGCGCTAATGAGATTTATCAATATCGTTTGAAGAAGAAGAAGATACCGAAGGAGGAATTGAAGAAGAAGAAGAAGATACCGAAGGAGGAATGGAGTTGTGCTCTGTGTCAGGTTACTGTAGTAAATGAGAAAATGTTTGATGGTCACCTTAATGGCAAGAGGCACAAGGCCAGCGAAAAAAGACTTGGAGCTGAAAAACTGGGAAAGAGCTCCAGTAATGCACCACTTTCAAAGAACACTGCAAAACCTTTTGAGCCTAAAGAGTTAGAGACCACTGGTGCTGCAAGCTCACAATTAAGGGCCAAAGAAGAAAGGGGTTTGCTTGACCATAAGGAAGCCGGTGATGGTTCAGACAAGAAAATGCAGGATACAGACACTTCAGAAGAGAAAAAGTGGAACTGCCAGTGCAGAAAGACCAATGCGGAGAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

357

Amino Acids

40.38

Weight (kDa)

9.45

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 244 - 268 5e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 228, 281
AccIII TCCGGA 2 cut(s) 178, 553
AciI CCGC 9 cut(s) 37, 226, 281, 284, 295, 298, 539, 619, 1061
AclWI GGATC 3 cut(s) 187, 199, 269
AcsI RAATTY 2 cut(s) 5, 11
AcuI CTGAAG 2 cut(s) 635, 1002
AcyI GRCGYC 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 1 cut(s) 582
AfiI CCNNNNNNNGG 3 cut(s) 265, 321, 638
AgsI TTSAA 5 cut(s) 10, 311, 670, 700, 870
AjnI CCWGG 1 cut(s) 387
AjuI GAANNNNNNNTTGG 2 cut(s) 807, 839
AloI GAACNNNNNNTCC 2 cut(s) 383, 415
AluBI AGCT 5 cut(s) 331, 559, 830, 849, 927
AluI AGCT 5 cut(s) 331, 559, 830, 849, 927
Alw21I GWGCWC 4 cut(s) 333, 561, 742, 851
Alw26I GTCTC 1 cut(s) 902
AlwI GGATC 3 cut(s) 187, 199, 269
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 2 cut(s) 380, 451
Aor13HI TCCGGA 2 cut(s) 178, 553
AoxI GGCC 5 cut(s) 120, 403, 417, 807, 939
ApeKI GCWGC 4 cut(s) 238, 412, 487, 920
ApoI RAATTY 2 cut(s) 5, 11
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 422, 454
AspLEI GCGC 2 cut(s) 243, 644
AspS9I GGNCC 5 cut(s) 120, 256, 404, 418, 939
AsuHPI GGTGA 3 cut(s) 331, 776, 992
AvaI CYCGRG 2 cut(s) 380, 451
AvaII GGWCC 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 504
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 4 cut(s) 333, 381, 561, 851
Bbv12I GWGCWC 4 cut(s) 333, 561, 742, 851
BbvI GCAGC 4 cut(s) 250, 424, 474, 907
BccI CCATC 7 cut(s) 241, 283, 368, 441, 640, 773, 977
BceAI ACGGC 5 cut(s) 5, 107, 115, 350, 451
BciT130I CCWGG 1 cut(s) 389
BciVI GTATCC 2 cut(s) 40, 1000
BcoDI GTCTC 1 cut(s) 902
BfmI CTRYAG 1 cut(s) 756
BfoI RGCGCY 2 cut(s) 244, 645
BfuI GTATCC 2 cut(s) 40, 1000
BisI GCNGC 7 cut(s) 239, 282, 296, 299, 413, 488, 921
BlsI GCNGC 7 cut(s) 240, 283, 297, 300, 414, 489, 922
Bme1390I CCNGG 1 cut(s) 389
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 2 cut(s) 380, 451
BmgT120I GGNCC 5 cut(s) 120, 256, 404, 418, 939
BmiI GGNNCC 3 cut(s) 141, 386, 480
BmrFI CCNGG 1 cut(s) 389
BmrI ACTGGG 1 cut(s) 848
BmuI ACTGGG 1 cut(s) 848
BplI GAGNNNNNCTC 2 cut(s) 724, 756
BpmI CTGGAG 1 cut(s) 835
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 4 cut(s) 94, 315, 452, 482
BsaWI WCCGGW 3 cut(s) 178, 258, 553
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 321, 638
Bse118I RCCGGY 2 cut(s) 541, 977
Bse1I ACTGG 6 cut(s) 169, 588, 843, 852, 919, 1042
BseAI TCCGGA 2 cut(s) 178, 553
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 4 cut(s) 94, 315, 452, 482
BseLI CCNNNNNNNGG 3 cut(s) 265, 321, 638
BseNI ACTGG 6 cut(s) 169, 588, 843, 852, 919, 1042
BseRI GAGGAG 5 cut(s) 36, 67, 284, 337, 469
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 4 cut(s) 250, 424, 474, 907
BsgI GTGCAG 2 cut(s) 194, 1066
Bsh1236I CGCG 2 cut(s) 228, 281
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 5 cut(s) 122, 405, 419, 809, 941
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 4 cut(s) 333, 561, 742, 851
BsiHKCI CYCGRG 2 cut(s) 380, 451
BsiSI CCGG 5 cut(s) 179, 259, 542, 554, 978
BslI CCNNNNNNNGG 3 cut(s) 265, 321, 638
BsmAI GTCTC 1 cut(s) 902
BsnI GGCC 5 cut(s) 122, 405, 419, 809, 941
Bso31I GGTCTC 1 cut(s) 902
BsoBI CYCGRG 2 cut(s) 380, 451
Bsp1286I GDGCHC 6 cut(s) 333, 381, 504, 561, 742, 851
Bsp13I TCCGGA 2 cut(s) 178, 553
Bsp143I GATC 5 cut(s) 192, 204, 261, 348, 576
BspACI CCGC 9 cut(s) 37, 226, 281, 284, 295, 298, 539, 619, 1061
BspANI GGCC 5 cut(s) 122, 405, 419, 809, 941
BspEI TCCGGA 2 cut(s) 178, 553
BspFNI CGCG 2 cut(s) 228, 281
BspLI GGNNCC 3 cut(s) 141, 386, 480
BspPI GGATC 3 cut(s) 187, 199, 269
BspT107I GGYRCC 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 902
BsrFI RCCGGY 2 cut(s) 541, 977
BsrI ACTGG 6 cut(s) 169, 588, 843, 852, 919, 1042
BssAI RCCGGY 2 cut(s) 541, 977
BssECI CCNNGG 4 cut(s) 94, 315, 452, 482
BssMI GATC 5 cut(s) 192, 204, 261, 348, 576
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 64, 757
Bst6I CTCTTC 1 cut(s) 1017
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 5 cut(s) 226, 417, 543, 811, 925
BstEII GGTNACC 1 cut(s) 782
BstFNI CGCG 2 cut(s) 228, 281
BstH2I RGCGCY 2 cut(s) 244, 645
BstHHI GCGC 2 cut(s) 243, 644
BstKTI GATC 5 cut(s) 195, 207, 264, 351, 579
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 5 cut(s) 192, 204, 261, 348, 576
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 230, 487
BstNI CCWGG 1 cut(s) 389
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 2 cut(s) 228, 281
BstV1I GCAGC 4 cut(s) 250, 424, 474, 907
BsuI GTATCC 2 cut(s) 40, 1000
BsuRI GGCC 5 cut(s) 122, 405, 419, 809, 941
BtgZI GCGATG 2 cut(s) 387, 419
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 3 cut(s) 876, 912, 1049
Cac8I GCNNGC 5 cut(s) 226, 417, 543, 811, 925
CaiI CAGNNNCTG 1 cut(s) 497
CfoI GCGC 2 cut(s) 243, 644
Cfr10I RCCGGY 2 cut(s) 541, 977
Cfr13I GGNCC 5 cut(s) 120, 256, 404, 418, 939
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 581
CviAII CATG 2 cut(s) 235, 334
CviQI GTAC 1 cut(s) 581
DpnI GATC 5 cut(s) 194, 206, 263, 350, 578
DpnII GATC 5 cut(s) 192, 204, 261, 348, 576
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
EciI GGCGGA 1 cut(s) 299
Ecl136II GAGCTC 3 cut(s) 331, 559, 849
Eco24I GRGCYC 4 cut(s) 333, 381, 561, 851
Eco31I GGTCTC 1 cut(s) 902
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 3 cut(s) 331, 559, 849
Eco57I CTGAAG 2 cut(s) 635, 1002
Eco88I CYCGRG 2 cut(s) 380, 451
Eco91I GGTNACC 1 cut(s) 782
EcoICRI GAGCTC 3 cut(s) 331, 559, 849
EcoO65I GGTNACC 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 387
EcoT38I GRGCYC 4 cut(s) 333, 381, 561, 851
FaeI CATG 2 cut(s) 238, 337
FaiI YATR 5 cut(s) 236, 335, 356, 476, 969
FatI CATG 2 cut(s) 234, 333
FauI CCCGC 2 cut(s) 233, 546
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 7 cut(s) 239, 282, 296, 299, 413, 488, 921
FriOI GRGCYC 4 cut(s) 333, 381, 561, 851
Fsp4HI GCNGC 7 cut(s) 239, 282, 296, 299, 413, 488, 921
GlaI GCGC 2 cut(s) 242, 643
GluI GCNGC 7 cut(s) 239, 282, 296, 299, 413, 488, 921
GsuI CTGGAG 1 cut(s) 835
HaeII RGCGCY 2 cut(s) 244, 645
HaeIII GGCC 5 cut(s) 122, 405, 419, 809, 941
HapII CCGG 5 cut(s) 179, 259, 542, 554, 978
HgaI GACGC 1 cut(s) 239
HhaI GCGC 2 cut(s) 243, 644
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 2 cut(s) 238, 337
Hin6I GCGC 2 cut(s) 241, 642
HinP1I GCGC 2 cut(s) 241, 642
HincII GTYRAC 2 cut(s) 523, 534
HindII GTYRAC 2 cut(s) 523, 534
HinfI GANTC 3 cut(s) 151, 175, 274
HpaII CCGG 5 cut(s) 179, 259, 542, 554, 978
HphI GGTGA 3 cut(s) 331, 776, 992
Hpy166II GTNNAC 3 cut(s) 25, 523, 534
Hpy188I TCNGA 9 cut(s) 17, 34, 68, 82, 95, 174, 637, 991, 1021
Hpy188III TCNNGA 6 cut(s) 155, 179, 190, 308, 554, 609
Hpy8I GTNNAC 3 cut(s) 25, 523, 534
Hpy99I CGWCG 2 cut(s) 233, 371
HpyAV CCTTC 5 cut(s) 51, 60, 247, 682, 715
HpyCH4III ACNGT 2 cut(s) 64, 757
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 8 cut(s) 211, 238, 412, 860, 881, 923, 1003, 1047
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 487
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 2 cut(s) 238, 337
HspAI GCGC 2 cut(s) 241, 642
Kpn2I TCCGGA 2 cut(s) 178, 553
KroI GCCGGC 1 cut(s) 541
KroNI GCCGGC 1 cut(s) 543
Kzo9I GATC 5 cut(s) 192, 204, 261, 348, 576
LmnI GCTCC 5 cut(s) 145, 340, 556, 827, 854
Lsp1109I GCAGC 4 cut(s) 250, 424, 474, 907
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 124, 751, 782
MalI GATC 5 cut(s) 194, 206, 263, 350, 578
MboI GATC 5 cut(s) 192, 204, 261, 348, 576
MhlI GDGCHC 6 cut(s) 333, 381, 504, 561, 742, 851
MluCI AATT 5 cut(s) 5, 11, 511, 695, 932
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 3 cut(s) 57, 137, 318
MroI TCCGGA 2 cut(s) 178, 553
MroNI GCCGGC 1 cut(s) 541
MseI TTAA 2 cut(s) 789, 935
MslI CAYNNNNRTG 1 cut(s) 789
MspI CCGG 5 cut(s) 179, 259, 542, 554, 978
MspR9I CCNGG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 389
MvnI CGCG 2 cut(s) 228, 281
MwoI GCNNNNNNNGC 2 cut(s) 230, 487
NaeI GCCGGC 1 cut(s) 543
NdeII GATC 5 cut(s) 192, 204, 261, 348, 576
NgoMIV GCCGGC 1 cut(s) 541
NlaIII CATG 2 cut(s) 238, 337
NlaIV GGNNCC 3 cut(s) 141, 386, 480
NmeAIII GCCGAG 2 cut(s) 340, 463
NmuCI GTSAC 2 cut(s) 124, 782
PdiI GCCGGC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 175, 274
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 7 cut(s) 240, 283, 297, 300, 414, 489, 922
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp124BI GAGCTC 3 cut(s) 333, 561, 851
Psp6I CCWGG 1 cut(s) 387
PspEI GGTNACC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 3 cut(s) 141, 386, 480
PspPI GGNCC 5 cut(s) 120, 256, 404, 418, 939
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 789
SacI GAGCTC 3 cut(s) 333, 561, 851
SaqAI TTAA 2 cut(s) 789, 935
SatI GCNGC 7 cut(s) 239, 282, 296, 299, 413, 488, 921
Sau3AI GATC 5 cut(s) 192, 204, 261, 348, 576
Sau96I GGNCC 5 cut(s) 120, 256, 404, 418, 939
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 6 cut(s) 333, 381, 504, 561, 742, 851
SfcI CTRYAG 1 cut(s) 756
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 789
Sse9I AATT 5 cut(s) 5, 11, 511, 695, 932
SsiI CCGC 9 cut(s) 37, 226, 281, 284, 295, 298, 539, 619, 1061
SstI GAGCTC 3 cut(s) 333, 561, 851
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 64, 757
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 429
TasI AATT 5 cut(s) 5, 11, 511, 695, 932
TauI GCSGC 3 cut(s) 284, 298, 301
TfiI GAWTC 2 cut(s) 175, 274
Tru1I TTAA 2 cut(s) 789, 935
Tru9I TTAA 2 cut(s) 789, 935
TscAI CASTG 3 cut(s) 883, 919, 1049
TseFI GTSAC 2 cut(s) 124, 782
TseI GCWGC 4 cut(s) 238, 412, 487, 920
Tsp45I GTSAC 2 cut(s) 124, 782
TspDTI ATGAA 1 cut(s) 371
TspRI CASTG 3 cut(s) 883, 919, 1049
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 2 cut(s) 5, 11
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.