MD15G1186400.v1.1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018488
Physical Location & Seq
Reverse (-)
14724128 .. 14725476
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1186400.v1.1.491

Sequence Viewer

Length: 282 bp
ATGCATGCCAGTTTTTCAAATCCAACCTTAATAATGTTCTTGGCTGGTAACAAGGCTGATTTGGAAGATAAGAGAAAAGTAGGGTCTGAGGAAGGTGAGCAATATGCCAAGGAAAATGGTTTGGTTTTCCTTGAAACATCTGCAAAAACTGCACAGAATGTCAATGAGCTCTTCTATGAAATAGCAAAAAAATTGGCCAAAGCTAGCCCTTCTCGTCAATCTGGGATAAAACTGCATAGCAGATCACCTCAAAACAGCAGGAGAATGTTCTGTTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

94

Amino Acids

10.37

Weight (kDa)

9.26

Isoelectric Point (pI)

64.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 66 1.3e-16 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 195
AgsI TTSAA 2 cut(s) 18, 134
AluBI AGCT 2 cut(s) 169, 203
AluI AGCT 2 cut(s) 169, 203
Alw21I GWGCWC 1 cut(s) 171
AoxI GGCC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 107, 237
AsuNHI GCTAGC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BfaI CTAG 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 171
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 242
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 207
BspQI GCTCTTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 6, 205
BstDEI CTNAG 1 cut(s) 87
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 6, 205
CviAII CATG 1 cut(s) 5
CviJI RGCY 6 cut(s) 44, 56, 169, 197, 203, 207
CviKI_1 RGCY 6 cut(s) 44, 56, 169, 197, 203, 207
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 8
FaiI YATR 4 cut(s) 6, 105, 177, 237
FatI CATG 1 cut(s) 4
FriOI GRGCYC 1 cut(s) 171
FspBI CTAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 1 cut(s) 8
HphI GGTGA 2 cut(s) 107, 237
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 86, 219
HpyCH4V TGCA 4 cut(s) 4, 143, 152, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 1 cut(s) 242
LguI GCTCTTC 1 cut(s) 176
LpnPI CCDG 4 cut(s) 22, 30, 207, 244
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 2 cut(s) 77, 163
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 2 cut(s) 82, 258
Mox20I TGGCCA 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 1 cut(s) 242
NheI GCTAGC 1 cut(s) 203
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 171
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 171
SetI ASST 5 cut(s) 29, 97, 171, 205, 250
SphI GCATGC 1 cut(s) 8
Sse9I AATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 171
StyI CCWWGG 1 cut(s) 108
TasI AATT 1 cut(s) 191
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 192
XceI RCATGY 1 cut(s) 8
XspI CTAG 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.