Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006901

Physical Location & Seq

Genomic Coordinates Reverse (-)

14512908 .. 14516110

Gene Structure 3203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1183500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGGTAGACTCCAAGAGGAGCCACATTCCTTCCAGAAGGGATCAACTCCGGTAGATTCAGGGATCCAATCCTGCTGCCTTGTATGTTTGGGCAAGAGTAGTTGCCAAGTTGTTCGTTCAAGAACGAAATTGATGAATGCTTTGATTGCAAAAAGGAAGCCTCATGAGGCCCATTCCGTTTTCAAGAGTTTAGTAGAAGAAGGACACAGGCCAACTCTTATAACATACACAACTCTTGTAGCTGCCTTGACGCGCCTGAGGCGTTTCAAGTCTATTCCCTGGCTCCTCTCTCAAGTGGAGGAGAATGGAATGAAGCCCGATTCAATACTTTTTAATGCCATGATCAATGCTTCCTCTGAGTCTGGAAATATCGACGATGCCATGAAAATCTTTCAGAAAATGGAGGAGAGTGGATGTAAGCCCACAACCAGCACTTTTAACACTCTTATCAAAGGGTATGGAATTGTCGGTAAGCCTGAAGAAGCCTTAAAACTGCTAGAGCTTATGTTGCAGGATGAGAATACAAAACCGAATGACAGGACGTATAATATTATTGTTAGAGCCTGGTGTAGCGAGGGGAAAATGAATCAAGCCTGGAATGTGGTGTATAAGATGGTTGCATCTGGTATTCAACCCGATGTAGTCACTTACAACACGTTGGCAAGGGCTTATGCCGAGAATGGAGAGACATATATGGCTGAAAGGCTGATGTTCGAGATGCAGAACAACAAAGTTAACCCCAACGAGCGAACTTGTGGCATCATTGTAAATGGCTACTGTAAAGAAGGTAGCATGACAGATGCCTTGAGGTTTGTATACAGAATGAAGGATCTTGGTGTGCAGCCGAATCTTGTTGTTTTTAACTCTCTTATCAAGGGATTTCTGGACATTACGGATACTGATGGAGTTGACGAGGTACTAACGTCGATGGAAGAATTTGGAATAAAACCAGATGTAATAACATTTAGCACCATAATGGATGGATGGAGCTCAGCAGGACTCATGGAAAAATGCCAGGAGGTCTTCAATGACATGATAAAATCCGACATAGAACCTGACATCCATGCATTCAGCATTCTTGCAAAAGGCTATGTGCGTGCCGGTGAGCCTGAGAAGGCCGAGTCACTTATGACATCCATGGGAAAATATGGCGTGTACCCAAATGTTGTAATCTTCACAACCATCATAAGCGGGTGGTGCACTGCTGGAAAAATGGAGCATGCTTGGAGTGTCTATGAGAAAATGTGCGAAATGGGAATCACCCCGAATTTGAAAACTTTTGAAACCCTTATATGGGGATATGGAGAGGCTAGGCAACCATGGCTAGCAGAAGATTTACTCGATATAATGGAAGAGAAGGGAGTTCATCCTACTAAGAGGACTATCCAGCTCGTGGCTGAAGCTTGGCGTGCGATAGGCTTAGTGACCGAAGCCATGAGAGTCTTAAATGATTCGGGCAAAGAAAATAGGAGGGACAAGATACCTGATCAGAGCTTGGAGATCATTAGTAGGAAACAAAACTTAAGTACTTCTTATCCTAATGTTTTGCAGATACCTGGAGTAGTAGTTTCTGATAGCGGCGGTTCTGCTGCCAACATACGAGGTCATATGCTTGTGAGAGGGTTTGAGTTTTCAGCTGAAAGTATGCAGCACAGTGCTACCAAAACCATGTGTCTTACGCATACTACATCGCCCGCGCTTAAAGTCCAGCAGCCACTGATTATATGTAGAAGGCAGTTTCAGTGTCAAGTTGGGATGTTCAGGCATTTCGTACATACATGTCCGGTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Pkinase

Protein Analysis

598

Amino Acids

66.84

Weight (kDa)

6.49

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	42 - 83	3.9e-06	PPR repeat family
PPR_3	PF13812	95 - 154	9.9e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	102 - 135	1.4e-06	PPR repeat
PPR_2	PF13041	106 - 153	1e-13	PPR repeat family
PPR	PF01535	110 - 139	1.5e-06	PPR repeat
PPR_long	PF17177	112 - 229	6e-11	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	127 - 233	9.1e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	138 - 169	6e-08	PPR repeat
PPR_2	PF13041	141 - 190	1.2e-11	PPR repeat family
PPR	PF01535	144 - 171	1.2e-06	PPR repeat
PPR_1	PF12854	176 - 206	2.1e-06	PPR repeat
PPR_2	PF13041	177 - 225	4e-13	PPR repeat family
PPR_3	PF13812	201 - 257	2.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	212 - 261	7e-12	PPR repeat family
PPR_2	PF13041	251 - 294	9.7e-09	PPR repeat family
PPR_long	PF17177	265 - 373	2.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	274 - 327	1.5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	282 - 328	1.4e-08	PPR repeat family
PPR_1	PF12854	314 - 345	2.4e-06	PPR repeat
PPR_2	PF13041	317 - 365	2e-11	PPR repeat family
PPR_long	PF17177	337 - 423	2.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	341 - 397	3.9e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	376 - 435	2.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	384 - 415	1.6e-08	PPR repeat
PPR_2	PF13041	387 - 434	2.9e-14	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006901)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540
malus_domestica	MD15G1183500.v1.1
prunus_persica	Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1
pyrus_communis	pycom15g16530
rosa_chinensis	RchiOBHm_Chr2g0090251
rosa_laevigata	RLG00000016091
rosa_multiflora	Rmu_co8459707.1_g000001 Rmu_sc0012828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151350
rosa_rugosa	Rorug02G0005700 Rorug02G0005800 Rorug02G0005900 Rorug02G0006000 Rorug02G0006000
rosa_samantha	Rh2AG051800 Rh2BG050400 Rh2CG052600 Rh2DG051700
rosa_wichuraiana	Rw2G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	1393
AccI	GTMKAC	2 cut(s)	7, 816
AccII	CGCG	2 cut(s)	253, 1697
AciI	CCGC	4 cut(s)	1191, 1578, 1581, 1695
AclWI	GGATC	4 cut(s)	49, 58, 71, 837
AcsI	RAATTY	2 cut(s)	935, 1267
AcuI	CTGAAG	2 cut(s)	498, 1419
AfaI	GTAC	4 cut(s)	918, 1157, 1528, 1773
AfiI	CCNNNNNNNGG	3 cut(s)	1293, 1294, 1393
AflII	CTTAAG	1 cut(s)	1522
AflIII	ACRYGT	2 cut(s)	654, 1778
AgsI	TTSAA	8 cut(s)	120, 184, 268, 324, 632, 1027, 1273, 1283
AjnI	CCWGG	5 cut(s)	278, 563, 593, 1014, 1555
AloI	GAACNNNNNNTCC	2 cut(s)	1044, 1076
AluBI	AGCT	7 cut(s)	242, 502, 990, 1390, 1403, 1494, 1637
AluI	AGCT	7 cut(s)	242, 502, 990, 1390, 1403, 1494, 1637
Alw21I	GWGCWC	2 cut(s)	992, 1202
Alw26I	GTCTC	1 cut(s)	680
Alw44I	GTGCAC	1 cut(s)	1198
AlwI	GGATC	4 cut(s)	49, 58, 71, 837
AlwNI	CAGNNNCTG	1 cut(s)	1717
AoxI	GGCC	3 cut(s)	168, 209, 1116
ApaLI	GTGCAC	1 cut(s)	1198
ApeKI	GCWGC	6 cut(s)	75, 242, 841, 1589, 1648, 1711
ApoI	RAATTY	2 cut(s)	935, 1267
AspLEI	GCGC	2 cut(s)	255, 1699
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	1115, 1252
AsuNHI	GCTAGC	1 cut(s)	1324
AxyI	CCTNAGG	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	1202
BaeI	ACNNNNGTAYC	2 cut(s)	908, 941
BamHI	GGATCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	992
BauI	CACGAG	1 cut(s)	1391
BbsI	GAAGAC	1 cut(s)	1015
Bbv12I	GWGCWC	2 cut(s)	992, 1202
BbvI	GCAGC	6 cut(s)	62, 229, 853, 1576, 1660, 1723
BccI	CCATC	6 cut(s)	607, 896, 922, 974, 978, 1190
BciT130I	CCWGG	5 cut(s)	280, 565, 595, 1016, 1557
BciVI	GTATCC	1 cut(s)	889
BclI	TGATCA	2 cut(s)	342, 1486
BcoDI	GTCTC	1 cut(s)	680
BfaI	CTAG	3 cut(s)	497, 1311, 1325
BfrI	CTTAAG	1 cut(s)	1522
BfuI	GTATCC	1 cut(s)	889
BisI	GCNGC	7 cut(s)	76, 243, 842, 1579, 1590, 1649, 1712
BlpI	GCTNAGC	1 cut(s)	991
BlsI	GCNGC	7 cut(s)	77, 244, 843, 1580, 1591, 1650, 1713
BmcAI	AGTACT	1 cut(s)	1528
Bme1390I	CCNGG	5 cut(s)	280, 565, 595, 1016, 1557
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	21, 65, 284
BmrFI	CCNGG	5 cut(s)	280, 565, 595, 1016, 1557
BmsI	GCATC	5 cut(s)	367, 629, 708, 768, 790
BmtI	GCTAGC	1 cut(s)	1328
BpiI	GAAGAC	1 cut(s)	1015
BpmI	CTGGAG	1 cut(s)	1578
Bpu1102I	GCTNAGC	1 cut(s)	991
BpuEI	CTTGAG	2 cut(s)	276, 826
BsaJI	CCNNGG	3 cut(s)	278, 1137, 1319
BsaWI	WCCGGW	2 cut(s)	49, 1783
BsaXI	ACNNNNNCTCC	2 cut(s)	1551, 1581
Bsc4I	CCNNNNNNNGG	3 cut(s)	1293, 1294, 1393
Bse118I	RCCGGY	1 cut(s)	1100
Bse21I	CCTNAGG	1 cut(s)	257
BseBI	CCWGG	5 cut(s)	280, 565, 595, 1016, 1557
BseDI	CCNNGG	3 cut(s)	278, 1137, 1319
BseGI	GGATG	8 cut(s)	419, 520, 985, 989, 1059, 1133, 1366, 1761
BseLI	CCNNNNNNNGG	3 cut(s)	1293, 1294, 1393
BseMII	CTCAG	4 cut(s)	248, 348, 1005, 1101
BseRI	GAGGAG	4 cut(s)	32, 275, 314, 419
BseSI	GKGCMC	1 cut(s)	1202
BseXI	GCAGC	6 cut(s)	62, 229, 853, 1576, 1660, 1723
BsgI	GTGCAG	1 cut(s)	860
Bsh1236I	CGCG	2 cut(s)	253, 1697
BshFI	GGCC	3 cut(s)	170, 211, 1118
BsiHKAI	GWGCWC	2 cut(s)	992, 1202
BsiSI	CCGG	3 cut(s)	50, 1101, 1784
BslFI	GGGAC	1 cut(s)	1487
BslI	CCNNNNNNNGG	3 cut(s)	1293, 1294, 1393
BsmAI	GTCTC	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	1487
BsmI	GAATGC	3 cut(s)	142, 1067, 1074
BsnI	GGCC	3 cut(s)	170, 211, 1118
Bsp1286I	GDGCHC	2 cut(s)	992, 1202
Bsp143I	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
Bsp1720I	GCTNAGC	1 cut(s)	991
Bsp19I	CCATGG	2 cut(s)	1137, 1319
BspACI	CCGC	4 cut(s)	1191, 1578, 1581, 1695
BspANI	GGCC	3 cut(s)	170, 211, 1118
BspCNI	CTCAG	4 cut(s)	249, 349, 1004, 1102
BspFNI	CGCG	2 cut(s)	253, 1697
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	21, 65, 284
BspOI	GCTAGC	1 cut(s)	1328
BspPI	GGATC	4 cut(s)	49, 58, 71, 837
BspTI	CTTAAG	1 cut(s)	1522
BsrFI	RCCGGY	1 cut(s)	1100
BssAI	RCCGGY	1 cut(s)	1100
BssECI	CCNNGG	3 cut(s)	278, 1137, 1319
BssMI	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
BssNAI	GTATAC	1 cut(s)	817
BssSI	CACGAG	1 cut(s)	1391
BssT1I	CCWWGG	2 cut(s)	1137, 1319
Bst1107I	GTATAC	1 cut(s)	817
Bst2BI	CACGAG	1 cut(s)	1391
Bst2UI	CCWGG	5 cut(s)	280, 565, 595, 1016, 1557
Bst4CI	ACNGT	2 cut(s)	779, 1655
Bst6I	CTCTTC	1 cut(s)	1347
BstAFI	CTTAAG	1 cut(s)	1522
BstC8I	GCNNGC	5 cut(s)	1098, 1221, 1326, 1410, 1695
BstDEI	CTNAG	6 cut(s)	257, 357, 991, 1110, 1374, 1420
BstDSI	CCRYGG	2 cut(s)	1137, 1319
BstF5I	GGATG	8 cut(s)	419, 520, 985, 989, 1059, 1133, 1366, 1761
BstFNI	CGCG	2 cut(s)	253, 1697
BstHHI	GCGC	2 cut(s)	255, 1699
BstKTI	GATC	6 cut(s)	44, 66, 345, 832, 1489, 1503
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 259, 508, 1197, 1321, 1409
BstNI	CCWGG	5 cut(s)	280, 565, 595, 1016, 1557
BstNSI	RCATGY	2 cut(s)	1223, 1782
BstSCI	CCNGG	5 cut(s)	278, 563, 593, 1014, 1555
BstSLI	GKGCMC	1 cut(s)	1202
BstUI	CGCG	2 cut(s)	253, 1697
BstV1I	GCAGC	6 cut(s)	62, 229, 853, 1576, 1660, 1723
BstV2I	GAAGAC	1 cut(s)	1015
BstX2I	RGATCY	2 cut(s)	63, 829
BstYI	RGATCY	2 cut(s)	63, 829
BstZ17I	GTATAC	1 cut(s)	817
Bsu36I	CCTNAGG	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	889
BsuRI	GGCC	3 cut(s)	170, 211, 1118
BtgI	CCRYGG	2 cut(s)	1137, 1319
BtgZI	GCGATG	1 cut(s)	1674
BtsCI	GGATG	8 cut(s)	419, 520, 985, 989, 1059, 1133, 1366, 1761
BtsI	GCAGTG	1 cut(s)	1200
BtsIMutI	CAGTG	4 cut(s)	1200, 1660, 1715, 1748
Cac8I	GCNNGC	5 cut(s)	1098, 1221, 1326, 1410, 1695
CaiI	CAGNNNCTG	1 cut(s)	1717
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	2 cut(s)	255, 1699
Cfr10I	RCCGGY	1 cut(s)	1100
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	4 cut(s)	917, 1156, 1527, 1772
CviQI	GTAC	4 cut(s)	917, 1156, 1527, 1772
DdeI	CTNAG	6 cut(s)	257, 357, 991, 1110, 1374, 1420
DpnI	GATC	6 cut(s)	43, 65, 344, 831, 1488, 1502
DpnII	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
Eam1104I	CTCTTC	1 cut(s)	1347
EarI	CTCTTC	1 cut(s)	1347
Ecl136II	GAGCTC	1 cut(s)	990
Eco130I	CCWWGG	2 cut(s)	1137, 1319
Eco24I	GRGCYC	1 cut(s)	992
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	2 cut(s)	498, 1419
Eco81I	CCTNAGG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	990
EcoRII	CCWGG	5 cut(s)	278, 563, 593, 1014, 1555
EcoT14I	CCWWGG	2 cut(s)	1137, 1319
EcoT22I	ATGCAT	1 cut(s)	1069
EcoT38I	GRGCYC	1 cut(s)	992
ErhI	CCWWGG	2 cut(s)	1137, 1319
FalI	AAGNNNNNCTT	2 cut(s)	1516, 1548
FaqI	GGGAC	1 cut(s)	1487
FauI	CCCGC	2 cut(s)	1184, 1702
FauNDI	CATATG	1 cut(s)	1608
FbaI	TGATCA	2 cut(s)	342, 1486
FblI	GTMKAC	2 cut(s)	7, 816
Fnu4HI	GCNGC	7 cut(s)	76, 243, 842, 1579, 1590, 1649, 1712
FokI	GGATG	8 cut(s)	426, 527, 992, 996, 1046, 1120, 1353, 1768
FriOI	GRGCYC	1 cut(s)	992
Fsp4HI	GCNGC	7 cut(s)	76, 243, 842, 1579, 1590, 1649, 1712
FspBI	CTAG	3 cut(s)	497, 1311, 1325
GlaI	GCGC	2 cut(s)	254, 1698
GluI	GCNGC	7 cut(s)	76, 243, 842, 1579, 1590, 1649, 1712
GsuI	CTGGAG	1 cut(s)	1578
HaeIII	GGCC	3 cut(s)	170, 211, 1118
HapII	CCGG	3 cut(s)	50, 1101, 1784
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	2 cut(s)	255, 1699
Hin6I	GCGC	2 cut(s)	253, 1697
HinP1I	GCGC	2 cut(s)	253, 1697
HincII	GTYRAC	2 cut(s)	736, 910
HindII	GTYRAC	2 cut(s)	736, 910
HindIII	AAGCTT	1 cut(s)	1401
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	3 cut(s)	50, 1101, 1784
HphI	GGTGA	2 cut(s)	1115, 1252
Hpy166II	GTNNAC	6 cut(s)	8, 736, 817, 910, 1156, 1200
Hpy188I	TCNGA	5 cut(s)	358, 396, 1045, 1491, 1573
Hpy188III	TCNNGA	7 cut(s)	34, 120, 164, 184, 363, 715, 884
Hpy8I	GTNNAC	6 cut(s)	8, 736, 817, 910, 1156, 1200
Hpy99I	CGWCG	2 cut(s)	377, 928
HpyAV	CCTTC	8 cut(s)	31, 40, 194, 779, 820, 1108, 1351, 1725
HpyCH4III	ACNGT	2 cut(s)	779, 1655
HpyCH4IV	ACGT	3 cut(s)	542, 656, 923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 259, 508, 1197, 1321, 1409
HpyF3I	CTNAG	6 cut(s)	257, 357, 991, 1110, 1374, 1420
HpySE526I	ACGT	3 cut(s)	542, 656, 923
HspAI	GCGC	2 cut(s)	253, 1697
Ksp22I	TGATCA	2 cut(s)	342, 1486
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
LmnI	GCTCC	4 cut(s)	19, 288, 987, 1216
Lsp1109I	GCAGC	6 cut(s)	62, 229, 853, 1576, 1660, 1723
LweI	GCATC	5 cut(s)	367, 629, 708, 768, 790
MaeI	CTAG	3 cut(s)	497, 1311, 1325
MaeII	ACGT	3 cut(s)	542, 656, 923
MaeIII	GTNAC	3 cut(s)	643, 1122, 1423
MalI	GATC	6 cut(s)	43, 65, 344, 831, 1488, 1502
MboI	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
MboII	GAAGA	7 cut(s)	209, 491, 944, 1015, 1165, 1343, 1364
MflI	RGATCY	2 cut(s)	63, 829
MhlI	GDGCHC	2 cut(s)	992, 1202
MluCI	AATT	4 cut(s)	128, 462, 935, 1267
MlyI	GAGTC	5 cut(s)	3, 368, 993, 1130, 1449
MmeI	TCCRAC	1 cut(s)	1068
Mph1103I	ATGCAT	1 cut(s)	1069
MseI	TTAA	8 cut(s)	333, 438, 488, 735, 861, 1445, 1523, 1701
MslI	CAYNNNNRTG	1 cut(s)	974
MspA1I	CMGCKG	1 cut(s)	1637
MspCI	CTTAAG	1 cut(s)	1522
MspI	CCGG	3 cut(s)	50, 1101, 1784
MspR9I	CCNGG	5 cut(s)	280, 565, 595, 1016, 1557
Mva1269I	GAATGC	3 cut(s)	142, 1067, 1074
MvaI	CCWGG	5 cut(s)	280, 565, 595, 1016, 1557
MvnI	CGCG	2 cut(s)	253, 1697
MwoI	GCNNNNNNNGC	6 cut(s)	146, 259, 508, 1197, 1321, 1409
NcoI	CCATGG	2 cut(s)	1137, 1319
NdeI	CATATG	1 cut(s)	1608
NdeII	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
NheI	GCTAGC	1 cut(s)	1324
NlaIV	GGNNCC	3 cut(s)	21, 65, 284
NmeAIII	GCCGAG	2 cut(s)	700, 1144
NmuCI	GTSAC	3 cut(s)	643, 1122, 1423
NsiI	ATGCAT	1 cut(s)	1069
NspI	RCATGY	2 cut(s)	1223, 1782
PaeI	GCATGC	1 cut(s)	1223
PagI	TCATGA	1 cut(s)	163
PciI	ACATGT	1 cut(s)	1778
PctI	GAATGC	3 cut(s)	142, 1067, 1074
PfeI	GAWTC	6 cut(s)	56, 320, 586, 847, 1257, 1451
PflMI	CCANNNNNTGG	1 cut(s)	1393
PkrI	GCNGC	7 cut(s)	77, 244, 843, 1580, 1591, 1650, 1713
PleI	GAGTC	5 cut(s)	3, 367, 993, 1129, 1448
PpsI	GAGTC	5 cut(s)	3, 367, 993, 1129, 1448
PscI	ACATGT	1 cut(s)	1778
PsiI	TTATAA	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	992
Psp6I	CCWGG	5 cut(s)	278, 563, 593, 1014, 1555
PspGI	CCWGG	5 cut(s)	278, 563, 593, 1014, 1555
PspN4I	GGNNCC	3 cut(s)	21, 65, 284
PspPI	GGNCC	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	1717
PsuI	RGATCY	2 cut(s)	63, 829
PvuII	CAGCTG	1 cut(s)	1637
RsaI	GTAC	4 cut(s)	918, 1157, 1528, 1773
RsaNI	GTAC	4 cut(s)	917, 1156, 1527, 1772
RseI	CAYNNNNRTG	1 cut(s)	974
SacI	GAGCTC	1 cut(s)	992
SaqAI	TTAA	8 cut(s)	333, 438, 488, 735, 861, 1445, 1523, 1701
SatI	GCNGC	7 cut(s)	76, 243, 842, 1579, 1590, 1649, 1712
Sau3AI	GATC	6 cut(s)	41, 63, 342, 829, 1486, 1500
Sau96I	GGNCC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	1528
SchI	GAGTC	5 cut(s)	3, 368, 993, 1130, 1449
ScrFI	CCNGG	5 cut(s)	280, 565, 595, 1016, 1557
SduI	GDGCHC	2 cut(s)	992, 1202
SfaNI	GCATC	5 cut(s)	367, 629, 708, 768, 790
SmiMI	CAYNNNNRTG	1 cut(s)	974
SmlI	CTYRAG	3 cut(s)	291, 805, 1522
SmoI	CTYRAG	3 cut(s)	291, 805, 1522
SphI	GCATGC	1 cut(s)	1223
Sse9I	AATT	4 cut(s)	128, 462, 935, 1267
SsiI	CCGC	4 cut(s)	1191, 1578, 1581, 1695
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	3 cut(s)	497, 1311, 1325
SstI	GAGCTC	1 cut(s)	992
StyD4I	CCNGG	5 cut(s)	278, 563, 593, 1014, 1555
StyI	CCWWGG	2 cut(s)	1137, 1319
TaaI	ACNGT	2 cut(s)	779, 1655
TaiI	ACGT	3 cut(s)	545, 659, 926
TaqI	TCGA	4 cut(s)	372, 714, 926, 1341
TaqII	GACCGA	1 cut(s)	1442
TasI	AATT	4 cut(s)	128, 462, 935, 1267
TatI	WGTACW	1 cut(s)	1526
TauI	GCSGC	1 cut(s)	1581
TfiI	GAWTC	6 cut(s)	56, 320, 586, 847, 1257, 1451
Tru1I	TTAA	8 cut(s)	333, 438, 488, 735, 861, 1445, 1523, 1701
Tru9I	TTAA	8 cut(s)	333, 438, 488, 735, 861, 1445, 1523, 1701
TscAI	CASTG	4 cut(s)	1207, 1660, 1722, 1748
TseFI	GTSAC	3 cut(s)	643, 1122, 1423
TseI	GCWGC	6 cut(s)	75, 242, 841, 1589, 1648, 1711
Tsp45I	GTSAC	3 cut(s)	643, 1122, 1423
TspDTI	ATGAA	6 cut(s)	149, 326, 398, 599, 839, 1355
TspGWI	ACGGA	2 cut(s)	166, 908
TspRI	CASTG	4 cut(s)	1207, 1660, 1722, 1748
Van91I	CCANNNNNTGG	1 cut(s)	1393
Vha464I	CTTAAG	1 cut(s)	1522
VneI	GTGCAC	1 cut(s)	1198
XapI	RAATTY	2 cut(s)	935, 1267
XceI	RCATGY	2 cut(s)	1223, 1782
XmiI	GTMKAC	2 cut(s)	7, 816
XspI	CTAG	3 cut(s)	497, 1311, 1325
ZrmI	AGTACT	1 cut(s)	1528
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.