Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006901

Physical Location & Seq

Genomic Coordinates Forward (+)

4274605 .. 4278266

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGAATAATTTGATTTCAAGAGGGAAGCCTCATGAAGCTCATTCCATCTTCAATAATTTAGTAGAAGAAGGACATAGGCCAACTCTTATAACATACACAACTCTAGTTGCTGCCTTGACCCGCCAGAGGCGTTTCAAGTCAATTCCCTTGCTCCTCTCTGAAGTGGAGGAGAATGGTATGAAGCCTGATTCAATACTTTTCAATGCCATGATCAATGCTTTCTCCGAATCTGGAAATGTAAATGATGCCATGAAAATCTTTCGCAAAATGGAGGAGAGTGGATGTAAGCCCACAACCAGCACTTTTAACACCCTTATCAAAGGATATGGAATTGCTGGTAAACCTGAAGAATCTTTAAAATTGCTAGAGCTTATGTTGCAGGATGGGAATGCGAAACCGAATGACAGGACATATAATATTCTAGTTAGAGCCTGGTGTAACAAGAAGAGATTAGATCAAGCCTGGAATGTGGTGTATAAGATGGTTGCTTCTGGGATACAACCTGATGCAGTCACTTTCAACACATTGGCAAGGGCTTATGCTGAGAATGGAGAGACCAGTAAAGCTGAAAGGTTGATGTTGGAGATGCAACACAACAAAGTTAACCCCAACGAGCGTACGTGTGGCATTGTTGTAAATGGATATTGTAAAGAAGGTAACATGACAGATGCTCTGAGGTTTGTATATAGAATGAAGGATCTTGGGGTGAAGCCAAATCTCGTCATTTTCAACTCTCTCATCAAGGGGTTTCTGAACATTACAGACACTGATGGAGTTGATGAGGTACTGACATTGATGGAAGAATTTGGGATAAAACCAGATGTGATAACATTTAGCACCATAATGAATGCATGGAGCTCAGCAGGGCTAATGGAAAAATGCCAGGAGATCTTTGATGACATGATAAAAGCGGACATAGAACCAGACATCCATTCATTTGGCATTCTTGCAAAAGGCTATGTGCGTGCCGGTGATCCAGCGAAGGCCGAATCACTTCTGAGTTTCATGGGCAAATCTGGTGTGCATCCAAATGTTGTAATCTTCACAACCATCATGAGTGGGTGGTGCACAGCAGGAAAAATGGGGCATGCTTGGGGTACCTTTGAGAAAATGTGTGAAATCGGAATCACCCCAAATGTGAAAACTTTTGAGACTCTAATATGGGGATATGGGGAAGCTAGGCAGCCATGGAAAGCAGAAGATTTGCTTCATATAATGGAAGAGAAGGGTATTGTTCCTGAAATGAGAACAATCGAGCTTGTTGCTGAGGCTTGGCGTGCTATAGGTTTAATGGATGAAGCGATGAGACTCCTCAATGAGTCAAAAGAGGATCCGGAAGTCATACTAAACAAGGCACCTGAACAGAGTTTAGAGGCAATTAGTCGAAAACAAAGCTTGAATACTTCTTATCCTAATGCTTTGCAGATACCTGGAGTAGTTGTTTCTGATAATGGCAGCTCTGCTGCTAACATAAGAGGCCAGATGATTTCAAAAAGATTCGAGTTTTCATCTGAAAGTATGCAGAATGTTACTAGAACCATGTGTGTTACTCGTACATCTGCACTAAGAGTGCAGCCACTGGTTATGTGCAGGAGGCAGTTTCAAAGTCAAGTTGGGATATGCAGGCAGTTTGAAAATACATGTAGAGTGGTGTATATATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Pkinase

Protein Analysis

554

Amino Acids

62.08

Weight (kDa)

6.51

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	15 - 74	1.3e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	51 - 110	2.1e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	58 - 91	1.8e-08	PPR repeat
PPR_2	PF13041	62 - 109	5.3e-15	PPR repeat family
PPR	PF01535	66 - 95	1.5e-07	PPR repeat
PPR_long	PF17177	74 - 210	4e-12	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	86 - 190	1.6e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	94 - 125	3.2e-07	PPR repeat
PPR_2	PF13041	97 - 147	6.9e-11	PPR repeat family
PPR	PF01535	100 - 129	8e-07	PPR repeat
PPR_1	PF12854	132 - 162	3.4e-06	PPR repeat
PPR_2	PF13041	133 - 181	5.9e-12	PPR repeat family
PPR_3	PF13812	157 - 204	9.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	168 - 217	8.1e-12	PPR repeat family
PPR_3	PF13812	192 - 249	2.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	207 - 251	1.9e-08	PPR repeat family
PPR_long	PF17177	223 - 326	1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	230 - 285	6.4e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	238 - 284	3.6e-08	PPR repeat family
PPR_2	PF13041	273 - 321	2.9e-10	PPR repeat family
PPR_3	PF13812	297 - 353	3.6e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	332 - 391	1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	340 - 371	3.7e-07	PPR repeat
PPR_2	PF13041	343 - 390	4.3e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006901)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540
malus_domestica	MD15G1183500.v1.1
prunus_persica	Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1
pyrus_communis	pycom15g16530
rosa_chinensis	RchiOBHm_Chr2g0090251
rosa_laevigata	RLG00000016091
rosa_multiflora	Rmu_co8459707.1_g000001 Rmu_sc0012828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151350
rosa_rugosa	Rorug02G0005700 Rorug02G0005800 Rorug02G0005900 Rorug02G0006000 Rorug02G0006000
rosa_samantha	Rh2AG051800 Rh2BG050400 Rh2CG052600 Rh2DG051700
rosa_wichuraiana	Rw2G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
Acc65I	GGTACC	1 cut(s)	1097
AccB1I	GGYRCC	2 cut(s)	1097, 1354
AccIII	TCCGGA	1 cut(s)	1333
AciI	CCGC	2 cut(s)	121, 911
AclWI	GGATC	4 cut(s)	705, 968, 1325, 1338
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	2 cut(s)	180, 366
AfaI	GTAC	4 cut(s)	619, 786, 1099, 1555
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflIII	ACRYGT	2 cut(s)	620, 1640
AjnI	CCWGG	4 cut(s)	431, 461, 882, 1429
AloI	GAACNNNNNNTCC	2 cut(s)	912, 944
AluBI	AGCT	8 cut(s)	38, 370, 566, 858, 1178, 1258, 1395, 1458
AluI	AGCT	8 cut(s)	38, 370, 566, 858, 1178, 1258, 1395, 1458
Alw21I	GWGCWC	2 cut(s)	860, 1070
Alw26I	GTCTC	3 cut(s)	548, 1145, 1300
Alw44I	GTGCAC	1 cut(s)	1066
AlwI	GGATC	4 cut(s)	705, 968, 1325, 1338
AlwNI	CAGNNNCTG	2 cut(s)	767, 1579
Aor13HI	TCCGGA	1 cut(s)	1333
AoxI	GGCC	3 cut(s)	77, 984, 1477
ApaLI	GTGCAC	1 cut(s)	1066
ApeKI	GCWGC	5 cut(s)	110, 1183, 1455, 1463, 1573
ApoI	RAATTY	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	993
Asp718I	GGTACC	1 cut(s)	1097
AsuHPI	GGTGA	3 cut(s)	718, 983, 1120
BaeGI	GKGCMC	1 cut(s)	1070
BamHI	GGATCC	1 cut(s)	1330
BanI	GGYRCC	2 cut(s)	1097, 1354
BanII	GRGCYC	1 cut(s)	860
Bbv12I	GWGCWC	2 cut(s)	860, 1070
BbvCI	CCTCAGC	1 cut(s)	1266
BbvI	GCAGC	5 cut(s)	97, 1195, 1450, 1467, 1585
BccI	CCATC	6 cut(s)	53, 377, 475, 764, 790, 1058
BcgI	CGANNNNNNTGC	2 cut(s)	1244, 1278
BciT130I	CCWGG	4 cut(s)	433, 463, 884, 1431
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	548, 1145, 1300
BfaI	CTAG	5 cut(s)	104, 365, 422, 1179, 1533
BfmI	CTRYAG	1 cut(s)	1281
BfuI	GTATCC	1 cut(s)	489
BglII	AGATCT	1 cut(s)	888
BisI	GCNGC	5 cut(s)	111, 1184, 1456, 1464, 1574
BlpI	GCTNAGC	1 cut(s)	859
BlsI	GCNGC	5 cut(s)	112, 1185, 1457, 1465, 1575
Bme1390I	CCNGG	4 cut(s)	433, 463, 884, 1431
BmiI	GGNNCC	3 cut(s)	1099, 1332, 1356
BmrFI	CCNGG	4 cut(s)	433, 463, 884, 1431
BmsI	GCATC	5 cut(s)	235, 496, 576, 658, 1033
BpmI	CTGGAG	1 cut(s)	1452
Bpu10I	CCTNAGC	1 cut(s)	1266
Bpu1102I	GCTNAGC	1 cut(s)	859
BsaAI	YACGTR	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	1187
BsaWI	WCCGGW	1 cut(s)	1333
BsaXI	ACNNNNNCTCC	2 cut(s)	1425, 1455
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	968
Bse1I	ACTGG	2 cut(s)	558, 1584
BseAI	TCCGGA	1 cut(s)	1333
BseBI	CCWGG	4 cut(s)	433, 463, 884, 1431
BseDI	CCNNGG	1 cut(s)	1187
BseGI	GGATG	5 cut(s)	287, 388, 927, 1024, 1300
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	5 cut(s)	534, 665, 873, 989, 1257
BseNI	ACTGG	2 cut(s)	558, 1584
BseRI	GAGGAG	4 cut(s)	143, 182, 287, 1301
BseSI	GKGCMC	1 cut(s)	1070
BseXI	GCAGC	5 cut(s)	97, 1195, 1450, 1467, 1585
BsgI	GTGCAG	3 cut(s)	1545, 1592, 1609
BshFI	GGCC	3 cut(s)	79, 986, 1479
BshNI	GGYRCC	2 cut(s)	1097, 1354
BsiHKAI	GWGCWC	2 cut(s)	860, 1070
BsiSI	CCGG	2 cut(s)	969, 1334
BsiWI	CGTACG	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	3 cut(s)	548, 1145, 1300
BsmI	GAATGC	3 cut(s)	394, 853, 942
BsnI	GGCC	3 cut(s)	79, 986, 1479
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	860, 1070
Bsp13I	TCCGGA	1 cut(s)	1333
Bsp143I	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
Bsp1720I	GCTNAGC	1 cut(s)	859
Bsp19I	CCATGG	1 cut(s)	1187
BspACI	CCGC	2 cut(s)	121, 911
BspANI	GGCC	3 cut(s)	79, 986, 1479
BspCNI	CTCAG	5 cut(s)	535, 666, 872, 990, 1258
BspEI	TCCGGA	1 cut(s)	1333
BspHI	TCATGA	2 cut(s)	31, 1053
BspLI	GGNNCC	3 cut(s)	1099, 1332, 1356
BspPI	GGATC	4 cut(s)	705, 968, 1325, 1338
BspT107I	GGYRCC	2 cut(s)	1097, 1354
BspTNI	GGTCTC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	968
BsrI	ACTGG	2 cut(s)	558, 1584
BssAI	RCCGGY	1 cut(s)	968
BssECI	CCNNGG	1 cut(s)	1187
BssMI	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
BssT1I	CCWWGG	1 cut(s)	1187
Bst2UI	CCWGG	4 cut(s)	433, 463, 884, 1431
Bst6I	CTCTTC	2 cut(s)	440, 1215
BstBAI	YACGTR	1 cut(s)	621
BstC8I	GCNNGC	4 cut(s)	966, 1089, 1278, 1625
BstDEI	CTNAG	6 cut(s)	543, 674, 859, 998, 1266, 1565
BstDSI	CCRYGG	1 cut(s)	1187
BstF5I	GGATG	5 cut(s)	287, 388, 927, 1024, 1300
BstKTI	GATC	6 cut(s)	213, 457, 700, 891, 976, 1333
BstMAI	GTCTC	3 cut(s)	548, 1145, 1300
BstMBI	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 1277
BstNI	CCWGG	4 cut(s)	433, 463, 884, 1431
BstNSI	RCATGY	2 cut(s)	1091, 1644
BstSCI	CCNGG	4 cut(s)	431, 461, 882, 1429
BstSFI	CTRYAG	1 cut(s)	1281
BstSLI	GKGCMC	1 cut(s)	1070
BstV1I	GCAGC	5 cut(s)	97, 1195, 1450, 1467, 1585
BstX2I	RGATCY	3 cut(s)	697, 888, 1330
BstXI	CCANNNNNNTGG	1 cut(s)	938
BstYI	RGATCY	3 cut(s)	697, 888, 1330
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	79, 986, 1479
BtgI	CCRYGG	1 cut(s)	1187
BtgZI	GCGATG	1 cut(s)	1316
BtsCI	GGATG	5 cut(s)	287, 388, 927, 1024, 1300
BtsIMutI	CAGTG	2 cut(s)	765, 1577
Cac8I	GCNNGC	4 cut(s)	966, 1089, 1278, 1625
CaiI	CAGNNNCTG	2 cut(s)	767, 1579
CciI	TCATGA	2 cut(s)	31, 1053
Cfr10I	RCCGGY	1 cut(s)	968
Csp6I	GTAC	4 cut(s)	618, 785, 1098, 1554
CviQI	GTAC	4 cut(s)	618, 785, 1098, 1554
DdeI	CTNAG	6 cut(s)	543, 674, 859, 998, 1266, 1565
DpnI	GATC	6 cut(s)	212, 456, 699, 890, 975, 1332
DpnII	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	440, 1215
EarI	CTCTTC	2 cut(s)	440, 1215
Ecl136II	GAGCTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	1187
Eco24I	GRGCYC	1 cut(s)	860
Eco31I	GGTCTC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	858
Eco57I	CTGAAG	2 cut(s)	180, 366
EcoICRI	GAGCTC	1 cut(s)	858
EcoRII	CCWGG	4 cut(s)	431, 461, 882, 1429
EcoT14I	CCWWGG	1 cut(s)	1187
EcoT22I	ATGCAT	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	860
ErhI	CCWWGG	1 cut(s)	1187
FalI	AAGNNNNNCTT	2 cut(s)	1191, 1223
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	111, 1184, 1456, 1464, 1574
FokI	GGATG	5 cut(s)	294, 395, 914, 1011, 1307
FriOI	GRGCYC	1 cut(s)	860
Fsp4HI	GCNGC	5 cut(s)	111, 1184, 1456, 1464, 1574
FspBI	CTAG	5 cut(s)	104, 365, 422, 1179, 1533
GluI	GCNGC	5 cut(s)	111, 1184, 1456, 1464, 1574
GsuI	CTGGAG	1 cut(s)	1452
HaeIII	GGCC	3 cut(s)	79, 986, 1479
HapII	CCGG	2 cut(s)	969, 1334
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	1393
HinfI	GANTC	9 cut(s)	188, 227, 350, 989, 1125, 1153, 1308, 1319, 1497
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	2 cut(s)	969, 1334
HphI	GGTGA	3 cut(s)	718, 983, 1120
Hpy166II	GTNNAC	3 cut(s)	341, 604, 1068
Hpy188I	TCNGA	8 cut(s)	160, 226, 675, 753, 999, 1124, 1447, 1513
Hpy188III	TCNNGA	6 cut(s)	18, 32, 231, 1054, 1238, 1334
Hpy8I	GTNNAC	3 cut(s)	341, 604, 1068
HpyAV	CCTTC	5 cut(s)	62, 647, 688, 976, 1219
HpyCH4IV	ACGT	1 cut(s)	620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 1277
HpyF3I	CTNAG	6 cut(s)	543, 674, 859, 998, 1266, 1565
HpySE526I	ACGT	1 cut(s)	620
Kpn2I	TCCGGA	1 cut(s)	1333
KpnI	GGTACC	1 cut(s)	1101
Ksp22I	TGATCA	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
LmnI	GCTCC	2 cut(s)	156, 855
Lsp1109I	GCAGC	5 cut(s)	97, 1195, 1450, 1467, 1585
LweI	GCATC	5 cut(s)	235, 496, 576, 658, 1033
MaeI	CTAG	5 cut(s)	104, 365, 422, 1179, 1533
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	5 cut(s)	437, 511, 656, 1528, 1546
MalI	GATC	6 cut(s)	212, 456, 699, 890, 975, 1332
MboI	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
MboII	GAAGA	8 cut(s)	40, 77, 359, 457, 812, 1033, 1211, 1232
MflI	RGATCY	3 cut(s)	697, 888, 1330
MhlI	GDGCHC	2 cut(s)	860, 1070
MluCI	AATT	7 cut(s)	7, 55, 141, 330, 359, 803, 1377
MlyI	GAGTC	3 cut(s)	1147, 1302, 1328
MmeI	TCCRAC	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	853
MroI	TCCGGA	1 cut(s)	1333
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	4 cut(s)	306, 356, 603, 1289
MslI	CAYNNNNRTG	2 cut(s)	842, 1029
MspI	CCGG	2 cut(s)	969, 1334
MspR9I	CCNGG	4 cut(s)	433, 463, 884, 1431
Mva1269I	GAATGC	3 cut(s)	394, 853, 942
MvaI	CCWGG	4 cut(s)	433, 463, 884, 1431
MwoI	GCNNNNNNNGC	2 cut(s)	376, 1277
NcoI	CCATGG	1 cut(s)	1187
NdeII	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
NlaIV	GGNNCC	3 cut(s)	1099, 1332, 1356
NmuCI	GTSAC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	2 cut(s)	1091, 1644
PaeI	GCATGC	1 cut(s)	1091
PagI	TCATGA	2 cut(s)	31, 1053
PciI	ACATGT	1 cut(s)	1640
PctI	GAATGC	3 cut(s)	394, 853, 942
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	6 cut(s)	188, 227, 350, 989, 1125, 1497
Pfl23II	CGTACG	1 cut(s)	617
PkrI	GCNGC	5 cut(s)	112, 1185, 1457, 1465, 1575
PleI	GAGTC	3 cut(s)	1147, 1302, 1327
PpsI	GAGTC	3 cut(s)	1147, 1302, 1327
Ppu21I	YACGTR	1 cut(s)	621
PscI	ACATGT	1 cut(s)	1640
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	860
Psp6I	CCWGG	4 cut(s)	431, 461, 882, 1429
PspGI	CCWGG	4 cut(s)	431, 461, 882, 1429
PspLI	CGTACG	1 cut(s)	617
PspN4I	GGNNCC	3 cut(s)	1099, 1332, 1356
PstNI	CAGNNNCTG	2 cut(s)	767, 1579
PsuI	RGATCY	3 cut(s)	697, 888, 1330
RsaI	GTAC	4 cut(s)	619, 786, 1099, 1555
RsaNI	GTAC	4 cut(s)	618, 785, 1098, 1554
RseI	CAYNNNNRTG	2 cut(s)	842, 1029
SacI	GAGCTC	1 cut(s)	860
SaqAI	TTAA	4 cut(s)	306, 356, 603, 1289
SatI	GCNGC	5 cut(s)	111, 1184, 1456, 1464, 1574
Sau3AI	GATC	6 cut(s)	210, 454, 697, 888, 973, 1330
SchI	GAGTC	3 cut(s)	1147, 1302, 1328
ScrFI	CCNGG	4 cut(s)	433, 463, 884, 1431
SduI	GDGCHC	2 cut(s)	860, 1070
SfaNI	GCATC	5 cut(s)	235, 496, 576, 658, 1033
SfcI	CTRYAG	1 cut(s)	1281
SmiMI	CAYNNNNRTG	2 cut(s)	842, 1029
SphI	GCATGC	1 cut(s)	1091
Sse9I	AATT	7 cut(s)	7, 55, 141, 330, 359, 803, 1377
SsiI	CCGC	2 cut(s)	121, 911
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	5 cut(s)	104, 365, 422, 1179, 1533
SstI	GAGCTC	1 cut(s)	860
StyD4I	CCNGG	4 cut(s)	431, 461, 882, 1429
StyI	CCWWGG	1 cut(s)	1187
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	3 cut(s)	1254, 1384, 1500
TasI	AATT	7 cut(s)	7, 55, 141, 330, 359, 803, 1377
TfiI	GAWTC	6 cut(s)	188, 227, 350, 989, 1125, 1497
Tru1I	TTAA	4 cut(s)	306, 356, 603, 1289
Tru9I	TTAA	4 cut(s)	306, 356, 603, 1289
TscAI	CASTG	2 cut(s)	772, 1584
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	5 cut(s)	110, 1183, 1455, 1463, 1573
Tsp45I	GTSAC	1 cut(s)	511
TspRI	CASTG	2 cut(s)	772, 1584
VneI	GTGCAC	1 cut(s)	1066
XapI	RAATTY	1 cut(s)	803
XceI	RCATGY	2 cut(s)	1091, 1644
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	5 cut(s)	104, 365, 422, 1179, 1533
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.