Rorug02G0005900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006901
Physical Location & Seq
Forward (+)
569817 .. 573167
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0005900.1

Sequence Viewer

Length: 1413 bp
ATGTTCAAACCCAGATGGGCGTTTGTTCTCACCATCCTCCTCAATCTTCATCTGGGTAGTGTTTTTGCTGCTATTCCCACAGACCCACTTGTCCAGCAGCGATTGGATAGAGTTCTTGGGCTTCCGGGCCAGACCTTCAACGTGAGCTTTGCACACTATGCTGGGTACGTCAATGTTAATGAAGAAGCTGGGAGGGCTCTCTTCTACTGGTTCGTTGAGGCTGCTGAGGACCCTGCTTCTAAGCCCCTTGTTCTTTGGCTAAATGGAGGACCTGGATGTTCATCAATTGCTTATGGGATGGCAGAGGAAGTTGGCCCATTTCATATTCATGCTGATGGGAAGACACTGTATTTGAATCCTTACTCTTGGAATCAAGTTGCTAACATTCTGTTTATTGATTCACCTGTTGGAGTTGGGTTTTCTTATTCAAACACATCCTCTGATTTGCTATCCAATGGAGATAAAAGGACTGCTAAAGACTCTCTGGCATTTTTGTTGAAGTGGCTTGAGCGCTTTCCCCAGTACAAAGGAAGGGAGTTTTATATCACAGGAGAGAGCTATGGAGGACATTATGTTCCTCAGCTAAGCCAAGCAATTGTGAAGTACAACTTGGCCACTAAGGAAAATTCAATTAATCTGAAGGGCTATATGGTGGGAAATGCTCTAACCGATGATTACCATGATCACTTGGGGGTTTTCCAGTTTATGTGGTCAGCTGGTTTGATCTCTGATCAAACATACAAGGCGCTGAACCTTTTTTGCGATTTCCAGTCATTCATACACACCTCAAATTCATGTGATAGTATATTAGACATTGCTAGTGCAGAACTTGGAAACATTGACCCTTACAGCATTTACACTCCTTCTTGCCCTGCTAATGTTAGCCAGTCAAATCGGCTGTTGAAACGAATGCATGTGGCTGGCCGTATCAATGAAAAGTATGATCCTTGCACTGAGGCACACTCAGTTGTATACTTCAATCTACCCGAGGTTCAAAAGGCCCTTCATGTTGATCGACACCATGCACCATCTAAATGGGCAACATGCAGTGAGGTGGTGTACGCTACTTGGAAGGATTCTCCTAGGACAGTGCTGGATGTCTACCGGGAGTTGATACATTCAGGACTTCGTATATGGATGTTCAGTGGTGATACAGATGCGGTAATCCCAGTTACATCTACCCGATACAGTATAGATTCCCTGAAGCTTCCAACTGTTAAACCTTGGCGTCCCTGGTATGATGATGGGCAGGTTGGAGGCTGGACTCAAGAATATGCTGGGCTGACATTCGTATCAGTGAGGGGAGCAGGCCATGAAGTCCCTCTGCACAGACCCAAGCTAGCTCTCGCACTTATCAAAAACTTCTTGTCAGGATCCTCAATGCCATCAGCACAGCTTCTCAGTGACTCCTAG

Protein Analysis

470

Amino Acids

52.49

Weight (kDa)

6.24

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 42 - 458 7.6e-151 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 1240
AccI GTMKAC 2 cut(s) 972, 1101
AciI CCGC 1 cut(s) 1160
AclWI GGATC 3 cut(s) 938, 1368, 1381
AcoI YGGCCR 2 cut(s) 612, 922
AcsI RAATTY 2 cut(s) 625, 790
AcuI CTGAAG 2 cut(s) 659, 1223
AcyI GRCGYC 1 cut(s) 1228
AfaI GTAC 4 cut(s) 167, 524, 605, 1061
AfeI AGCGCT 1 cut(s) 512
AgsI TTSAA 9 cut(s) 7, 139, 355, 429, 499, 630, 904, 979, 995
AjnI CCWGG 2 cut(s) 271, 1232
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AloI GAACNNNNNNTCC 2 cut(s) 558, 590
AluBI AGCT 9 cut(s) 147, 188, 558, 583, 716, 1207, 1339, 1343, 1396
AluI AGCT 9 cut(s) 147, 188, 558, 583, 716, 1207, 1339, 1343, 1396
AlwI GGATC 3 cut(s) 938, 1368, 1381
Ama87I CYCGRG 1 cut(s) 986
Aor51HI AGCGCT 1 cut(s) 512
AoxI GGCC 6 cut(s) 127, 313, 612, 922, 999, 1309
ApeKI GCWGC 3 cut(s) 68, 97, 221
ApoI RAATTY 2 cut(s) 625, 790
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AseI ATTAAT 1 cut(s) 633
AspA2I CCTAGG 1 cut(s) 1082
AspLEI GCGC 2 cut(s) 513, 748
AspS9I GGNCC 5 cut(s) 127, 229, 269, 314, 1000
AsuC2I CCSGG 2 cut(s) 126, 1106
AsuHPI GGTGA 3 cut(s) 22, 393, 1160
AsuNHI GCTAGC 1 cut(s) 1339
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 2 cut(s) 229, 269
AvrII CCTAGG 1 cut(s) 1082
BaeI ACNNNNGTAYC 2 cut(s) 1275, 1308
BalI TGGCCA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 1373
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 347
BbvCI CCTCAGC 2 cut(s) 225, 579
BbvI GCAGC 3 cut(s) 55, 109, 208
BccI CCATC 7 cut(s) 9, 41, 292, 329, 1036, 1238, 1393
BceAI ACGGC 1 cut(s) 909
BciT130I CCWGG 2 cut(s) 273, 1234
BclI TGATCA 2 cut(s) 682, 730
BcnI CCSGG 2 cut(s) 126, 1106
BfaI CTAG 4 cut(s) 819, 1083, 1340, 1411
BfoI RGCGCY 2 cut(s) 514, 749
BfuAI ACCTGC 1 cut(s) 1240
BisI GCNGC 3 cut(s) 69, 98, 222
BlnI CCTAGG 1 cut(s) 1082
BlpI GCTNAGC 1 cut(s) 584
BlsI GCNGC 3 cut(s) 70, 99, 223
Bme1390I CCNGG 4 cut(s) 126, 273, 1106, 1234
Bme18I GGWCC 2 cut(s) 229, 269
BmeT110I CYCGRG 1 cut(s) 986
BmgT120I GGNCC 5 cut(s) 127, 229, 269, 314, 1000
BmiI GGNNCC 2 cut(s) 231, 1375
BmrFI CCNGG 4 cut(s) 126, 273, 1106, 1234
BmrI ACTGGG 2 cut(s) 514, 1163
BmsI GCATC 1 cut(s) 1147
BmtI GCTAGC 1 cut(s) 1343
BmuI ACTGGG 2 cut(s) 514, 1163
BpiI GAAGAC 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 947, 979
Bpu10I CCTNAGC 2 cut(s) 225, 579
Bpu1102I GCTNAGC 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 527, 1251
BpuMI CCSGG 2 cut(s) 126, 1106
BsaBI GATNNNNATC 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 1228
BsaJI CCNNGG 4 cut(s) 987, 1082, 1223, 1232
Bse1I ACTGG 6 cut(s) 212, 520, 700, 769, 886, 1169
Bse3DI GCAATG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 280
BseBI CCWGG 2 cut(s) 273, 1234
BseDI CCNNGG 4 cut(s) 987, 1082, 1223, 1232
BseGI GGATG 6 cut(s) 33, 281, 303, 434, 1102, 1143
BseJI GATNNNNATC 1 cut(s) 280
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 4 cut(s) 216, 593, 945, 978
BseNI ACTGG 6 cut(s) 212, 520, 700, 769, 886, 1169
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 55, 109, 208
BseYI CCCAGC 3 cut(s) 161, 188, 1277
BsgI GTGCAG 2 cut(s) 843, 1310
BshFI GGCC 6 cut(s) 129, 315, 614, 924, 1001, 1311
BsiHKCI CYCGRG 1 cut(s) 986
BsiSI CCGG 2 cut(s) 125, 1105
BslFI GGGAC 2 cut(s) 1215, 1304
BsmFI GGGAC 2 cut(s) 1215, 1304
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 6 cut(s) 129, 315, 614, 924, 1001, 1311
BsoBI CYCGRG 1 cut(s) 986
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
Bsp1720I GCTNAGC 1 cut(s) 584
BspACI CCGC 1 cut(s) 1160
BspANI GGCC 6 cut(s) 129, 315, 614, 924, 1001, 1311
BspCNI CTCAG 5 cut(s) 217, 592, 946, 977, 1413
BspLI GGNNCC 2 cut(s) 231, 1375
BspMI ACCTGC 1 cut(s) 1240
BspOI GCTAGC 1 cut(s) 1343
BspPI GGATC 3 cut(s) 938, 1368, 1381
BsrDI GCAATG 1 cut(s) 813
BsrI ACTGG 6 cut(s) 212, 520, 700, 769, 886, 1169
BssECI CCNNGG 4 cut(s) 987, 1082, 1223, 1232
BssMI GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
BssNAI GTATAC 1 cut(s) 973
BssNI GRCGYC 1 cut(s) 1228
BssT1I CCWWGG 2 cut(s) 1082, 1223
Bst1107I GTATAC 1 cut(s) 973
Bst2UI CCWGG 2 cut(s) 273, 1234
Bst4CI ACNGT 4 cut(s) 348, 1090, 1190, 1216
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 1228
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 922, 1309, 1341
BstDEI CTNAG 8 cut(s) 225, 240, 579, 584, 618, 954, 964, 1400
BstF5I GGATG 6 cut(s) 33, 281, 303, 434, 1102, 1143
BstH2I RGCGCY 2 cut(s) 514, 749
BstHHI GCGC 2 cut(s) 513, 748
BstKTI GATC 6 cut(s) 685, 726, 733, 946, 1015, 1376
BstMBI GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
BstMWI GCNNNNNNNGC 2 cut(s) 158, 194
BstNI CCWGG 2 cut(s) 273, 1234
BstNSI RCATGY 2 cut(s) 917, 1047
BstSCI CCNGG 4 cut(s) 124, 271, 1104, 1232
BstV1I GCAGC 3 cut(s) 55, 109, 208
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 1373
BstXI CCANNNNNNTGG 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1373
BstZ17I GTATAC 1 cut(s) 973
BsuRI GGCC 6 cut(s) 129, 315, 614, 924, 1001, 1311
BtsCI GGATG 6 cut(s) 33, 281, 303, 434, 1102, 1143
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 7 cut(s) 344, 951, 1054, 1095, 1150, 1302, 1408
BveI ACCTGC 1 cut(s) 1240
Cac8I GCNNGC 3 cut(s) 922, 1309, 1341
CfoI GCGC 2 cut(s) 513, 748
Cfr13I GGNCC 5 cut(s) 127, 229, 269, 314, 1000
CseI GACGC 1 cut(s) 1217
Csp6I GTAC 4 cut(s) 166, 523, 604, 1060
CviAII CATG 8 cut(s) 329, 680, 795, 914, 1007, 1022, 1044, 1313
CviQI GTAC 4 cut(s) 166, 523, 604, 1060
DdeI CTNAG 8 cut(s) 225, 240, 579, 584, 618, 954, 964, 1400
DpnI GATC 6 cut(s) 684, 725, 732, 945, 1014, 1375
DpnII GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 2 cut(s) 612, 922
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 1082, 1223
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 229, 269
Eco47III AGCGCT 1 cut(s) 512
Eco57I CTGAAG 2 cut(s) 659, 1223
Eco88I CYCGRG 1 cut(s) 986
EcoO109I RGGNCCY 3 cut(s) 229, 269, 1000
EcoRII CCWGG 2 cut(s) 271, 1232
EcoT14I CCWWGG 2 cut(s) 1082, 1223
EcoT22I ATGCAT 1 cut(s) 915
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 2 cut(s) 1082, 1223
FaeI CATG 8 cut(s) 332, 683, 798, 917, 1010, 1025, 1047, 1316
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 2 cut(s) 1215, 1304
FatI CATG 8 cut(s) 328, 679, 794, 913, 1006, 1021, 1043, 1312
FbaI TGATCA 2 cut(s) 682, 730
FblI GTMKAC 2 cut(s) 972, 1101
Fnu4HI GCNGC 3 cut(s) 69, 98, 222
FokI GGATG 6 cut(s) 20, 288, 310, 421, 1109, 1150
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 3 cut(s) 69, 98, 222
FspBI CTAG 4 cut(s) 819, 1083, 1340, 1411
GlaI GCGC 2 cut(s) 512, 747
GluI GCNGC 3 cut(s) 69, 98, 222
GsaI CCCAGC 3 cut(s) 165, 192, 1281
HaeII RGCGCY 2 cut(s) 514, 749
HaeIII GGCC 6 cut(s) 129, 315, 614, 924, 1001, 1311
HapII CCGG 2 cut(s) 125, 1105
HgaI GACGC 1 cut(s) 1217
HhaI GCGC 2 cut(s) 513, 748
Hin1I GRCGYC 1 cut(s) 1228
Hin1II CATG 8 cut(s) 332, 683, 798, 917, 1010, 1025, 1047, 1316
Hin6I GCGC 2 cut(s) 511, 746
HinP1I GCGC 2 cut(s) 511, 746
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 8 cut(s) 355, 370, 398, 479, 1076, 1196, 1264, 1406
HpaII CCGG 2 cut(s) 125, 1105
HphI GGTGA 3 cut(s) 22, 393, 1160
Hpy166II GTNNAC 3 cut(s) 973, 1060, 1102
Hpy188I TCNGA 3 cut(s) 442, 639, 730
Hpy188III TCNNGA 3 cut(s) 1122, 1268, 1371
Hpy8I GTNNAC 3 cut(s) 973, 1060, 1102
HpyAV CCTTC 6 cut(s) 145, 525, 634, 873, 1013, 1066
HpyCH4III ACNGT 4 cut(s) 348, 1090, 1190, 1216
HpyCH4IV ACGT 2 cut(s) 141, 168
HpyCH4V TGCA 7 cut(s) 152, 824, 913, 951, 1025, 1047, 1327
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 194
HpyF3I CTNAG 8 cut(s) 225, 240, 579, 584, 618, 954, 964, 1400
HpySE526I ACGT 2 cut(s) 141, 168
Hsp92I GRCGYC 1 cut(s) 1228
Hsp92II CATG 8 cut(s) 332, 683, 798, 917, 1010, 1025, 1047, 1316
HspAI GCGC 2 cut(s) 511, 746
Ksp22I TGATCA 2 cut(s) 682, 730
Kzo9I GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
LmnI GCTCC 1 cut(s) 1304
Lsp1109I GCAGC 3 cut(s) 55, 109, 208
LweI GCATC 1 cut(s) 1147
MaeI CTAG 4 cut(s) 819, 1083, 1340, 1411
MaeII ACGT 2 cut(s) 141, 168
MaeIII GTNAC 2 cut(s) 1171, 1403
MalI GATC 6 cut(s) 684, 725, 732, 945, 1014, 1375
MboI GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
MboII GAAGA 4 cut(s) 38, 193, 194, 352
MfeI CAATTG 2 cut(s) 285, 594
MflI RGATCY 1 cut(s) 1373
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 5 cut(s) 285, 594, 625, 630, 790
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 3 cut(s) 473, 1258, 1400
MmeI TCCRAC 3 cut(s) 388, 1234, 1235
Mox20I TGGCCA 1 cut(s) 614
Mph1103I ATGCAT 1 cut(s) 915
MscI TGGCCA 1 cut(s) 614
MseI TTAA 3 cut(s) 177, 633, 1218
MslI CAYNNNNRTG 3 cut(s) 327, 333, 1033
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 2 cut(s) 125, 1105
MspR9I CCNGG 4 cut(s) 126, 273, 1106, 1234
MunI CAATTG 2 cut(s) 285, 594
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 2 cut(s) 273, 1234
MwoI GCNNNNNNNGC 2 cut(s) 158, 194
NciI CCSGG 2 cut(s) 126, 1106
NdeII GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
NheI GCTAGC 1 cut(s) 1339
NlaIII CATG 8 cut(s) 332, 683, 798, 917, 1010, 1025, 1047, 1316
NlaIV GGNNCC 2 cut(s) 231, 1375
NmuCI GTSAC 1 cut(s) 1403
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 2 cut(s) 917, 1047
PctI GAATGC 1 cut(s) 915
PfeI GAWTC 5 cut(s) 355, 370, 398, 1076, 1196
PkrI GCNGC 3 cut(s) 70, 99, 223
PleI GAGTC 3 cut(s) 473, 1258, 1400
PpsI GAGTC 3 cut(s) 473, 1258, 1400
PpuMI RGGWCCY 2 cut(s) 229, 269
PshBI ATTAAT 1 cut(s) 633
Psp5II RGGWCCY 2 cut(s) 229, 269
Psp6I CCWGG 2 cut(s) 271, 1232
PspFI CCCAGC 3 cut(s) 161, 188, 1277
PspGI CCWGG 2 cut(s) 271, 1232
PspN4I GGNNCC 2 cut(s) 231, 1375
PspPI GGNCC 5 cut(s) 127, 229, 269, 314, 1000
PspPPI RGGWCCY 2 cut(s) 229, 269
PsuI RGATCY 1 cut(s) 1373
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 4 cut(s) 167, 524, 605, 1061
RsaNI GTAC 4 cut(s) 166, 523, 604, 1060
RseI CAYNNNNRTG 3 cut(s) 327, 333, 1033
SaqAI TTAA 3 cut(s) 177, 633, 1218
SatI GCNGC 3 cut(s) 69, 98, 222
Sau3AI GATC 6 cut(s) 682, 723, 730, 943, 1012, 1373
Sau96I GGNCC 5 cut(s) 127, 229, 269, 314, 1000
SchI GAGTC 3 cut(s) 473, 1258, 1400
ScrFI CCNGG 4 cut(s) 126, 273, 1106, 1234
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 1 cut(s) 1147
SinI GGWCC 2 cut(s) 229, 269
SmiMI CAYNNNNRTG 3 cut(s) 327, 333, 1033
SmlI CTYRAG 2 cut(s) 506, 1266
SmoI CTYRAG 2 cut(s) 506, 1266
Sse9I AATT 5 cut(s) 285, 594, 625, 630, 790
SsiI CCGC 1 cut(s) 1160
SspMI CTAG 4 cut(s) 819, 1083, 1340, 1411
StyD4I CCNGG 4 cut(s) 124, 271, 1104, 1232
StyI CCWWGG 2 cut(s) 1082, 1223
TaaI ACNGT 4 cut(s) 348, 1090, 1190, 1216
TaiI ACGT 2 cut(s) 144, 171
TaqI TCGA 1 cut(s) 1015
TasI AATT 5 cut(s) 285, 594, 625, 630, 790
TatI WGTACW 2 cut(s) 522, 603
TfiI GAWTC 5 cut(s) 355, 370, 398, 1076, 1196
Tru1I TTAA 3 cut(s) 177, 633, 1218
Tru9I TTAA 3 cut(s) 177, 633, 1218
TscAI CASTG 7 cut(s) 351, 958, 1054, 1095, 1150, 1302, 1408
TseFI GTSAC 1 cut(s) 1403
TseI GCWGC 3 cut(s) 68, 97, 221
Tsp45I GTSAC 1 cut(s) 1403
TspRI CASTG 7 cut(s) 351, 958, 1054, 1095, 1150, 1302, 1408
VpaK11BI GGWCC 2 cut(s) 229, 269
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 2 cut(s) 625, 790
XceI RCATGY 2 cut(s) 917, 1047
XmaJI CCTAGG 1 cut(s) 1082
XmiI GTMKAC 2 cut(s) 972, 1101
XspI CTAG 4 cut(s) 819, 1083, 1340, 1411
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.