Rh2AG009500

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008822
Physical Location & Seq
Forward (+)
811294 .. 815221
3928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG009500.1

Sequence Viewer

Length: 1524 bp
ATGCAGCTTGAGGTCTGTCTTGCTTGGGGATCAAGCCCTTTCTTCAAAAGCTGTGGTTCTGTTTCAGTTATACCATTAACCAGGTCTTTTGTATTAAATGGTTCTCTTTACGTACTGTGTATAAGTGTTTTGCTGCAGGCTAAACCCAACCCAAACCTTTCTGGACTGAAGCGGAAAAAACTACCATCAGAGGGCACTAATGAGATTTATCAATATCGTTTGAAGAAGAAGAAGATACCGAAGGAGGAATTGAAGAAGAAGAAGAAGATACCGAAGGAGGAATGGAGTTGTGCTCTGTGTCAGGTTACTGTAGCAAATGAGACAATGTTTGATGGTCACCTTAATGGCAAGAGGCACAAGGCCAGCGAAAAAAGACTTGGAGCTGAAAAACTGGGAAAGAGCTCCAGTAATGCACCACTTTCAAAGAACACTGCAAAACCTTTTGAGCCTAAAGAGTTAGAGACCACTGGTGCTGCAAGCTCACAATTAGGGGCCAAAGAAGAAGGGGGTTTGCTTGACCATAATGAAGCCGGTGATGGTTCAGACAAGAAAATGCAGGATACAGACACTTCAGAAGAGAAAAAAGTGGAACTTCCAGTGCAGAAAGACGAATGCAGAGAGGATTTGAAGAACAATGTTGAAGTAAAAAAGGTGCACATGATGCAGAGAAAGGAAGAACCAACAAAAACAAAAAAATTTGAGTTCCTATGTGAAATTTGTAAAGTTGGTAGCAATAATCCAAAGGTGATGGAGAAGCATAGTAGGGCGAAGAAGCATATGGATAGGCTTGAGGAACTAAAATCGAATAAAGTTCGAACCACCAATGAAGCAAATGTGAACACTCCCACCACAAAGTCCGTGGCATCATCAGGGGCTACGCAGGAGGCAGTAAAGAGGCTTCAGCAAGACACAGAGAACAGTTTTGTACCCACCAATGCGATTAAAGAAGCAAATGCGAGCATTCCAACCACAATTGCTGCGGCATCATTGGTGGTTAATGAGAAGGCAGAAAATGCTAGGCTGCAGGAATCTATTAATGTGACCAAAGAAGCAAATGTGAGCACTCCCACCACAAATTCTGCGGCATCATCAGGGGCTACGCAGGAGGCAGTAAAAAGGCATCAGCAAGATACAAAGAATAGTGTTGCACCTGCTAATGTGACCAAAGAAGCAAATGCGAGCATTCCAGTCACGATTTCTGTGGCGTCATTGAGGGCTACTGGGAAGGCAGAAACTGCTAGGCTGCAGGAATCTGCTAATGTGACCAAAGAAACAAATGTGAGCATTCCAACAGCAGCAGCCGTGACATCATGGGGAGCTAGTGAGGAGACAGAAACTGCTAGGCTGCTTGACGAATCTATAAAGAATAAGGTTCCACCCATTAATGTGACCACAGAAGCAAATGCCAACATGCAAAGCACAACCTCAATTTCCGTAGAATCATTCTGGTTTACTGAGACGGCTGAAAATTTGAGGAAATTGGAGGCTTATGAAAAGTTGATCAAAGCAAGGTTAACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

507

Amino Acids

55.49

Weight (kDa)

9.07

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 95 - 119 1.1e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1159
Acc36I ACCTGC 1 cut(s) 1159
AciI CCGC 3 cut(s) 172, 980, 1082
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 4 cut(s) 695, 714, 1075, 1468
AcuI CTGAAG 3 cut(s) 188, 555, 884
AcyI GRCGYC 1 cut(s) 1205
AfaI GTAC 2 cut(s) 114, 927
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 6 cut(s) 46, 223, 253, 423, 628, 641
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AluBI AGCT 6 cut(s) 7, 51, 383, 402, 480, 1319
AluI AGCT 6 cut(s) 7, 51, 383, 402, 480, 1319
Alw21I GWGCWC 4 cut(s) 295, 404, 657, 1064
Alw26I GTCTC 4 cut(s) 314, 455, 1322, 1451
Alw44I GTGCAC 1 cut(s) 653
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 2 cut(s) 1235, 1337
AoxI GGCC 2 cut(s) 360, 492
ApaLI GTGCAC 1 cut(s) 653
ApeKI GCWGC 9 cut(s) 4, 133, 473, 977, 1021, 1243, 1295, 1298, 1345
ApoI RAATTY 4 cut(s) 695, 714, 1075, 1468
AseI ATTAAT 2 cut(s) 1035, 1383
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 3 cut(s) 329, 545, 757
AsuII TTCGAA 1 cut(s) 814
BaeGI GKGCMC 2 cut(s) 197, 657
BanII GRGCYC 1 cut(s) 404
BarI GAAGNNNNNNTAC 2 cut(s) 882, 914
Bbv12I GWGCWC 4 cut(s) 295, 404, 657, 1064
BbvI GCAGC 9 cut(s) 16, 120, 460, 964, 1008, 1230, 1307, 1310, 1332
BccI CCATC 4 cut(s) 193, 326, 530, 742
BceAI ACGGC 2 cut(s) 1286, 1476
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 1500
BcoDI GTCTC 4 cut(s) 314, 455, 1322, 1451
BfaI CTAG 4 cut(s) 1017, 1239, 1320, 1341
BfmI CTRYAG 4 cut(s) 134, 309, 1022, 1244
BfuAI ACCTGC 1 cut(s) 1159
BfuI GTATCC 1 cut(s) 553
Bme1390I CCNGG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 2 cut(s) 493, 1374
BmrFI CCNGG 1 cut(s) 82
BmrI ACTGGG 2 cut(s) 401, 1230
BmsI GCATC 5 cut(s) 651, 872, 992, 1094, 1129
BmuI ACTGGG 2 cut(s) 401, 1230
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpmI CTGGAG 1 cut(s) 388
Bpu14I TTCGAA 1 cut(s) 814
BpuEI CTTGAG 2 cut(s) 29, 809
BsaAI YACGTR 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 1205
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 858
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 6 cut(s) 396, 405, 472, 596, 1187, 1225
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 858
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 1446
BseNI ACTGG 6 cut(s) 396, 405, 472, 596, 1187, 1225
BseRI GAGGAG 1 cut(s) 1340
BseSI GKGCMC 2 cut(s) 197, 657
BseXI GCAGC 9 cut(s) 16, 120, 460, 964, 1008, 1230, 1307, 1310, 1332
BsgI GTGCAG 1 cut(s) 620
BshFI GGCC 2 cut(s) 362, 494
BsiHKAI GWGCWC 4 cut(s) 295, 404, 657, 1064
BsiSI CCGG 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 4 cut(s) 314, 455, 1322, 1451
BsmBI CGTCTC 1 cut(s) 1451
BsmI GAATGC 4 cut(s) 617, 960, 1182, 1284
BsnI GGCC 2 cut(s) 362, 494
Bso31I GGTCTC 1 cut(s) 455
Bsp119I TTCGAA 1 cut(s) 814
Bsp1286I GDGCHC 5 cut(s) 197, 295, 404, 657, 1064
Bsp143I GATC 2 cut(s) 29, 1500
BspACI CCGC 3 cut(s) 172, 980, 1082
BspANI GGCC 2 cut(s) 362, 494
BspCNI CTCAG 1 cut(s) 1447
BspLI GGNNCC 2 cut(s) 493, 1374
BspMAI CTGCAG 3 cut(s) 138, 1026, 1248
BspMI ACCTGC 1 cut(s) 1159
BspPI GGATC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 814
BspTNI GGTCTC 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 6 cut(s) 396, 405, 472, 596, 1187, 1225
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 858
BssMI GATC 2 cut(s) 29, 1500
BssNI GRCGYC 1 cut(s) 1205
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 3 cut(s) 117, 310, 920
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 1205
BstAPI GCANNNNNTGC 3 cut(s) 661, 1013, 1235
BstBAI YACGTR 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 814
BstC8I GCNNGC 5 cut(s) 138, 364, 478, 958, 1180
BstDEI CTNAG 1 cut(s) 1455
BstDSI CCRYGG 1 cut(s) 858
BstEII GGTNACC 1 cut(s) 335
BstKTI GATC 2 cut(s) 32, 1503
BstMAI GTCTC 4 cut(s) 314, 455, 1322, 1451
BstMBI GATC 2 cut(s) 29, 1500
BstMWI GCNNNNNNNGC 3 cut(s) 661, 1013, 1235
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 1414
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 4 cut(s) 134, 309, 1022, 1244
BstSLI GKGCMC 2 cut(s) 197, 657
BstSNI TACGTA 1 cut(s) 112
BstV1I GCAGC 9 cut(s) 16, 120, 460, 964, 1008, 1230, 1307, 1310, 1332
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 2 cut(s) 362, 494
BtgI CCRYGG 1 cut(s) 858
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 429, 465, 603
BveI ACCTGC 1 cut(s) 1159
Cac8I GCNNGC 5 cut(s) 138, 364, 478, 958, 1180
CaiI CAGNNNCTG 2 cut(s) 1235, 1337
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 492
CseI GACGC 1 cut(s) 1194
CsiI ACCWGGT 1 cut(s) 80
Csp6I GTAC 2 cut(s) 113, 926
CspCI CAANNNNNGTGG 4 cut(s) 34, 69, 840, 875
CviAII CATG 3 cut(s) 658, 1311, 1411
CviQI GTAC 2 cut(s) 113, 926
DdeI CTNAG 1 cut(s) 1455
DpnI GATC 2 cut(s) 31, 1502
DpnII GATC 2 cut(s) 29, 1500
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 402
Eco105I TACGTA 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 455
Eco53kI GAGCTC 1 cut(s) 402
Eco57I CTGAAG 3 cut(s) 188, 555, 884
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 402
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 404
Esp3I CGTCTC 1 cut(s) 1451
FaeI CATG 3 cut(s) 661, 1314, 1414
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 3 cut(s) 657, 1310, 1410
FauNDI CATATG 1 cut(s) 777
FbaI TGATCA 1 cut(s) 1500
FriOI GRGCYC 1 cut(s) 404
FspBI CTAG 4 cut(s) 1017, 1239, 1320, 1341
GsuI CTGGAG 1 cut(s) 388
HaeIII GGCC 2 cut(s) 362, 494
HapII CCGG 1 cut(s) 531
HgaI GACGC 1 cut(s) 1194
Hin1I GRCGYC 1 cut(s) 1205
Hin1II CATG 3 cut(s) 661, 1314, 1414
HincII GTYRAC 1 cut(s) 1515
HindII GTYRAC 1 cut(s) 1515
HinfI GANTC 4 cut(s) 1028, 1250, 1355, 1439
HpaI GTTAAC 1 cut(s) 1515
HpaII CCGG 1 cut(s) 531
HphI GGTGA 3 cut(s) 329, 545, 757
Hpy166II GTNNAC 4 cut(s) 655, 838, 1452, 1515
Hpy188I TCNGA 3 cut(s) 190, 544, 574
Hpy188III TCNNGA 2 cut(s) 162, 1192
Hpy8I GTNNAC 4 cut(s) 655, 838, 1452, 1515
HpyAV CCTTC 5 cut(s) 235, 268, 497, 997, 1219
HpyCH4III ACNGT 3 cut(s) 117, 310, 920
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 3 cut(s) 661, 1013, 1235
HpyF3I CTNAG 1 cut(s) 1455
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 1205
Hsp92II CATG 3 cut(s) 661, 1314, 1414
Ksp22I TGATCA 1 cut(s) 1500
KspAI GTTAAC 1 cut(s) 1515
Kzo9I GATC 2 cut(s) 29, 1500
LmnI GCTCC 3 cut(s) 380, 407, 1316
Lsp1109I GCAGC 9 cut(s) 16, 120, 460, 964, 1008, 1230, 1307, 1310, 1332
LweI GCATC 5 cut(s) 651, 872, 992, 1094, 1129
MabI ACCWGGT 1 cut(s) 80
MaeI CTAG 4 cut(s) 1017, 1239, 1320, 1341
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 8 cut(s) 304, 335, 1039, 1159, 1189, 1261, 1303, 1387
MalI GATC 2 cut(s) 31, 1502
MboI GATC 2 cut(s) 29, 1500
MfeI CAATTG 1 cut(s) 972
MhlI GDGCHC 5 cut(s) 197, 295, 404, 657, 1064
MluCI AATT 9 cut(s) 248, 485, 695, 714, 972, 1075, 1428, 1468, 1478
MmeI TCCRAC 2 cut(s) 989, 1313
MseI TTAA 8 cut(s) 77, 95, 342, 942, 996, 1035, 1383, 1514
MslI CAYNNNNRTG 2 cut(s) 342, 1385
MspI CCGG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 82
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 4 cut(s) 617, 960, 1182, 1284
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 661, 1013, 1235
NdeI CATATG 1 cut(s) 777
NdeII GATC 2 cut(s) 29, 1500
NlaIII CATG 3 cut(s) 661, 1314, 1414
NlaIV GGNNCC 2 cut(s) 493, 1374
NmuCI GTSAC 7 cut(s) 335, 1039, 1159, 1189, 1261, 1303, 1387
NspI RCATGY 1 cut(s) 1414
NspV TTCGAA 1 cut(s) 814
PaqCI CACCTGC 1 cut(s) 1159
PctI GAATGC 4 cut(s) 617, 960, 1182, 1284
PfeI GAWTC 4 cut(s) 1028, 1250, 1355, 1439
Ppu21I YACGTR 1 cut(s) 112
PshBI ATTAAT 2 cut(s) 1035, 1383
Psp124BI GAGCTC 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 493, 1374
PspPI GGNCC 1 cut(s) 492
PstI CTGCAG 3 cut(s) 138, 1026, 1248
PstNI CAGNNNCTG 2 cut(s) 1235, 1337
RsaI GTAC 2 cut(s) 114, 927
RsaNI GTAC 2 cut(s) 113, 926
RseI CAYNNNNRTG 2 cut(s) 342, 1385
SacI GAGCTC 1 cut(s) 404
SaqAI TTAA 8 cut(s) 77, 95, 342, 942, 996, 1035, 1383, 1514
Sau3AI GATC 2 cut(s) 29, 1500
Sau96I GGNCC 1 cut(s) 492
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 5 cut(s) 197, 295, 404, 657, 1064
SexAI ACCWGGT 1 cut(s) 80
SfaNI GCATC 5 cut(s) 651, 872, 992, 1094, 1129
SfcI CTRYAG 4 cut(s) 134, 309, 1022, 1244
SfuI TTCGAA 1 cut(s) 814
SmiMI CAYNNNNRTG 2 cut(s) 342, 1385
SmlI CTYRAG 2 cut(s) 8, 788
SmoI CTYRAG 2 cut(s) 8, 788
SnaBI TACGTA 1 cut(s) 112
Sse9I AATT 9 cut(s) 248, 485, 695, 714, 972, 1075, 1428, 1468, 1478
SsiI CCGC 3 cut(s) 172, 980, 1082
SspMI CTAG 4 cut(s) 1017, 1239, 1320, 1341
SstI GAGCTC 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 3 cut(s) 117, 310, 920
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 803, 814
TasI AATT 9 cut(s) 248, 485, 695, 714, 972, 1075, 1428, 1468, 1478
TauI GCSGC 2 cut(s) 983, 1085
TfiI GAWTC 4 cut(s) 1028, 1250, 1355, 1439
Tru1I TTAA 8 cut(s) 77, 95, 342, 942, 996, 1035, 1383, 1514
Tru9I TTAA 8 cut(s) 77, 95, 342, 942, 996, 1035, 1383, 1514
TscAI CASTG 3 cut(s) 436, 472, 603
TseFI GTSAC 7 cut(s) 335, 1039, 1159, 1189, 1261, 1303, 1387
TseI GCWGC 9 cut(s) 4, 133, 473, 977, 1021, 1243, 1295, 1298, 1345
Tsp45I GTSAC 7 cut(s) 335, 1039, 1159, 1189, 1261, 1303, 1387
TspDTI ATGAA 3 cut(s) 540, 840, 1506
TspGWI ACGGA 2 cut(s) 847, 1423
TspRI CASTG 3 cut(s) 436, 472, 603
VneI GTGCAC 1 cut(s) 653
VspI ATTAAT 2 cut(s) 1035, 1383
XapI RAATTY 4 cut(s) 695, 714, 1075, 1468
XceI RCATGY 1 cut(s) 1414
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XspI CTAG 4 cut(s) 1017, 1239, 1320, 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.