Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 |
| malus_domestica | MD15G1183500.v1.1 |
| prunus_persica | Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 |
| pyrus_communis | pycom15g16530 |
| rosa_chinensis | RchiOBHm_Chr2g0090251 |
| rosa_laevigata | RLG00000016091 |
| rosa_multiflora | Rmu_co8459707.1_g000001 Rmu_sc0012828.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00151350 |
| rosa_rugosa | Rorug02G0005700 Rorug02G0005800 Rorug02G0005900 Rorug02G0006000 Rorug02G0006000 |
| rosa_samantha | Rh2AG051800 Rh2BG050400 Rh2CG052600 Rh2DG051700 |
| rosa_wichuraiana | Rw2G004510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 221 |
| Acc65I | GGTACC | 1 cut(s) | 1498 |
| AccB1I | GGYRCC | 1 cut(s) | 1498 |
| AccI | GTMKAC | 1 cut(s) | 628 |
| AciI | CCGC | 3 cut(s) | 253, 1408, 1599 |
| AclWI | GGATC | 2 cut(s) | 837, 1609 |
| AcsI | RAATTY | 2 cut(s) | 63, 935 |
| AcuI | CTGAAG | 4 cut(s) | 312, 332, 498, 1419 |
| AcyI | GRCGYC | 1 cut(s) | 10 |
| AfaI | GTAC | 6 cut(s) | 433, 818, 918, 1476, 1500, 1546 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 258, 537, 1293, 1294, 1574 |
| AflII | CTTAAG | 1 cut(s) | 1540 |
| AflIII | ACRYGT | 1 cut(s) | 1784 |
| AgsI | TTSAA | 7 cut(s) | 68, 120, 184, 268, 1027, 1273, 1635 |
| AjiI | CACGTC | 1 cut(s) | 1787 |
| AjnI | CCWGG | 5 cut(s) | 563, 593, 1014, 1108, 1573 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1044, 1076 |
| AluBI | AGCT | 8 cut(s) | 242, 502, 990, 1043, 1205, 1310, 1390, 1403 |
| AluI | AGCT | 8 cut(s) | 242, 502, 990, 1043, 1205, 1310, 1390, 1403 |
| Alw21I | GWGCWC | 2 cut(s) | 992, 1202 |
| Alw26I | GTCTC | 2 cut(s) | 680, 1277 |
| Alw44I | GTGCAC | 1 cut(s) | 1198 |
| AlwI | GGATC | 2 cut(s) | 837, 1609 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 899 |
| AoxI | GGCC | 1 cut(s) | 209 |
| ApaLI | GTGCAC | 1 cut(s) | 1198 |
| ApeKI | GCWGC | 2 cut(s) | 242, 1607 |
| ApoI | RAATTY | 2 cut(s) | 63, 935 |
| AseI | ATTAAT | 2 cut(s) | 345, 1524 |
| Asp718I | GGTACC | 1 cut(s) | 1498 |
| AspS9I | GGNCC | 1 cut(s) | 210 |
| AsuHPI | GGTGA | 2 cut(s) | 1115, 1423 |
| BaeGI | GKGCMC | 1 cut(s) | 1202 |
| BanI | GGYRCC | 1 cut(s) | 1498 |
| BanII | GRGCYC | 2 cut(s) | 992, 1002 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1323, 1355 |
| BbsI | GAAGAC | 1 cut(s) | 1015 |
| Bbv12I | GWGCWC | 2 cut(s) | 992, 1202 |
| BbvI | GCAGC | 2 cut(s) | 229, 1594 |
| BccI | CCATC | 4 cut(s) | 607, 896, 922, 1190 |
| BceAI | ACGGC | 1 cut(s) | 1612 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 972, 1006 |
| BciT130I | CCWGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| BciVI | GTATCC | 1 cut(s) | 1241 |
| BclI | TGATCA | 1 cut(s) | 1725 |
| BcoDI | GTCTC | 2 cut(s) | 680, 1277 |
| BfaI | CTAG | 3 cut(s) | 497, 833, 1311 |
| BfrI | CTTAAG | 1 cut(s) | 1540 |
| BfuI | GTATCC | 1 cut(s) | 1241 |
| BisI | GCNGC | 2 cut(s) | 243, 1608 |
| BlsI | GCNGC | 2 cut(s) | 244, 1609 |
| BmcAI | AGTACT | 2 cut(s) | 433, 1546 |
| Bme1390I | CCNGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| BmgBI | CACGTC | 1 cut(s) | 1787 |
| BmgT120I | GGNCC | 1 cut(s) | 210 |
| BmiI | GGNNCC | 2 cut(s) | 21, 1500 |
| BmrFI | CCNGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| BmsI | GCATC | 7 cut(s) | 367, 629, 708, 768, 850, 970, 1165 |
| BpiI | GAAGAC | 1 cut(s) | 1015 |
| BpmI | CTGGAG | 1 cut(s) | 1596 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1503 |
| BpuEI | CTTGAG | 2 cut(s) | 826, 1737 |
| BsaHI | GRCGYC | 1 cut(s) | 10 |
| BsaI | GGTCTC | 1 cut(s) | 1277 |
| BsaJI | CCNNGG | 2 cut(s) | 1137, 1319 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1569, 1599 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 258, 537, 1293, 1294, 1574 |
| Bse1I | ACTGG | 2 cut(s) | 99, 429 |
| Bse3DI | GCAATG | 3 cut(s) | 73, 345, 1257 |
| BseBI | CCWGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| BseDI | CCNNGG | 2 cut(s) | 1137, 1319 |
| BseGI | GGATG | 9 cut(s) | 419, 520, 841, 948, 985, 1059, 1156, 1552, 1767 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 258, 537, 1293, 1294, 1574 |
| BseMI | GCAATG | 3 cut(s) | 73, 345, 1257 |
| BseMII | CTCAG | 4 cut(s) | 666, 1110, 1362, 1494 |
| BseNI | ACTGG | 2 cut(s) | 99, 429 |
| BseRI | GAGGAG | 3 cut(s) | 275, 314, 419 |
| BseSI | GKGCMC | 1 cut(s) | 1202 |
| BseXI | GCAGC | 2 cut(s) | 229, 1594 |
| BsgI | GTGCAG | 1 cut(s) | 1786 |
| BshFI | GGCC | 1 cut(s) | 211 |
| BshNI | GGYRCC | 1 cut(s) | 1498 |
| BsiHKAI | GWGCWC | 2 cut(s) | 992, 1202 |
| BslFI | GGGAC | 1 cut(s) | 1505 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 258, 537, 1293, 1294, 1574 |
| BsmAI | GTCTC | 2 cut(s) | 680, 1277 |
| BsmFI | GGGAC | 1 cut(s) | 1505 |
| BsmI | GAATGC | 3 cut(s) | 1067, 1074, 1675 |
| BsnI | GGCC | 1 cut(s) | 211 |
| Bso31I | GGTCTC | 1 cut(s) | 1277 |
| Bsp1286I | GDGCHC | 3 cut(s) | 992, 1002, 1202 |
| Bsp1407I | TGTACA | 1 cut(s) | 816 |
| Bsp143I | GATC | 3 cut(s) | 829, 1601, 1725 |
| Bsp19I | CCATGG | 2 cut(s) | 1137, 1319 |
| BspACI | CCGC | 3 cut(s) | 253, 1408, 1599 |
| BspANI | GGCC | 1 cut(s) | 211 |
| BspCNI | CTCAG | 4 cut(s) | 667, 1111, 1363, 1495 |
| BspHI | TCATGA | 1 cut(s) | 1185 |
| BspLI | GGNNCC | 2 cut(s) | 21, 1500 |
| BspPI | GGATC | 2 cut(s) | 837, 1609 |
| BspT107I | GGYRCC | 1 cut(s) | 1498 |
| BspTI | CTTAAG | 1 cut(s) | 1540 |
| BspTNI | GGTCTC | 1 cut(s) | 1277 |
| BsrDI | GCAATG | 3 cut(s) | 73, 345, 1257 |
| BsrGI | TGTACA | 1 cut(s) | 816 |
| BsrI | ACTGG | 2 cut(s) | 99, 429 |
| BssECI | CCNNGG | 2 cut(s) | 1137, 1319 |
| BssMI | GATC | 3 cut(s) | 829, 1601, 1725 |
| BssNAI | GTATAC | 1 cut(s) | 629 |
| BssNI | GRCGYC | 1 cut(s) | 10 |
| BssT1I | CCWWGG | 2 cut(s) | 1137, 1319 |
| Bst1107I | GTATAC | 1 cut(s) | 629 |
| Bst2UI | CCWGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| Bst4CI | ACNGT | 1 cut(s) | 1661 |
| Bst6I | CTCTTC | 2 cut(s) | 1347, 1370 |
| BstACI | GRCGYC | 1 cut(s) | 10 |
| BstAFI | CTTAAG | 1 cut(s) | 1540 |
| BstAUI | TGTACA | 1 cut(s) | 816 |
| BstC8I | GCNNGC | 4 cut(s) | 1098, 1207, 1221, 1769 |
| BstDEI | CTNAG | 4 cut(s) | 675, 1119, 1371, 1503 |
| BstDSI | CCRYGG | 2 cut(s) | 1137, 1319 |
| BstF5I | GGATG | 9 cut(s) | 419, 520, 841, 948, 985, 1059, 1156, 1552, 1767 |
| BstKTI | GATC | 3 cut(s) | 832, 1604, 1728 |
| BstMAI | GTCTC | 2 cut(s) | 680, 1277 |
| BstMBI | GATC | 3 cut(s) | 829, 1601, 1725 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 508, 1206 |
| BstNI | CCWGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| BstNSI | RCATGY | 1 cut(s) | 1223 |
| BstSCI | CCNGG | 5 cut(s) | 563, 593, 1014, 1108, 1573 |
| BstSLI | GKGCMC | 1 cut(s) | 1202 |
| BstV1I | GCAGC | 2 cut(s) | 229, 1594 |
| BstV2I | GAAGAC | 1 cut(s) | 1015 |
| BstX2I | RGATCY | 2 cut(s) | 829, 1601 |
| BstYI | RGATCY | 2 cut(s) | 829, 1601 |
| BstZ17I | GTATAC | 1 cut(s) | 629 |
| BsuI | GTATCC | 1 cut(s) | 1241 |
| BsuRI | GGCC | 1 cut(s) | 211 |
| BtgI | CCRYGG | 2 cut(s) | 1137, 1319 |
| BtrI | CACGTC | 1 cut(s) | 1787 |
| BtsCI | GGATG | 9 cut(s) | 419, 520, 841, 948, 985, 1059, 1156, 1552, 1767 |
| BtsIMutI | CAGTG | 2 cut(s) | 897, 1721 |
| Cac8I | GCNNGC | 4 cut(s) | 1098, 1207, 1221, 1769 |
| CaiI | CAGNNNCTG | 1 cut(s) | 899 |
| CciI | TCATGA | 1 cut(s) | 1185 |
| Cfr13I | GGNCC | 1 cut(s) | 210 |
| CseI | GACGC | 1 cut(s) | 18 |
| Csp6I | GTAC | 6 cut(s) | 432, 817, 917, 1475, 1499, 1545 |
| CviQI | GTAC | 6 cut(s) | 432, 817, 917, 1475, 1499, 1545 |
| DdeI | CTNAG | 4 cut(s) | 675, 1119, 1371, 1503 |
| DpnI | GATC | 3 cut(s) | 831, 1603, 1727 |
| DpnII | GATC | 3 cut(s) | 829, 1601, 1725 |
| DraI | TTTAAA | 1 cut(s) | 489 |
| Eam1104I | CTCTTC | 2 cut(s) | 1347, 1370 |
| EarI | CTCTTC | 2 cut(s) | 1347, 1370 |
| EciI | GGCGGA | 1 cut(s) | 1614 |
| Ecl136II | GAGCTC | 1 cut(s) | 990 |
| Eco130I | CCWWGG | 2 cut(s) | 1137, 1319 |
| Eco24I | GRGCYC | 2 cut(s) | 992, 1002 |
| Eco31I | GGTCTC | 1 cut(s) | 1277 |
| Eco53kI | GAGCTC | 1 cut(s) | 990 |
| Eco57I | CTGAAG | 4 cut(s) | 312, 332, 498, 1419 |
| EcoICRI | GAGCTC | 1 cut(s) | 990 |
| EcoRI | GAATTC | 1 cut(s) | 63 |
| EcoRII | CCWGG | 5 cut(s) | 563, 593, 1014, 1108, 1573 |
| EcoT14I | CCWWGG | 2 cut(s) | 1137, 1319 |
| EcoT22I | ATGCAT | 2 cut(s) | 985, 1069 |
| EcoT38I | GRGCYC | 2 cut(s) | 992, 1002 |
| ErhI | CCWWGG | 2 cut(s) | 1137, 1319 |
| FaqI | GGGAC | 1 cut(s) | 1505 |
| FauI | CCCGC | 2 cut(s) | 260, 1401 |
| FauNDI | CATATG | 1 cut(s) | 1730 |
| FbaI | TGATCA | 1 cut(s) | 1725 |
| FblI | GTMKAC | 1 cut(s) | 628 |
| Fnu4HI | GCNGC | 2 cut(s) | 243, 1608 |
| FokI | GGATG | 9 cut(s) | 426, 527, 828, 955, 992, 1046, 1143, 1539, 1774 |
| FriOI | GRGCYC | 2 cut(s) | 992, 1002 |
| Fsp4HI | GCNGC | 2 cut(s) | 243, 1608 |
| FspBI | CTAG | 3 cut(s) | 497, 833, 1311 |
| GluI | GCNGC | 2 cut(s) | 243, 1608 |
| GsuI | CTGGAG | 1 cut(s) | 1596 |
| HaeIII | GGCC | 1 cut(s) | 211 |
| HgaI | GACGC | 1 cut(s) | 18 |
| Hin1I | GRCGYC | 1 cut(s) | 10 |
| HindIII | AAGCTT | 1 cut(s) | 1401 |
| HinfI | GANTC | 9 cut(s) | 41, 56, 320, 359, 482, 1121, 1440, 1451, 1750 |
| HphI | GGTGA | 2 cut(s) | 1115, 1423 |
| Hpy166II | GTNNAC | 5 cut(s) | 8, 629, 736, 817, 1200 |
| Hpy188I | TCNGA | 9 cut(s) | 292, 312, 358, 396, 1456, 1591, 1626, 1657, 1749 |
| Hpy188III | TCNNGA | 7 cut(s) | 60, 120, 363, 884, 1186, 1370, 1635 |
| Hpy8I | GTNNAC | 5 cut(s) | 8, 629, 736, 817, 1200 |
| HpyAV | CCTTC | 6 cut(s) | 31, 147, 194, 779, 820, 1351 |
| HpyCH4III | ACNGT | 1 cut(s) | 1661 |
| HpyCH4IV | ACGT | 1 cut(s) | 1786 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 508, 1206 |
| HpyF3I | CTNAG | 4 cut(s) | 675, 1119, 1371, 1503 |
| HpySE526I | ACGT | 1 cut(s) | 1786 |
| Hsp92I | GRCGYC | 1 cut(s) | 10 |
| KpnI | GGTACC | 1 cut(s) | 1502 |
| Ksp22I | TGATCA | 1 cut(s) | 1725 |
| Kzo9I | GATC | 3 cut(s) | 829, 1601, 1725 |
| LmnI | GCTCC | 3 cut(s) | 288, 987, 1216 |
| Lsp1109I | GCAGC | 2 cut(s) | 229, 1594 |
| LweI | GCATC | 7 cut(s) | 367, 629, 708, 768, 850, 970, 1165 |
| MaeI | CTAG | 3 cut(s) | 497, 833, 1311 |
| MaeII | ACGT | 1 cut(s) | 1786 |
| MaeIII | GTNAC | 3 cut(s) | 569, 643, 1122 |
| MalI | GATC | 3 cut(s) | 831, 1603, 1727 |
| MboI | GATC | 3 cut(s) | 829, 1601, 1725 |
| MflI | RGATCY | 2 cut(s) | 829, 1601 |
| MhlI | GDGCHC | 3 cut(s) | 992, 1002, 1202 |
| MluCI | AATT | 6 cut(s) | 63, 144, 462, 491, 935, 1267 |
| MlyI | GAGTC | 5 cut(s) | 35, 314, 1130, 1449, 1744 |
| Mph1103I | ATGCAT | 2 cut(s) | 985, 1069 |
| MseI | TTAA | 9 cut(s) | 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541 |
| MslI | CAYNNNNRTG | 3 cut(s) | 974, 1161, 1557 |
| MspA1I | CMGCKG | 1 cut(s) | 1205 |
| MspCI | CTTAAG | 1 cut(s) | 1540 |
| MspR9I | CCNGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| Mva1269I | GAATGC | 3 cut(s) | 1067, 1074, 1675 |
| MvaI | CCWGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 508, 1206 |
| NcoI | CCATGG | 2 cut(s) | 1137, 1319 |
| NdeI | CATATG | 1 cut(s) | 1730 |
| NdeII | GATC | 3 cut(s) | 829, 1601, 1725 |
| NlaIV | GGNNCC | 2 cut(s) | 21, 1500 |
| NmeAIII | GCCGAG | 1 cut(s) | 971 |
| NmuCI | GTSAC | 1 cut(s) | 1122 |
| NsiI | ATGCAT | 2 cut(s) | 985, 1069 |
| NspI | RCATGY | 1 cut(s) | 1223 |
| PaeI | GCATGC | 1 cut(s) | 1223 |
| PagI | TCATGA | 1 cut(s) | 1185 |
| PctI | GAATGC | 3 cut(s) | 1067, 1074, 1675 |
| PfeI | GAWTC | 4 cut(s) | 56, 359, 482, 1451 |
| PkrI | GCNGC | 2 cut(s) | 244, 1609 |
| PleI | GAGTC | 5 cut(s) | 35, 314, 1129, 1448, 1744 |
| PpsI | GAGTC | 5 cut(s) | 35, 314, 1129, 1448, 1744 |
| PshBI | ATTAAT | 2 cut(s) | 345, 1524 |
| PsiI | TTATAA | 1 cut(s) | 221 |
| Psp124BI | GAGCTC | 1 cut(s) | 992 |
| Psp6I | CCWGG | 5 cut(s) | 563, 593, 1014, 1108, 1573 |
| PspGI | CCWGG | 5 cut(s) | 563, 593, 1014, 1108, 1573 |
| PspN4I | GGNNCC | 2 cut(s) | 21, 1500 |
| PspPI | GGNCC | 1 cut(s) | 210 |
| PstNI | CAGNNNCTG | 1 cut(s) | 899 |
| PsuI | RGATCY | 2 cut(s) | 829, 1601 |
| PvuII | CAGCTG | 1 cut(s) | 1205 |
| RsaI | GTAC | 6 cut(s) | 433, 818, 918, 1476, 1500, 1546 |
| RsaNI | GTAC | 6 cut(s) | 432, 817, 917, 1475, 1499, 1545 |
| RseI | CAYNNNNRTG | 3 cut(s) | 974, 1161, 1557 |
| SacI | GAGCTC | 1 cut(s) | 992 |
| SaqAI | TTAA | 9 cut(s) | 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541 |
| SatI | GCNGC | 2 cut(s) | 243, 1608 |
| Sau3AI | GATC | 3 cut(s) | 829, 1601, 1725 |
| Sau96I | GGNCC | 1 cut(s) | 210 |
| ScaI | AGTACT | 2 cut(s) | 433, 1546 |
| SchI | GAGTC | 5 cut(s) | 35, 314, 1130, 1449, 1744 |
| ScrFI | CCNGG | 5 cut(s) | 565, 595, 1016, 1110, 1575 |
| SduI | GDGCHC | 3 cut(s) | 992, 1002, 1202 |
| SfaNI | GCATC | 7 cut(s) | 367, 629, 708, 768, 850, 970, 1165 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 974, 1161, 1557 |
| SmlI | CTYRAG | 3 cut(s) | 805, 1540, 1752 |
| SmoI | CTYRAG | 3 cut(s) | 805, 1540, 1752 |
| SphI | GCATGC | 1 cut(s) | 1223 |
| Sse9I | AATT | 6 cut(s) | 63, 144, 462, 491, 935, 1267 |
| SsiI | CCGC | 3 cut(s) | 253, 1408, 1599 |
| SspMI | CTAG | 3 cut(s) | 497, 833, 1311 |
| SstI | GAGCTC | 1 cut(s) | 992 |
| StyD4I | CCNGG | 5 cut(s) | 563, 593, 1014, 1108, 1573 |
| StyI | CCWWGG | 2 cut(s) | 1137, 1319 |
| TaaI | ACNGT | 1 cut(s) | 1661 |
| TaiI | ACGT | 1 cut(s) | 1789 |
| TaqII | GACCGA | 1 cut(s) | 1442 |
| TasI | AATT | 6 cut(s) | 63, 144, 462, 491, 935, 1267 |
| TatI | WGTACW | 3 cut(s) | 431, 816, 1544 |
| TfiI | GAWTC | 4 cut(s) | 56, 359, 482, 1451 |
| Tru1I | TTAA | 9 cut(s) | 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541 |
| Tru9I | TTAA | 9 cut(s) | 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541 |
| TscAI | CASTG | 2 cut(s) | 904, 1728 |
| TseFI | GTSAC | 1 cut(s) | 1122 |
| TseI | GCWGC | 2 cut(s) | 242, 1607 |
| Tsp45I | GTSAC | 1 cut(s) | 1122 |
| TspDTI | ATGAA | 6 cut(s) | 149, 180, 398, 839, 959, 1641 |
| TspRI | CASTG | 2 cut(s) | 904, 1728 |
| Vha464I | CTTAAG | 1 cut(s) | 1540 |
| VneI | GTGCAC | 1 cut(s) | 1198 |
| VspI | ATTAAT | 2 cut(s) | 345, 1524 |
| XapI | RAATTY | 2 cut(s) | 63, 935 |
| XceI | RCATGY | 1 cut(s) | 1223 |
| XmiI | GTMKAC | 1 cut(s) | 628 |
| XspI | CTAG | 3 cut(s) | 497, 833, 1311 |
| ZrmI | AGTACT | 2 cut(s) | 433, 1546 |
| Zsp2I | ATGCAT | 2 cut(s) | 985, 1069 |