Prupe.7G232600_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
20327103 .. 20331535
4433 bp
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UTR
Exon/CDS
Intron
Prupe.7G232600.2

Sequence Viewer

Length: 1800 bp
ATGGGTGGACGCCAAGAGGAACCACATTTGCAAAAGAAGGACTCAACTTTGGTAGATTCAGGAATTCAATCCCATTGCCTTGTATGTTTGGGCAAGACCAGTTGCCAAGTAGTTCGTTCAAGAACAAAACTTATGAATAGTCTAATTGCAAGAAGGAAGCCACATGAAGCCCAATCCATTTTCAAAAGTTTAGCAGAAGAAGGACACAGGCCCACTCTTATAACATACACAACTCTTGTAGCTGCCTTGACCCGCCAGAGGCGTTTCAAGTCTATTCCCTTGCTCCTCTCTGAAGTGGAGGAGAATGGTCTGAAGCCCGACTCAATACTTTTTAATGCAATGATTAATGCTTCCTCTGAATCTGGAAATATAGACGATGCCATGAAAATCTTTCAGAAAATGGAGGAGAGTGGATGTAAGCCCACAACCAGTACTTTTAACACTCTTATCAAAGGATATGGAATTGCTGGAAAACCTGAAGAATCTTTAAAATTGCTAGAGCTTATGTTGCAGGATGAGAATACGAAACCCAATGACAGGACATATAACATGATTGTTAGAGCCTGGTGTAACAAGAAGAAAATAAATCAAGCCTGGAATATGGTATATAAGATGGTTGCATCTGGTATACAACCTGATGTAGTTACTTACAACACATTGGCAAGGGCTTATGCTGAGAATGGAGAGACAAATATCGCTGAAAGATTGATGTTAGAGATGCAGAACAACAAAGTGAACCCCAATGAGCGAACTTGTGGCATCATTGTAAATGGATATTGTAAAGAAGGTAGCATGACAGAAGCCTTGAGGTTTGTGTACAGAATGAAGGATCTAGGGGTGCATCCAAATCTTGTTATTTTTAACTCTCTTATCAAGGGGTTTCTGGACATTACAGACACTGATGGAGTTGATGAGGTACTAACATTGATGGAAGAATTTGGGATGAAGCCAGATGTGATAACATTTAGCACCATAATGGATGCATGGAGCTCGGCAGGGCTCATGGAAAAATGCCAGGAGGTCTTCAATGACATGATAAAAGCTGACATAGAACCAGACATCCATGCATTCAGCATTCTTGCAAAAGGCTATGTGCGTGCTGGTGAGCCTGGTAAGGCTGAGTCACTTATGATTTCCATGGGAAAATATGGTGTGCATCCAAATGTTGTAATCTTCACAACCATCATGAGTGGGTGGTGCACAGCTGGCAAAATGGAGCATGCTTGGAGTATCCATGAGAAAATGTGTGAAATGAGCATTGCCCCCAATTTGAAAACTTTTGAGACCCTAATATGGGGATATGGAGAAGCTAGGCAACCATGGAAAGCAGAAGATTTGCTACATATAATGGAAGAGAAGGGTGTTATTCCTGAGAAGAGAACTATCCAGCTTGTCGCTGAAGCTTGGCGGGTGATAGGTTTAATGACCGAAGCCATGAGAGTCTTAAATGATTCAGAAGAAGAAAGGGAAGTGGTACAAAATAATAGGAGGGACAAGGTACCTGAGCAGAGTTTGGAGATGATTAATAGGAAACAAAACTTAAGTACTTCTCATCCTAATGTTTTGCCGATACCTGGAGTAGTTGTTTCTGATAACGGCGGATCTGCTGCCAACATAAGAGGTCAGATGATTTCAAGAGGATTTCAGTTTTCATCTGACAGTATGCAGAATGCTACTAAAACCATGTGTCTTGCTCATTCGTCTGCATTTAGAGTGCAACCACTGATCATATGTAGGAGGCAGTTTCAGACTCAAGTTGGGATGTGCAGGCAGTTTGTAAATACACGTCCTGTGATGTAA

Protein Analysis

600

Amino Acids

67.36

Weight (kDa)

7.16

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 1498
AccB1I GGYRCC 1 cut(s) 1498
AccI GTMKAC 1 cut(s) 628
AciI CCGC 3 cut(s) 253, 1408, 1599
AclWI GGATC 2 cut(s) 837, 1609
AcsI RAATTY 2 cut(s) 63, 935
AcuI CTGAAG 4 cut(s) 312, 332, 498, 1419
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 6 cut(s) 433, 818, 918, 1476, 1500, 1546
AfiI CCNNNNNNNGG 5 cut(s) 258, 537, 1293, 1294, 1574
AflII CTTAAG 1 cut(s) 1540
AflIII ACRYGT 1 cut(s) 1784
AgsI TTSAA 7 cut(s) 68, 120, 184, 268, 1027, 1273, 1635
AjiI CACGTC 1 cut(s) 1787
AjnI CCWGG 5 cut(s) 563, 593, 1014, 1108, 1573
AloI GAACNNNNNNTCC 2 cut(s) 1044, 1076
AluBI AGCT 8 cut(s) 242, 502, 990, 1043, 1205, 1310, 1390, 1403
AluI AGCT 8 cut(s) 242, 502, 990, 1043, 1205, 1310, 1390, 1403
Alw21I GWGCWC 2 cut(s) 992, 1202
Alw26I GTCTC 2 cut(s) 680, 1277
Alw44I GTGCAC 1 cut(s) 1198
AlwI GGATC 2 cut(s) 837, 1609
AlwNI CAGNNNCTG 1 cut(s) 899
AoxI GGCC 1 cut(s) 209
ApaLI GTGCAC 1 cut(s) 1198
ApeKI GCWGC 2 cut(s) 242, 1607
ApoI RAATTY 2 cut(s) 63, 935
AseI ATTAAT 2 cut(s) 345, 1524
Asp718I GGTACC 1 cut(s) 1498
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 1115, 1423
BaeGI GKGCMC 1 cut(s) 1202
BanI GGYRCC 1 cut(s) 1498
BanII GRGCYC 2 cut(s) 992, 1002
BarI GAAGNNNNNNTAC 2 cut(s) 1323, 1355
BbsI GAAGAC 1 cut(s) 1015
Bbv12I GWGCWC 2 cut(s) 992, 1202
BbvI GCAGC 2 cut(s) 229, 1594
BccI CCATC 4 cut(s) 607, 896, 922, 1190
BceAI ACGGC 1 cut(s) 1612
BcgI CGANNNNNNTGC 2 cut(s) 972, 1006
BciT130I CCWGG 5 cut(s) 565, 595, 1016, 1110, 1575
BciVI GTATCC 1 cut(s) 1241
BclI TGATCA 1 cut(s) 1725
BcoDI GTCTC 2 cut(s) 680, 1277
BfaI CTAG 3 cut(s) 497, 833, 1311
BfrI CTTAAG 1 cut(s) 1540
BfuI GTATCC 1 cut(s) 1241
BisI GCNGC 2 cut(s) 243, 1608
BlsI GCNGC 2 cut(s) 244, 1609
BmcAI AGTACT 2 cut(s) 433, 1546
Bme1390I CCNGG 5 cut(s) 565, 595, 1016, 1110, 1575
BmgBI CACGTC 1 cut(s) 1787
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 21, 1500
BmrFI CCNGG 5 cut(s) 565, 595, 1016, 1110, 1575
BmsI GCATC 7 cut(s) 367, 629, 708, 768, 850, 970, 1165
BpiI GAAGAC 1 cut(s) 1015
BpmI CTGGAG 1 cut(s) 1596
Bpu10I CCTNAGC 1 cut(s) 1503
BpuEI CTTGAG 2 cut(s) 826, 1737
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 1277
BsaJI CCNNGG 2 cut(s) 1137, 1319
BsaXI ACNNNNNCTCC 2 cut(s) 1569, 1599
Bsc4I CCNNNNNNNGG 5 cut(s) 258, 537, 1293, 1294, 1574
Bse1I ACTGG 2 cut(s) 99, 429
Bse3DI GCAATG 3 cut(s) 73, 345, 1257
BseBI CCWGG 5 cut(s) 565, 595, 1016, 1110, 1575
BseDI CCNNGG 2 cut(s) 1137, 1319
BseGI GGATG 9 cut(s) 419, 520, 841, 948, 985, 1059, 1156, 1552, 1767
BseLI CCNNNNNNNGG 5 cut(s) 258, 537, 1293, 1294, 1574
BseMI GCAATG 3 cut(s) 73, 345, 1257
BseMII CTCAG 4 cut(s) 666, 1110, 1362, 1494
BseNI ACTGG 2 cut(s) 99, 429
BseRI GAGGAG 3 cut(s) 275, 314, 419
BseSI GKGCMC 1 cut(s) 1202
BseXI GCAGC 2 cut(s) 229, 1594
BsgI GTGCAG 1 cut(s) 1786
BshFI GGCC 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 1498
BsiHKAI GWGCWC 2 cut(s) 992, 1202
BslFI GGGAC 1 cut(s) 1505
BslI CCNNNNNNNGG 5 cut(s) 258, 537, 1293, 1294, 1574
BsmAI GTCTC 2 cut(s) 680, 1277
BsmFI GGGAC 1 cut(s) 1505
BsmI GAATGC 3 cut(s) 1067, 1074, 1675
BsnI GGCC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 1277
Bsp1286I GDGCHC 3 cut(s) 992, 1002, 1202
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 3 cut(s) 829, 1601, 1725
Bsp19I CCATGG 2 cut(s) 1137, 1319
BspACI CCGC 3 cut(s) 253, 1408, 1599
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 4 cut(s) 667, 1111, 1363, 1495
BspHI TCATGA 1 cut(s) 1185
BspLI GGNNCC 2 cut(s) 21, 1500
BspPI GGATC 2 cut(s) 837, 1609
BspT107I GGYRCC 1 cut(s) 1498
BspTI CTTAAG 1 cut(s) 1540
BspTNI GGTCTC 1 cut(s) 1277
BsrDI GCAATG 3 cut(s) 73, 345, 1257
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 2 cut(s) 99, 429
BssECI CCNNGG 2 cut(s) 1137, 1319
BssMI GATC 3 cut(s) 829, 1601, 1725
BssNAI GTATAC 1 cut(s) 629
BssNI GRCGYC 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 1137, 1319
Bst1107I GTATAC 1 cut(s) 629
Bst2UI CCWGG 5 cut(s) 565, 595, 1016, 1110, 1575
Bst4CI ACNGT 1 cut(s) 1661
Bst6I CTCTTC 2 cut(s) 1347, 1370
BstACI GRCGYC 1 cut(s) 10
BstAFI CTTAAG 1 cut(s) 1540
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 4 cut(s) 1098, 1207, 1221, 1769
BstDEI CTNAG 4 cut(s) 675, 1119, 1371, 1503
BstDSI CCRYGG 2 cut(s) 1137, 1319
BstF5I GGATG 9 cut(s) 419, 520, 841, 948, 985, 1059, 1156, 1552, 1767
BstKTI GATC 3 cut(s) 832, 1604, 1728
BstMAI GTCTC 2 cut(s) 680, 1277
BstMBI GATC 3 cut(s) 829, 1601, 1725
BstMWI GCNNNNNNNGC 2 cut(s) 508, 1206
BstNI CCWGG 5 cut(s) 565, 595, 1016, 1110, 1575
BstNSI RCATGY 1 cut(s) 1223
BstSCI CCNGG 5 cut(s) 563, 593, 1014, 1108, 1573
BstSLI GKGCMC 1 cut(s) 1202
BstV1I GCAGC 2 cut(s) 229, 1594
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 2 cut(s) 829, 1601
BstYI RGATCY 2 cut(s) 829, 1601
BstZ17I GTATAC 1 cut(s) 629
BsuI GTATCC 1 cut(s) 1241
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 2 cut(s) 1137, 1319
BtrI CACGTC 1 cut(s) 1787
BtsCI GGATG 9 cut(s) 419, 520, 841, 948, 985, 1059, 1156, 1552, 1767
BtsIMutI CAGTG 2 cut(s) 897, 1721
Cac8I GCNNGC 4 cut(s) 1098, 1207, 1221, 1769
CaiI CAGNNNCTG 1 cut(s) 899
CciI TCATGA 1 cut(s) 1185
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 18
Csp6I GTAC 6 cut(s) 432, 817, 917, 1475, 1499, 1545
CviQI GTAC 6 cut(s) 432, 817, 917, 1475, 1499, 1545
DdeI CTNAG 4 cut(s) 675, 1119, 1371, 1503
DpnI GATC 3 cut(s) 831, 1603, 1727
DpnII GATC 3 cut(s) 829, 1601, 1725
DraI TTTAAA 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 1347, 1370
EarI CTCTTC 2 cut(s) 1347, 1370
EciI GGCGGA 1 cut(s) 1614
Ecl136II GAGCTC 1 cut(s) 990
Eco130I CCWWGG 2 cut(s) 1137, 1319
Eco24I GRGCYC 2 cut(s) 992, 1002
Eco31I GGTCTC 1 cut(s) 1277
Eco53kI GAGCTC 1 cut(s) 990
Eco57I CTGAAG 4 cut(s) 312, 332, 498, 1419
EcoICRI GAGCTC 1 cut(s) 990
EcoRI GAATTC 1 cut(s) 63
EcoRII CCWGG 5 cut(s) 563, 593, 1014, 1108, 1573
EcoT14I CCWWGG 2 cut(s) 1137, 1319
EcoT22I ATGCAT 2 cut(s) 985, 1069
EcoT38I GRGCYC 2 cut(s) 992, 1002
ErhI CCWWGG 2 cut(s) 1137, 1319
FaqI GGGAC 1 cut(s) 1505
FauI CCCGC 2 cut(s) 260, 1401
FauNDI CATATG 1 cut(s) 1730
FbaI TGATCA 1 cut(s) 1725
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 243, 1608
FokI GGATG 9 cut(s) 426, 527, 828, 955, 992, 1046, 1143, 1539, 1774
FriOI GRGCYC 2 cut(s) 992, 1002
Fsp4HI GCNGC 2 cut(s) 243, 1608
FspBI CTAG 3 cut(s) 497, 833, 1311
GluI GCNGC 2 cut(s) 243, 1608
GsuI CTGGAG 1 cut(s) 1596
HaeIII GGCC 1 cut(s) 211
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 1401
HinfI GANTC 9 cut(s) 41, 56, 320, 359, 482, 1121, 1440, 1451, 1750
HphI GGTGA 2 cut(s) 1115, 1423
Hpy166II GTNNAC 5 cut(s) 8, 629, 736, 817, 1200
Hpy188I TCNGA 9 cut(s) 292, 312, 358, 396, 1456, 1591, 1626, 1657, 1749
Hpy188III TCNNGA 7 cut(s) 60, 120, 363, 884, 1186, 1370, 1635
Hpy8I GTNNAC 5 cut(s) 8, 629, 736, 817, 1200
HpyAV CCTTC 6 cut(s) 31, 147, 194, 779, 820, 1351
HpyCH4III ACNGT 1 cut(s) 1661
HpyCH4IV ACGT 1 cut(s) 1786
HpyF10VI GCNNNNNNNGC 2 cut(s) 508, 1206
HpyF3I CTNAG 4 cut(s) 675, 1119, 1371, 1503
HpySE526I ACGT 1 cut(s) 1786
Hsp92I GRCGYC 1 cut(s) 10
KpnI GGTACC 1 cut(s) 1502
Ksp22I TGATCA 1 cut(s) 1725
Kzo9I GATC 3 cut(s) 829, 1601, 1725
LmnI GCTCC 3 cut(s) 288, 987, 1216
Lsp1109I GCAGC 2 cut(s) 229, 1594
LweI GCATC 7 cut(s) 367, 629, 708, 768, 850, 970, 1165
MaeI CTAG 3 cut(s) 497, 833, 1311
MaeII ACGT 1 cut(s) 1786
MaeIII GTNAC 3 cut(s) 569, 643, 1122
MalI GATC 3 cut(s) 831, 1603, 1727
MboI GATC 3 cut(s) 829, 1601, 1725
MflI RGATCY 2 cut(s) 829, 1601
MhlI GDGCHC 3 cut(s) 992, 1002, 1202
MluCI AATT 6 cut(s) 63, 144, 462, 491, 935, 1267
MlyI GAGTC 5 cut(s) 35, 314, 1130, 1449, 1744
Mph1103I ATGCAT 2 cut(s) 985, 1069
MseI TTAA 9 cut(s) 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541
MslI CAYNNNNRTG 3 cut(s) 974, 1161, 1557
MspA1I CMGCKG 1 cut(s) 1205
MspCI CTTAAG 1 cut(s) 1540
MspR9I CCNGG 5 cut(s) 565, 595, 1016, 1110, 1575
Mva1269I GAATGC 3 cut(s) 1067, 1074, 1675
MvaI CCWGG 5 cut(s) 565, 595, 1016, 1110, 1575
MwoI GCNNNNNNNGC 2 cut(s) 508, 1206
NcoI CCATGG 2 cut(s) 1137, 1319
NdeI CATATG 1 cut(s) 1730
NdeII GATC 3 cut(s) 829, 1601, 1725
NlaIV GGNNCC 2 cut(s) 21, 1500
NmeAIII GCCGAG 1 cut(s) 971
NmuCI GTSAC 1 cut(s) 1122
NsiI ATGCAT 2 cut(s) 985, 1069
NspI RCATGY 1 cut(s) 1223
PaeI GCATGC 1 cut(s) 1223
PagI TCATGA 1 cut(s) 1185
PctI GAATGC 3 cut(s) 1067, 1074, 1675
PfeI GAWTC 4 cut(s) 56, 359, 482, 1451
PkrI GCNGC 2 cut(s) 244, 1609
PleI GAGTC 5 cut(s) 35, 314, 1129, 1448, 1744
PpsI GAGTC 5 cut(s) 35, 314, 1129, 1448, 1744
PshBI ATTAAT 2 cut(s) 345, 1524
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 992
Psp6I CCWGG 5 cut(s) 563, 593, 1014, 1108, 1573
PspGI CCWGG 5 cut(s) 563, 593, 1014, 1108, 1573
PspN4I GGNNCC 2 cut(s) 21, 1500
PspPI GGNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 2 cut(s) 829, 1601
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 6 cut(s) 433, 818, 918, 1476, 1500, 1546
RsaNI GTAC 6 cut(s) 432, 817, 917, 1475, 1499, 1545
RseI CAYNNNNRTG 3 cut(s) 974, 1161, 1557
SacI GAGCTC 1 cut(s) 992
SaqAI TTAA 9 cut(s) 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541
SatI GCNGC 2 cut(s) 243, 1608
Sau3AI GATC 3 cut(s) 829, 1601, 1725
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 2 cut(s) 433, 1546
SchI GAGTC 5 cut(s) 35, 314, 1130, 1449, 1744
ScrFI CCNGG 5 cut(s) 565, 595, 1016, 1110, 1575
SduI GDGCHC 3 cut(s) 992, 1002, 1202
SfaNI GCATC 7 cut(s) 367, 629, 708, 768, 850, 970, 1165
SmiMI CAYNNNNRTG 3 cut(s) 974, 1161, 1557
SmlI CTYRAG 3 cut(s) 805, 1540, 1752
SmoI CTYRAG 3 cut(s) 805, 1540, 1752
SphI GCATGC 1 cut(s) 1223
Sse9I AATT 6 cut(s) 63, 144, 462, 491, 935, 1267
SsiI CCGC 3 cut(s) 253, 1408, 1599
SspMI CTAG 3 cut(s) 497, 833, 1311
SstI GAGCTC 1 cut(s) 992
StyD4I CCNGG 5 cut(s) 563, 593, 1014, 1108, 1573
StyI CCWWGG 2 cut(s) 1137, 1319
TaaI ACNGT 1 cut(s) 1661
TaiI ACGT 1 cut(s) 1789
TaqII GACCGA 1 cut(s) 1442
TasI AATT 6 cut(s) 63, 144, 462, 491, 935, 1267
TatI WGTACW 3 cut(s) 431, 816, 1544
TfiI GAWTC 4 cut(s) 56, 359, 482, 1451
Tru1I TTAA 9 cut(s) 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541
Tru9I TTAA 9 cut(s) 333, 345, 438, 488, 861, 1421, 1445, 1524, 1541
TscAI CASTG 2 cut(s) 904, 1728
TseFI GTSAC 1 cut(s) 1122
TseI GCWGC 2 cut(s) 242, 1607
Tsp45I GTSAC 1 cut(s) 1122
TspDTI ATGAA 6 cut(s) 149, 180, 398, 839, 959, 1641
TspRI CASTG 2 cut(s) 904, 1728
Vha464I CTTAAG 1 cut(s) 1540
VneI GTGCAC 1 cut(s) 1198
VspI ATTAAT 2 cut(s) 345, 1524
XapI RAATTY 2 cut(s) 63, 935
XceI RCATGY 1 cut(s) 1223
XmiI GTMKAC 1 cut(s) 628
XspI CTAG 3 cut(s) 497, 833, 1311
ZrmI AGTACT 2 cut(s) 433, 1546
Zsp2I ATGCAT 2 cut(s) 985, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.