Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006901

Physical Location & Seq

Genomic Coordinates Reverse (-)

3595960 .. 3598127

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG050400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGGGTAGACACCAAGAGGGAACAATTAGTAATAGCGAATCTTCACTCAGGGAACCAAACCTGGGCAAGGACAAAGTGAAATCAAGCTCAACTCCAGTATCTCGCTGCCTTGTTTGTTTGGACAAGAACAGTTGTCGAGTAGTTCGTTCGAGAACAAAGCTGATGAATAATTTAATTTCAAGAGGGAAGCCTCATGAAGCTCATTCCATCTTCAATAATTTAGTAGAAGAAGGACATAGGCCAACTCTTATAACATACACAACTCTAGTAGCTGCCTTGACCCGCCAGAGGCGTTTCAAGTCAATTCCCTTGCTCCTCTCTGAAGTGGAGGAGAATGGTATGAAGCCTGATTCAATACTTTTCAATGCCATGATCAATGCTTTCTCCGAATCTGGAAATGTAAATGATGCCATGAAAATCTTTCGCAAAATGGAGGAGAGTGGATGTAAGCCCACAACCAGCACTTTTAACACCCTTATCAAAGGATACGGAATTGCTGGTAAACCTGAAGAATCTTTAAAATTGCTAGAGCTTATGTTGCAGGATGGGAATGCGAAACCGAATGACAGGACATATAATATTCTAGTTAGAGCCTGGTGTAACAAGAAGAGATTAGATCAAGCCTGGAATGTGGTGTATAAGATGGTTGCTTCTGGGATACAACCTGATGCAGTCACTTACAACACATTGGCAAGGGCTTATGCTGAGAATGGAGAGACCAGTAAAGCTGAAAGGTTGATGTTGGAGATGCAACACAACAAAGTTAACCCCAACGAGCGTACGTGTGGCATTGTTGTAAATGGATATTGTAAAGAAGGTAACATGACAGATGCTCTGAGGTTTGTATATAGAATGAAGGATCTTGGGGTGAAGCCAAATCTCGTCATTTTCAACTCTCTCATCAAGGGGTTTCTGAACATTACAGACACTGATGGAGTTGATGAGGTACTGACATTGATGGAAGAATTTGGGATAAAACCAGATGTGATAACATTTGGCACCATAATGAATGCATGGAGCTCAGCAGGGCTAATGGAAAAATGCCAGGAGATCTTTGATGACATGATAAAAGCGGACATAGAACCAGACATCCATTCATTTGGCATTCTTGCAAAAGGCTATGTGCGTGCTGGTGATCCAACGAAGGCCGAGTCACTTCTGAGTTTCATGGGCAAATCTGGTGTGCATCCAAATGTTGTAATCTTCACAACCATCATGAGTGGGTGGTGCACAGCAGGAAAAATGGAGCATGCTTGGGGTATCTTTGAGAAAATGTGTGAAATCGGAATCACCCCAAATGTGAAAACTTTTGAGACTCTAATATGGGGATATGGGGAAGCTAGGCAGCCATGGAAAGCAGAAGATTTGCTTCATATAATGGAAGAGAAGGGTATTGTTCCTGAAATGAGAACAATCGAGCTTGTTGCTGAGGCTTGGCGTGCTATAGGTTTAATGGATGAAGCGATGAGACTCCTCAATGAGTCAAAAGAGGATCCGGAAGTCATACTAAACAAGGCACCTGAACAGAGTTTAGAGGCAATTAGTCGAAAACAAAGCTTGAATACTTCTTATCCTAATGCTTTGCAGATACCTGGAGTAGTTGTTTCTGATAATGGCAGCTCTGCTGCTAACATAAGAGGCCAGATGATTGCAAAAAGATTCGAGTTTTCATCTGAAAGTATGCAGAATGTTACTAGAACCATGTGTGTTACTCGTACATCTGCACCAAGAGTGCAGCCACTGGTTATATGCAGGAGGCAGTTTCAAAGTCAAGTTGGGATATGCAGGCAGTTTGAAAATACATGTAGAGTGGTGTATATATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Pkinase

Protein Analysis

608

Amino Acids

68.09

Weight (kDa)

8.07

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	52 - 93	2.5e-06	PPR repeat family
PPR_3	PF13812	105 - 164	2.4e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	112 - 145	2e-08	PPR repeat
PPR_2	PF13041	116 - 163	6.2e-15	PPR repeat family
PPR	PF01535	120 - 149	1.7e-07	PPR repeat
PPR_long	PF17177	124 - 266	4.8e-13	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	140 - 244	7.8e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	148 - 179	3.6e-07	PPR repeat
PPR_2	PF13041	151 - 201	7.8e-11	PPR repeat family
PPR	PF01535	154 - 183	8.9e-07	PPR repeat
PPR_1	PF12854	186 - 216	3.8e-06	PPR repeat
PPR_2	PF13041	187 - 235	1.4e-12	PPR repeat family
PPR_long	PF17177	211 - 292	8.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	211 - 258	3.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	219 - 250	6.1e-06	PPR repeat
PPR_2	PF13041	222 - 271	2e-12	PPR repeat family
PPR_2	PF13041	261 - 305	2.1e-08	PPR repeat family
PPR_long	PF17177	277 - 382	9.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	284 - 339	3.6e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	292 - 338	2.9e-07	PPR repeat family
PPR_2	PF13041	327 - 375	8.4e-10	PPR repeat family
PPR_3	PF13812	351 - 407	3.7e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	386 - 445	6.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	394 - 425	1.8e-08	PPR repeat
PPR_2	PF13041	397 - 444	3.5e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006901)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540
malus_domestica	MD15G1183500.v1.1
prunus_persica	Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1
pyrus_communis	pycom15g16530
rosa_chinensis	RchiOBHm_Chr2g0090251
rosa_laevigata	RLG00000016091
rosa_multiflora	Rmu_co8459707.1_g000001 Rmu_sc0012828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151350
rosa_rugosa	Rorug02G0005700 Rorug02G0005800 Rorug02G0005900 Rorug02G0006000 Rorug02G0006000
rosa_samantha	Rh2AG051800 Rh2BG050400 Rh2CG052600 Rh2DG051700
rosa_wichuraiana	Rw2G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccB1I	GGYRCC	2 cut(s)	998, 1516
AccI	GTMKAC	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	1495
AciI	CCGC	2 cut(s)	283, 1073
AclWI	GGATC	4 cut(s)	867, 1130, 1487, 1500
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	2 cut(s)	342, 528
AfaI	GTAC	3 cut(s)	781, 948, 1717
AfiI	CCNNNNNNNGG	3 cut(s)	62, 67, 288
AflIII	ACRYGT	2 cut(s)	782, 1802
AgsI	TTSAA	9 cut(s)	180, 214, 298, 354, 364, 892, 1561, 1766, 1796
AjnI	CCWGG	5 cut(s)	60, 593, 623, 1044, 1591
AloI	GAACNNNNNNTCC	2 cut(s)	1074, 1106
Alw21I	GWGCWC	2 cut(s)	1022, 1232
Alw26I	GTCTC	3 cut(s)	710, 1307, 1462
Alw44I	GTGCAC	1 cut(s)	1228
AlwI	GGATC	4 cut(s)	867, 1130, 1487, 1500
AlwNI	CAGNNNCTG	2 cut(s)	929, 1741
Aor13HI	TCCGGA	1 cut(s)	1495
AoxI	GGCC	3 cut(s)	239, 1146, 1639
ApaLI	GTGCAC	1 cut(s)	1228
ApeKI	GCWGC	6 cut(s)	105, 272, 1345, 1617, 1625, 1735
ApoI	RAATTY	1 cut(s)	965
ArsI	GACNNNNNNTTYG	2 cut(s)	1136, 1168
AsuHPI	GGTGA	3 cut(s)	880, 1145, 1282
BaeGI	GKGCMC	1 cut(s)	1232
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BamHI	GGATCC	1 cut(s)	1492
BanI	GGYRCC	2 cut(s)	998, 1516
BanII	GRGCYC	1 cut(s)	1022
Bbv12I	GWGCWC	2 cut(s)	1022, 1232
BbvCI	CCTCAGC	1 cut(s)	1428
BbvI	GCAGC	6 cut(s)	92, 259, 1357, 1612, 1629, 1747
BccI	CCATC	6 cut(s)	215, 539, 637, 926, 952, 1220
BcgI	CGANNNNNNTGC	2 cut(s)	1406, 1440
BciT130I	CCWGG	5 cut(s)	62, 595, 625, 1046, 1593
BciVI	GTATCC	2 cut(s)	479, 651
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	3 cut(s)	710, 1307, 1462
BfaI	CTAG	5 cut(s)	266, 527, 584, 1341, 1695
BfmI	CTRYAG	1 cut(s)	1443
BfuI	GTATCC	2 cut(s)	479, 651
BglII	AGATCT	1 cut(s)	1050
BisI	GCNGC	6 cut(s)	106, 273, 1346, 1618, 1626, 1736
BlpI	GCTNAGC	1 cut(s)	1021
BlsI	GCNGC	6 cut(s)	107, 274, 1347, 1619, 1627, 1737
Bme1390I	CCNGG	5 cut(s)	62, 595, 625, 1046, 1593
BmiI	GGNNCC	4 cut(s)	54, 1000, 1494, 1518
BmrFI	CCNGG	5 cut(s)	62, 595, 625, 1046, 1593
BmsI	GCATC	5 cut(s)	397, 658, 738, 820, 1195
BpmI	CTGGAG	2 cut(s)	78, 1614
Bpu10I	CCTNAGC	1 cut(s)	1428
Bpu1102I	GCTNAGC	1 cut(s)	1021
BsaAI	YACGTR	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	61, 1349
BsaWI	WCCGGW	1 cut(s)	1495
BsaXI	ACNNNNNCTCC	2 cut(s)	1587, 1617
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 67, 288
Bse1I	ACTGG	3 cut(s)	95, 720, 1746
BseAI	TCCGGA	1 cut(s)	1495
BseBI	CCWGG	5 cut(s)	62, 595, 625, 1046, 1593
BseDI	CCNNGG	2 cut(s)	61, 1349
BseGI	GGATG	5 cut(s)	449, 550, 1089, 1186, 1462
BseLI	CCNNNNNNNGG	3 cut(s)	62, 67, 288
BseMII	CTCAG	6 cut(s)	61, 696, 827, 1035, 1151, 1419
BseNI	ACTGG	3 cut(s)	95, 720, 1746
BseRI	GAGGAG	4 cut(s)	305, 344, 449, 1463
BseSI	GKGCMC	1 cut(s)	1232
BseXI	GCAGC	6 cut(s)	92, 259, 1357, 1612, 1629, 1747
BsgI	GTGCAG	2 cut(s)	1707, 1754
BshFI	GGCC	3 cut(s)	241, 1148, 1641
BshNI	GGYRCC	2 cut(s)	998, 1516
BsiHKAI	GWGCWC	2 cut(s)	1022, 1232
BsiSI	CCGG	1 cut(s)	1496
BsiWI	CGTACG	1 cut(s)	779
BslI	CCNNNNNNNGG	3 cut(s)	62, 67, 288
BsmAI	GTCTC	3 cut(s)	710, 1307, 1462
BsmI	GAATGC	3 cut(s)	556, 1015, 1104
BsnI	GGCC	3 cut(s)	241, 1148, 1641
Bso31I	GGTCTC	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	1022, 1232
Bsp13I	TCCGGA	1 cut(s)	1495
Bsp143I	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
Bsp1720I	GCTNAGC	1 cut(s)	1021
Bsp19I	CCATGG	1 cut(s)	1349
BspACI	CCGC	2 cut(s)	283, 1073
BspANI	GGCC	3 cut(s)	241, 1148, 1641
BspCNI	CTCAG	6 cut(s)	60, 697, 828, 1034, 1152, 1420
BspEI	TCCGGA	1 cut(s)	1495
BspHI	TCATGA	2 cut(s)	193, 1215
BspLI	GGNNCC	4 cut(s)	54, 1000, 1494, 1518
BspPI	GGATC	4 cut(s)	867, 1130, 1487, 1500
BspT107I	GGYRCC	2 cut(s)	998, 1516
BspTNI	GGTCTC	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	95, 720, 1746
BssECI	CCNNGG	2 cut(s)	61, 1349
BssMI	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
BssT1I	CCWWGG	1 cut(s)	1349
Bst2UI	CCWGG	5 cut(s)	62, 595, 625, 1046, 1593
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	602, 1377
BstBAI	YACGTR	1 cut(s)	783
BstC8I	GCNNGC	4 cut(s)	1128, 1251, 1440, 1787
BstDEI	CTNAG	6 cut(s)	47, 705, 836, 1021, 1160, 1428
BstDSI	CCRYGG	1 cut(s)	1349
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	5 cut(s)	449, 550, 1089, 1186, 1462
BstKTI	GATC	6 cut(s)	375, 619, 862, 1053, 1138, 1495
BstMAI	GTCTC	3 cut(s)	710, 1307, 1462
BstMBI	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 1439
BstNI	CCWGG	5 cut(s)	62, 595, 625, 1046, 1593
BstNSI	RCATGY	2 cut(s)	1253, 1806
BstSCI	CCNGG	5 cut(s)	60, 593, 623, 1044, 1591
BstSFI	CTRYAG	1 cut(s)	1443
BstSLI	GKGCMC	1 cut(s)	1232
BstV1I	GCAGC	6 cut(s)	92, 259, 1357, 1612, 1629, 1747
BstX2I	RGATCY	3 cut(s)	859, 1050, 1492
BstXI	CCANNNNNNTGG	1 cut(s)	1100
BstYI	RGATCY	3 cut(s)	859, 1050, 1492
BsuI	GTATCC	2 cut(s)	479, 651
BsuRI	GGCC	3 cut(s)	241, 1148, 1641
BtgI	CCRYGG	1 cut(s)	1349
BtgZI	GCGATG	1 cut(s)	1478
BtsCI	GGATG	5 cut(s)	449, 550, 1089, 1186, 1462
BtsIMutI	CAGTG	2 cut(s)	927, 1739
Cac8I	GCNNGC	4 cut(s)	1128, 1251, 1440, 1787
CaiI	CAGNNNCTG	2 cut(s)	929, 1741
CciI	TCATGA	2 cut(s)	193, 1215
Csp6I	GTAC	3 cut(s)	780, 947, 1716
CviQI	GTAC	3 cut(s)	780, 947, 1716
DdeI	CTNAG	6 cut(s)	47, 705, 836, 1021, 1160, 1428
DpnI	GATC	6 cut(s)	374, 618, 861, 1052, 1137, 1494
DpnII	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
DraI	TTTAAA	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	602, 1377
EarI	CTCTTC	2 cut(s)	602, 1377
Ecl136II	GAGCTC	1 cut(s)	1020
Eco130I	CCWWGG	1 cut(s)	1349
Eco24I	GRGCYC	1 cut(s)	1022
Eco31I	GGTCTC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	1020
Eco57I	CTGAAG	2 cut(s)	342, 528
EcoICRI	GAGCTC	1 cut(s)	1020
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRII	CCWGG	5 cut(s)	60, 593, 623, 1044, 1591
EcoT14I	CCWWGG	1 cut(s)	1349
EcoT22I	ATGCAT	1 cut(s)	1015
EcoT38I	GRGCYC	1 cut(s)	1022
ErhI	CCWWGG	1 cut(s)	1349
FalI	AAGNNNNNCTT	2 cut(s)	1353, 1385
FauI	CCCGC	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	6 cut(s)	106, 273, 1346, 1618, 1626, 1736
FokI	GGATG	5 cut(s)	456, 557, 1076, 1173, 1469
FriOI	GRGCYC	1 cut(s)	1022
Fsp4HI	GCNGC	6 cut(s)	106, 273, 1346, 1618, 1626, 1736
FspBI	CTAG	5 cut(s)	266, 527, 584, 1341, 1695
GluI	GCNGC	6 cut(s)	106, 273, 1346, 1618, 1626, 1736
GsuI	CTGGAG	2 cut(s)	78, 1614
HaeIII	GGCC	3 cut(s)	241, 1148, 1641
HapII	CCGG	1 cut(s)	1496
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	1555
HpaI	GTTAAC	1 cut(s)	766
HpaII	CCGG	1 cut(s)	1496
HphI	GGTGA	3 cut(s)	880, 1145, 1282
Hpy166II	GTNNAC	4 cut(s)	8, 503, 766, 1230
Hpy188I	TCNGA	8 cut(s)	322, 388, 837, 915, 1161, 1286, 1609, 1675
Hpy188III	TCNNGA	7 cut(s)	150, 180, 194, 393, 1216, 1400, 1496
Hpy8I	GTNNAC	4 cut(s)	8, 503, 766, 1230
HpyAV	CCTTC	5 cut(s)	224, 809, 850, 1138, 1381
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 1439
HpyF3I	CTNAG	6 cut(s)	47, 705, 836, 1021, 1160, 1428
HpySE526I	ACGT	1 cut(s)	782
Kpn2I	TCCGGA	1 cut(s)	1495
Ksp22I	TGATCA	1 cut(s)	372
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
LmnI	GCTCC	3 cut(s)	318, 1017, 1246
Lsp1109I	GCAGC	6 cut(s)	92, 259, 1357, 1612, 1629, 1747
LweI	GCATC	5 cut(s)	397, 658, 738, 820, 1195
MaeI	CTAG	5 cut(s)	266, 527, 584, 1341, 1695
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	6 cut(s)	599, 673, 818, 1152, 1690, 1708
MalI	GATC	6 cut(s)	374, 618, 861, 1052, 1137, 1494
MboI	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
MboII	GAAGA	9 cut(s)	33, 202, 239, 521, 619, 974, 1195, 1373, 1394
MflI	RGATCY	3 cut(s)	859, 1050, 1492
MhlI	GDGCHC	2 cut(s)	1022, 1232
MluCI	AATT	9 cut(s)	24, 169, 174, 217, 303, 492, 521, 965, 1539
MlyI	GAGTC	4 cut(s)	1160, 1309, 1464, 1490
MmeI	TCCRAC	2 cut(s)	723, 1163
Mph1103I	ATGCAT	1 cut(s)	1015
MroI	TCCGGA	1 cut(s)	1495
MseI	TTAA	5 cut(s)	173, 468, 518, 765, 1451
MslI	CAYNNNNRTG	2 cut(s)	1004, 1191
MspI	CCGG	1 cut(s)	1496
MspR9I	CCNGG	5 cut(s)	62, 595, 625, 1046, 1593
Mva1269I	GAATGC	3 cut(s)	556, 1015, 1104
MvaI	CCWGG	5 cut(s)	62, 595, 625, 1046, 1593
MwoI	GCNNNNNNNGC	2 cut(s)	538, 1439
NcoI	CCATGG	1 cut(s)	1349
NdeII	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
NlaIV	GGNNCC	4 cut(s)	54, 1000, 1494, 1518
NmeAIII	GCCGAG	1 cut(s)	1174
NmuCI	GTSAC	2 cut(s)	673, 1152
NsiI	ATGCAT	1 cut(s)	1015
NspI	RCATGY	2 cut(s)	1253, 1806
PaeI	GCATGC	1 cut(s)	1253
PagI	TCATGA	2 cut(s)	193, 1215
PciI	ACATGT	1 cut(s)	1802
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	3 cut(s)	556, 1015, 1104
PfeI	GAWTC	6 cut(s)	38, 350, 389, 512, 1287, 1659
Pfl23II	CGTACG	1 cut(s)	779
PkrI	GCNGC	6 cut(s)	107, 274, 1347, 1619, 1627, 1737
PleI	GAGTC	4 cut(s)	1159, 1309, 1464, 1489
PpsI	GAGTC	4 cut(s)	1159, 1309, 1464, 1489
Ppu21I	YACGTR	1 cut(s)	783
PscI	ACATGT	1 cut(s)	1802
PsiI	TTATAA	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	1022
Psp6I	CCWGG	5 cut(s)	60, 593, 623, 1044, 1591
PspGI	CCWGG	5 cut(s)	60, 593, 623, 1044, 1591
PspLI	CGTACG	1 cut(s)	779
PspN4I	GGNNCC	4 cut(s)	54, 1000, 1494, 1518
PstNI	CAGNNNCTG	2 cut(s)	929, 1741
PsuI	RGATCY	3 cut(s)	859, 1050, 1492
RsaI	GTAC	3 cut(s)	781, 948, 1717
RsaNI	GTAC	3 cut(s)	780, 947, 1716
RseI	CAYNNNNRTG	2 cut(s)	1004, 1191
SacI	GAGCTC	1 cut(s)	1022
SaqAI	TTAA	5 cut(s)	173, 468, 518, 765, 1451
SatI	GCNGC	6 cut(s)	106, 273, 1346, 1618, 1626, 1736
Sau3AI	GATC	6 cut(s)	372, 616, 859, 1050, 1135, 1492
SchI	GAGTC	4 cut(s)	1160, 1309, 1464, 1490
ScrFI	CCNGG	5 cut(s)	62, 595, 625, 1046, 1593
SduI	GDGCHC	2 cut(s)	1022, 1232
SfaNI	GCATC	5 cut(s)	397, 658, 738, 820, 1195
SfcI	CTRYAG	1 cut(s)	1443
SmiMI	CAYNNNNRTG	2 cut(s)	1004, 1191
SphI	GCATGC	1 cut(s)	1253
Sse9I	AATT	9 cut(s)	24, 169, 174, 217, 303, 492, 521, 965, 1539
SsiI	CCGC	2 cut(s)	283, 1073
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	5 cut(s)	266, 527, 584, 1341, 1695
SstI	GAGCTC	1 cut(s)	1022
StyD4I	CCNGG	5 cut(s)	60, 593, 623, 1044, 1591
StyI	CCWWGG	1 cut(s)	1349
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	5 cut(s)	136, 149, 1416, 1546, 1662
TasI	AATT	9 cut(s)	24, 169, 174, 217, 303, 492, 521, 965, 1539
TfiI	GAWTC	6 cut(s)	38, 350, 389, 512, 1287, 1659
Tru1I	TTAA	5 cut(s)	173, 468, 518, 765, 1451
Tru9I	TTAA	5 cut(s)	173, 468, 518, 765, 1451
TscAI	CASTG	2 cut(s)	934, 1746
TseFI	GTSAC	2 cut(s)	673, 1152
TseI	GCWGC	6 cut(s)	105, 272, 1345, 1617, 1625, 1735
Tsp45I	GTSAC	2 cut(s)	673, 1152
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	934, 1746
VneI	GTGCAC	1 cut(s)	1228
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	965
XceI	RCATGY	2 cut(s)	1253, 1806
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	5 cut(s)	266, 527, 584, 1341, 1695
Zsp2I	ATGCAT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.