Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8459707.1

Orthogroup ID

OG0006901

Physical Location & Seq

Genomic Coordinates Reverse (-)

54 .. 1658

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8459707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

atgaagcctgattcaatacttttcaatgccatgatcaatgctttctccgaatctggaaatgtaaatgatgccatgaaaatctttcgcaaaatggaggagagtggatgtaagcccacaaccagcacttttaacacccttatcaaaggatatggaattgctggtaaacctgaagaatctttaaaattgctagagcttatgttgcaggatgggaatgcgaaaccgaatgacaggacatataatattctagttagagcctggtgtaacaagaagagattagatcaagcctggaatgtggtgtataagatggttgcttctgggatacaacctgatgcagtcactttcaacacattggcaagggcttatgctgagaatggagagaccagtaaagctgaaaggttgatgttggagatgcaacacaacaaagttaatcccaacgagcgtacgtgtggcattgttgtaaatggatattgtaaagaaggtaacatgacagatgctctgaggtttgtatatagaatgaaggatcttggggtgaagccaaatctcgtcattttcaactctctcatcaaggggtttctgaacattacagacactgatggagttgatgaggtactgacattgatggaagaatttgggataaaaccagatgtgataacatttagcaccataatgaatgcatggagctcagcagggctaatggaaaaatgccaggagatctttgatgacatgataaaagcggacatagaaccagacatccattcatttggcattcttgcaaaaggctatgtgcgtgccggtgatccagcgaaggccgagtcacttctgagtttcatgggcaaatctggtgtgcatccaaatgttgtaatcttcacaaccatcatgagtgggtggtgcacagcaggaaaaatggagcatgcttggggtatctttgagaaaatgtgtgaaatcggaatcaccccaaatgtgaaaacttttgagactctaatatggggatatggggaagctagacagccatggaaagcagaagatttgcttcatataatggaagagaagggtattgttcctgaaatgagaacaatcgagcttgttgctgaggcttggcgtgctataggtttaatggatgaagcgatgagactcctcaatgagtcaaaagaggatccggaagtcatactaaacaaggcacctgaacagagtttagaggcaattagtcgaaaacaaagcttgaatacttcttatcctaatgctttgcagatacctggagtagttgtttctgataatggcagctctgctgctaacataagaggccagatgatttcaaaaagattcgagttttcatctgaaagtatgcagaatgttactagaaccatgtgtgttactcgtacatctgcactaagagtgcagccactggttatgtgcaggaggcagtttcaaagtcaagttgggatatgcaggcagtttgaaaatacatgtagagtggtgtatatatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Pkinase

Protein Analysis

495

Amino Acids

55.47

Weight (kDa)

5.94

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006901)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540 FvH4_1g04540
malus_domestica	MD15G1183500.v1.1
prunus_persica	Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1 Prupe.7G232600_v2.0.a1
pyrus_communis	pycom15g16530
rosa_chinensis	RchiOBHm_Chr2g0090251
rosa_laevigata	RLG00000016091
rosa_multiflora	Rmu_co8459707.1_g000001 Rmu_sc0012828.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151350
rosa_rugosa	Rorug02G0005700 Rorug02G0005800 Rorug02G0005900 Rorug02G0006000 Rorug02G0006000
rosa_samantha	Rh2AG051800 Rh2BG050400 Rh2CG052600 Rh2DG051700
rosa_wichuraiana	Rw2G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1177
AccIII	TCCGGA	1 cut(s)	1156
AciI	CCGC	1 cut(s)	734
AclWI	GGATC	4 cut(s)	528, 791, 1148, 1161
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	3 cut(s)	442, 609, 1378
AflIII	ACRYGT	2 cut(s)	443, 1463
AgsI	TTSAA	8 cut(s)	15, 25, 343, 553, 1222, 1314, 1427, 1457
AjnI	CCWGG	4 cut(s)	254, 284, 705, 1252
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	7 cut(s)	193, 389, 681, 1001, 1081, 1218, 1281
AluI	AGCT	7 cut(s)	193, 389, 681, 1001, 1081, 1218, 1281
Alw21I	GWGCWC	2 cut(s)	683, 893
Alw26I	GTCTC	3 cut(s)	371, 968, 1123
Alw44I	GTGCAC	1 cut(s)	889
AlwI	GGATC	4 cut(s)	528, 791, 1148, 1161
AlwNI	CAGNNNCTG	2 cut(s)	590, 1402
Aor13HI	TCCGGA	1 cut(s)	1156
AoxI	GGCC	2 cut(s)	807, 1300
ApaLI	GTGCAC	1 cut(s)	889
ApeKI	GCWGC	3 cut(s)	1278, 1286, 1396
ApoI	RAATTY	1 cut(s)	626
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AsuHPI	GGTGA	3 cut(s)	541, 806, 943
BaeGI	GKGCMC	1 cut(s)	893
BamHI	GGATCC	1 cut(s)	1153
BanI	GGYRCC	1 cut(s)	1177
BanII	GRGCYC	1 cut(s)	683
Bbv12I	GWGCWC	2 cut(s)	683, 893
BbvCI	CCTCAGC	1 cut(s)	1089
BbvI	GCAGC	3 cut(s)	1273, 1290, 1408
BccI	CCATC	5 cut(s)	200, 298, 587, 613, 881
BcgI	CGANNNNNNTGC	2 cut(s)	1067, 1101
BciT130I	CCWGG	4 cut(s)	256, 286, 707, 1254
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	371, 968, 1123
BfaI	CTAG	4 cut(s)	188, 245, 1002, 1356
BfmI	CTRYAG	1 cut(s)	1104
BfuI	GTATCC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	711
BisI	GCNGC	3 cut(s)	1279, 1287, 1397
BlpI	GCTNAGC	1 cut(s)	682
BlsI	GCNGC	3 cut(s)	1280, 1288, 1398
Bme1390I	CCNGG	4 cut(s)	256, 286, 707, 1254
BmiI	GGNNCC	2 cut(s)	1155, 1179
BmrFI	CCNGG	4 cut(s)	256, 286, 707, 1254
BmsI	GCATC	5 cut(s)	58, 319, 399, 481, 856
BpmI	CTGGAG	1 cut(s)	1275
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu1102I	GCTNAGC	1 cut(s)	682
BsaAI	YACGTR	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	1010
BsaWI	WCCGGW	1 cut(s)	1156
BsaXI	ACNNNNNCTCC	2 cut(s)	1248, 1278
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	2 cut(s)	381, 1407
BseAI	TCCGGA	1 cut(s)	1156
BseBI	CCWGG	4 cut(s)	256, 286, 707, 1254
BseDI	CCNNGG	1 cut(s)	1010
BseGI	GGATG	5 cut(s)	110, 211, 750, 847, 1123
BseMII	CTCAG	5 cut(s)	357, 488, 696, 812, 1080
BseNI	ACTGG	2 cut(s)	381, 1407
BseRI	GAGGAG	2 cut(s)	110, 1124
BseSI	GKGCMC	1 cut(s)	893
BseXI	GCAGC	3 cut(s)	1273, 1290, 1408
BsgI	GTGCAG	3 cut(s)	1368, 1415, 1432
BshFI	GGCC	2 cut(s)	809, 1302
BshNI	GGYRCC	1 cut(s)	1177
BsiHKAI	GWGCWC	2 cut(s)	683, 893
BsiSI	CCGG	2 cut(s)	792, 1157
BsiWI	CGTACG	1 cut(s)	440
BsmAI	GTCTC	3 cut(s)	371, 968, 1123
BsmI	GAATGC	3 cut(s)	217, 676, 765
BsnI	GGCC	2 cut(s)	809, 1302
Bso31I	GGTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	683, 893
Bsp13I	TCCGGA	1 cut(s)	1156
Bsp143I	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
Bsp1720I	GCTNAGC	1 cut(s)	682
Bsp19I	CCATGG	1 cut(s)	1010
BspACI	CCGC	1 cut(s)	734
BspANI	GGCC	2 cut(s)	809, 1302
BspCNI	CTCAG	5 cut(s)	358, 489, 695, 813, 1081
BspEI	TCCGGA	1 cut(s)	1156
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	2 cut(s)	1155, 1179
BspPI	GGATC	4 cut(s)	528, 791, 1148, 1161
BspT107I	GGYRCC	1 cut(s)	1177
BspTNI	GGTCTC	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	2 cut(s)	381, 1407
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	1 cut(s)	1010
BssMI	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
BssT1I	CCWWGG	1 cut(s)	1010
Bst2UI	CCWGG	4 cut(s)	256, 286, 707, 1254
Bst6I	CTCTTC	2 cut(s)	263, 1038
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	4 cut(s)	789, 912, 1101, 1448
BstDEI	CTNAG	6 cut(s)	366, 497, 682, 821, 1089, 1388
BstDSI	CCRYGG	1 cut(s)	1010
BstF5I	GGATG	5 cut(s)	110, 211, 750, 847, 1123
BstKTI	GATC	6 cut(s)	36, 280, 523, 714, 799, 1156
BstMAI	GTCTC	3 cut(s)	371, 968, 1123
BstMBI	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 1100
BstNI	CCWGG	4 cut(s)	256, 286, 707, 1254
BstNSI	RCATGY	2 cut(s)	914, 1467
BstSCI	CCNGG	4 cut(s)	254, 284, 705, 1252
BstSFI	CTRYAG	1 cut(s)	1104
BstSLI	GKGCMC	1 cut(s)	893
BstV1I	GCAGC	3 cut(s)	1273, 1290, 1408
BstX2I	RGATCY	3 cut(s)	520, 711, 1153
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	3 cut(s)	520, 711, 1153
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	809, 1302
BtgI	CCRYGG	1 cut(s)	1010
BtgZI	GCGATG	1 cut(s)	1139
BtsCI	GGATG	5 cut(s)	110, 211, 750, 847, 1123
BtsIMutI	CAGTG	2 cut(s)	588, 1400
Cac8I	GCNNGC	4 cut(s)	789, 912, 1101, 1448
CaiI	CAGNNNCTG	2 cut(s)	590, 1402
CciI	TCATGA	1 cut(s)	876
Cfr10I	RCCGGY	1 cut(s)	791
Csp6I	GTAC	3 cut(s)	441, 608, 1377
CviQI	GTAC	3 cut(s)	441, 608, 1377
DdeI	CTNAG	6 cut(s)	366, 497, 682, 821, 1089, 1388
DpnI	GATC	6 cut(s)	35, 279, 522, 713, 798, 1155
DpnII	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
DraI	TTTAAA	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	263, 1038
EarI	CTCTTC	2 cut(s)	263, 1038
Ecl136II	GAGCTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	1010
Eco24I	GRGCYC	1 cut(s)	683
Eco31I	GGTCTC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	681
EcoRII	CCWGG	4 cut(s)	254, 284, 705, 1252
EcoT14I	CCWWGG	1 cut(s)	1010
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	1010
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	1279, 1287, 1397
FokI	GGATG	5 cut(s)	117, 218, 737, 834, 1130
FriOI	GRGCYC	1 cut(s)	683
Fsp4HI	GCNGC	3 cut(s)	1279, 1287, 1397
FspBI	CTAG	4 cut(s)	188, 245, 1002, 1356
GluI	GCNGC	3 cut(s)	1279, 1287, 1397
GsuI	CTGGAG	1 cut(s)	1275
HaeIII	GGCC	2 cut(s)	809, 1302
HapII	CCGG	2 cut(s)	792, 1157
HindIII	AAGCTT	1 cut(s)	1216
HinfI	GANTC	9 cut(s)	11, 50, 173, 812, 948, 976, 1131, 1142, 1320
HpaII	CCGG	2 cut(s)	792, 1157
HphI	GGTGA	3 cut(s)	541, 806, 943
Hpy166II	GTNNAC	2 cut(s)	164, 891
Hpy188I	TCNGA	7 cut(s)	49, 498, 576, 822, 947, 1270, 1336
Hpy188III	TCNNGA	4 cut(s)	54, 877, 1061, 1157
Hpy8I	GTNNAC	2 cut(s)	164, 891
HpyAV	CCTTC	4 cut(s)	470, 511, 799, 1042
HpyCH4IV	ACGT	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 1100
HpyF3I	CTNAG	6 cut(s)	366, 497, 682, 821, 1089, 1388
HpySE526I	ACGT	1 cut(s)	443
Kpn2I	TCCGGA	1 cut(s)	1156
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
LmnI	GCTCC	2 cut(s)	678, 907
Lsp1109I	GCAGC	3 cut(s)	1273, 1290, 1408
LweI	GCATC	5 cut(s)	58, 319, 399, 481, 856
MaeI	CTAG	4 cut(s)	188, 245, 1002, 1356
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	6 cut(s)	260, 334, 479, 813, 1351, 1369
MalI	GATC	6 cut(s)	35, 279, 522, 713, 798, 1155
MboI	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
MboII	GAAGA	6 cut(s)	182, 280, 635, 856, 1034, 1055
MflI	RGATCY	3 cut(s)	520, 711, 1153
MhlI	GDGCHC	2 cut(s)	683, 893
MluCI	AATT	4 cut(s)	153, 182, 626, 1200
MlyI	GAGTC	4 cut(s)	821, 970, 1125, 1151
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	9 cut(s)	88, 492, 598, 1084, 1144, 1145, 1189, 1292, 1410
Mph1103I	ATGCAT	1 cut(s)	676
MroI	TCCGGA	1 cut(s)	1156
MseI	TTAA	4 cut(s)	129, 179, 426, 1112
MslI	CAYNNNNRTG	2 cut(s)	665, 852
MspI	CCGG	2 cut(s)	792, 1157
MspR9I	CCNGG	4 cut(s)	256, 286, 707, 1254
Mva1269I	GAATGC	3 cut(s)	217, 676, 765
MvaI	CCWGG	4 cut(s)	256, 286, 707, 1254
MwoI	GCNNNNNNNGC	2 cut(s)	199, 1100
NcoI	CCATGG	1 cut(s)	1010
NdeII	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
NlaIV	GGNNCC	2 cut(s)	1155, 1179
NmeAIII	GCCGAG	1 cut(s)	835
NmuCI	GTSAC	2 cut(s)	334, 813
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	2 cut(s)	914, 1467
PaeI	GCATGC	1 cut(s)	914
PagI	TCATGA	1 cut(s)	876
PciI	ACATGT	1 cut(s)	1463
PctI	GAATGC	3 cut(s)	217, 676, 765
PfeI	GAWTC	5 cut(s)	11, 50, 173, 948, 1320
Pfl23II	CGTACG	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	1280, 1288, 1398
PleI	GAGTC	4 cut(s)	820, 970, 1125, 1150
PpsI	GAGTC	4 cut(s)	820, 970, 1125, 1150
Ppu21I	YACGTR	1 cut(s)	444
PscI	ACATGT	1 cut(s)	1463
Psp124BI	GAGCTC	1 cut(s)	683
Psp6I	CCWGG	4 cut(s)	254, 284, 705, 1252
PspGI	CCWGG	4 cut(s)	254, 284, 705, 1252
PspLI	CGTACG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	1155, 1179
PstNI	CAGNNNCTG	2 cut(s)	590, 1402
PsuI	RGATCY	3 cut(s)	520, 711, 1153
RsaI	GTAC	3 cut(s)	442, 609, 1378
RsaNI	GTAC	3 cut(s)	441, 608, 1377
RseI	CAYNNNNRTG	2 cut(s)	665, 852
SacI	GAGCTC	1 cut(s)	683
SaqAI	TTAA	4 cut(s)	129, 179, 426, 1112
SatI	GCNGC	3 cut(s)	1279, 1287, 1397
Sau3AI	GATC	6 cut(s)	33, 277, 520, 711, 796, 1153
SchI	GAGTC	4 cut(s)	821, 970, 1125, 1151
ScrFI	CCNGG	4 cut(s)	256, 286, 707, 1254
SduI	GDGCHC	2 cut(s)	683, 893
SfaNI	GCATC	5 cut(s)	58, 319, 399, 481, 856
SfcI	CTRYAG	1 cut(s)	1104
SmiMI	CAYNNNNRTG	2 cut(s)	665, 852
SphI	GCATGC	1 cut(s)	914
Sse9I	AATT	4 cut(s)	153, 182, 626, 1200
SsiI	CCGC	1 cut(s)	734
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	4 cut(s)	188, 245, 1002, 1356
SstI	GAGCTC	1 cut(s)	683
StyD4I	CCNGG	4 cut(s)	254, 284, 705, 1252
StyI	CCWWGG	1 cut(s)	1010
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	3 cut(s)	1077, 1207, 1323
TasI	AATT	4 cut(s)	153, 182, 626, 1200
TfiI	GAWTC	5 cut(s)	11, 50, 173, 948, 1320
Tru1I	TTAA	4 cut(s)	129, 179, 426, 1112
Tru9I	TTAA	4 cut(s)	129, 179, 426, 1112
TscAI	CASTG	2 cut(s)	595, 1407
TseFI	GTSAC	2 cut(s)	334, 813
TseI	GCWGC	3 cut(s)	1278, 1286, 1396
Tsp45I	GTSAC	2 cut(s)	334, 813
TspDTI	ATGAA	9 cut(s)	17, 89, 530, 683, 747, 817, 1022, 1134, 1320
TspRI	CASTG	2 cut(s)	595, 1407
VneI	GTGCAC	1 cut(s)	889
XapI	RAATTY	1 cut(s)	626
XceI	RCATGY	2 cut(s)	914, 1467
XspI	CTAG	4 cut(s)	188, 245, 1002, 1356
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.