Rh6AG000600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018488
Physical Location & Seq
Forward (+)
192349 .. 195065
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG000600.1

Sequence Viewer

Length: 501 bp
ATGTTCAAATTTTCTTTTCGAAGGTACGATTCGTCTTTGAAATCGGTGAAGGAGCTTAACCAACCCCCTGGATTCGAATTGCGGGGTGTTCGTGAATCGAAGAAGGAGATGATAGGTGGAAGGATGGGTTCCTACTATAAGGAGCATAGAATTCTTCCCCACTTCCAGAACTCAGCTTGCTGTATATCTATTCAATATAACTTTGCAATGAGGCTTGGTGGCTTACGGGATAAGGATGGTTTTATGTTATCTACTTTCAACTCCATCAGCTTTTTGTTTGAAGCTAAGGCATTATCAACAAAGGCTGGGGTTGGTAATTCAGTACAATCAAATGATTCTGTGTACTTAGTGGACAATTGCCCCCATGATGACTCTTCCTCGGATGCTCTGTTGTGGTCAGGAACGTTACCATCGCCTGGCTCCCATGTATTACCGCGGTGCAACTGCAGCTGTTGGTCTATGATATCACAAGCATGGAGTCATTTGTTTTTAGCGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.59

Weight (kDa)

8.77

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 1 cut(s) 436
AciI CCGC 3 cut(s) 82, 434, 436
AclI AACGTT 1 cut(s) 404
AcsI RAATTY 2 cut(s) 8, 150
AfaI GTAC 3 cut(s) 26, 324, 344
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 5 cut(s) 7, 40, 194, 259, 281
AjnI CCWGG 2 cut(s) 67, 415
AluBI AGCT 6 cut(s) 55, 176, 270, 284, 450, 498
AluI AGCT 6 cut(s) 55, 176, 270, 284, 450, 498
ApeKI GCWGC 1 cut(s) 447
ApoI RAATTY 2 cut(s) 8, 150
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 2 cut(s) 19, 75
BbvI GCAGC 1 cut(s) 459
BccI CCATC 4 cut(s) 118, 230, 272, 418
BciT130I CCWGG 2 cut(s) 69, 417
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 69, 417
BmiI GGNNCC 2 cut(s) 130, 421
BmrFI CCNGG 2 cut(s) 69, 417
BmsI GCATC 1 cut(s) 373
Bpu10I CCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 2 cut(s) 19, 75
BsaJI CCNNGG 3 cut(s) 67, 378, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 69, 417
BseDI CCNNGG 3 cut(s) 67, 378, 434
BseGI GGATG 3 cut(s) 129, 241, 388
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 416
Bsp119I TTCGAA 2 cut(s) 19, 75
BspACI CCGC 3 cut(s) 82, 434, 436
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 130, 421
BspMAI CTGCAG 1 cut(s) 449
BspT104I TTCGAA 2 cut(s) 19, 75
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 3 cut(s) 67, 378, 434
Bst2UI CCWGG 2 cut(s) 69, 417
Bst6I CTCTTC 1 cut(s) 379
BstBI TTCGAA 2 cut(s) 19, 75
BstC8I GCNNGC 2 cut(s) 178, 496
BstDEI CTNAG 3 cut(s) 172, 285, 346
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 3 cut(s) 129, 241, 388
BstFNI CGCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 447
BstNI CCWGG 2 cut(s) 69, 417
BstSCI CCNGG 2 cut(s) 67, 415
BstSFI CTRYAG 1 cut(s) 445
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 396
BtsCI GGATG 3 cut(s) 129, 241, 388
Cac8I GCNNGC 2 cut(s) 178, 496
Cfr42I CCGCGG 1 cut(s) 437
Csp6I GTAC 3 cut(s) 25, 323, 343
CviAII CATG 3 cut(s) 365, 425, 474
CviQI GTAC 3 cut(s) 25, 323, 343
DdeI CTNAG 3 cut(s) 172, 285, 346
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco32I GATATC 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 150
EcoRII CCWGG 2 cut(s) 67, 415
EcoRV GATATC 1 cut(s) 465
FaeI CATG 3 cut(s) 368, 428, 477
FaiI YATR 9 cut(s) 138, 147, 185, 198, 245, 366, 426, 461, 475
FatI CATG 3 cut(s) 364, 424, 473
FauI CCCGC 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 3 cut(s) 136, 248, 395
Fsp4HI GCNGC 1 cut(s) 448
GluI GCNGC 1 cut(s) 448
GsaI CCCAGC 1 cut(s) 309
Hin1II CATG 3 cut(s) 368, 428, 477
HinfI GANTC 6 cut(s) 29, 72, 95, 335, 371, 478
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 343, 352
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 3 cut(s) 92, 166, 399
Hpy8I GTNNAC 2 cut(s) 343, 352
HpyAV CCTTC 4 cut(s) 15, 43, 97, 114
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 3 cut(s) 206, 441, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 447
HpyF3I CTNAG 3 cut(s) 172, 285, 346
HpySE526I ACGT 1 cut(s) 404
Hsp92II CATG 3 cut(s) 368, 428, 477
KspI CCGCGG 1 cut(s) 437
LmnI GCTCC 3 cut(s) 52, 142, 425
LpnPI CCDG 7 cut(s) 54, 81, 179, 291, 384, 402, 429
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 373
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 405
MboII GAAGA 3 cut(s) 112, 146, 366
MfeI CAATTG 1 cut(s) 355
MluCI AATT 5 cut(s) 8, 77, 150, 316, 355
MlyI GAGTC 2 cut(s) 365, 487
MnlI CCTC 2 cut(s) 204, 388
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 472
MspA1I CMGCKG 2 cut(s) 436, 450
MspR9I CCNGG 2 cut(s) 69, 417
MunI CAATTG 1 cut(s) 355
MvaI CCWGG 2 cut(s) 69, 417
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 447
NlaIII CATG 3 cut(s) 368, 428, 477
NlaIV GGNNCC 2 cut(s) 130, 421
NspV TTCGAA 2 cut(s) 19, 75
PfeI GAWTC 4 cut(s) 29, 72, 95, 335
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 1 cut(s) 449
PleI GAGTC 2 cut(s) 365, 486
PpsI GAGTC 2 cut(s) 365, 486
Psp1406I AACGTT 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 67, 415
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 67, 415
PspN4I GGNNCC 2 cut(s) 130, 421
PstI CTGCAG 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 450
RsaI GTAC 3 cut(s) 26, 324, 344
RsaNI GTAC 3 cut(s) 25, 323, 343
RseI CAYNNNNRTG 1 cut(s) 472
SacII CCGCGG 1 cut(s) 437
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 448
SchI GAGTC 2 cut(s) 365, 487
ScrFI CCNGG 2 cut(s) 69, 417
SetI ASST 9 cut(s) 26, 57, 118, 178, 272, 286, 407, 452, 500
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 445
Sfr303I CCGCGG 1 cut(s) 437
SfuI TTCGAA 2 cut(s) 19, 75
SgrBI CCGCGG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 472
Sse9I AATT 5 cut(s) 8, 77, 150, 316, 355
SsiI CCGC 3 cut(s) 82, 434, 436
StyD4I CCNGG 2 cut(s) 67, 415
TaiI ACGT 1 cut(s) 407
TaqI TCGA 3 cut(s) 19, 75, 98
TasI AATT 5 cut(s) 8, 77, 150, 316, 355
TatI WGTACW 2 cut(s) 322, 342
TfiI GAWTC 4 cut(s) 29, 72, 95, 335
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 1 cut(s) 447
Van91I CCANNNNNTGG 1 cut(s) 416
XapI RAATTY 2 cut(s) 8, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.