Rroxscaffold_7G00177940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018488
Physical Location & Seq
Forward (+)
17527693 .. 17539397
11705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177940.1

Sequence Viewer

Length: 216 bp
ATGCCCAATTGCGACGTGGCCAATCTCGACATGGTGGATCGATGTCGGTGGGCTGTGTACGATTCGTCTGCGAAATCGGTGAAGGAGCTTAACCAACCCCTTGGATTCGAATTGCGGGGTGTTCGTGAAGCGGAGAAGGAGATGATAGGTCGGGAACGTTACCATGGCCCGGCTCCCATGTATTACCGCGGTGCAGCTGCAGCTGTTGGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.96

Weight (kDa)

6.55

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 4 cut(s) 115, 131, 187, 189
AclI AACGTT 1 cut(s) 157
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 18
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 169
AjiI CACGTC 1 cut(s) 16
AluBI AGCT 3 cut(s) 88, 197, 203
AluI AGCT 3 cut(s) 88, 197, 203
AlwI GGATC 1 cut(s) 45
AoxI GGCC 2 cut(s) 18, 166
ApeKI GCWGC 3 cut(s) 194, 197, 200
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 108
BalI TGGCCA 1 cut(s) 20
BbvI GCAGC 3 cut(s) 184, 206, 212
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BcnI CCSGG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 3 cut(s) 195, 198, 201
BlsI GCNGC 3 cut(s) 196, 199, 202
Bme1390I CCNGG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 100, 163, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 40
BseDI CCNNGG 3 cut(s) 100, 163, 187
BseLI CCNNNNNNNGG 1 cut(s) 169
BseXI GCAGC 3 cut(s) 184, 206, 212
BsgI GTGCAG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 2 cut(s) 20, 168
BshVI ATCGAT 1 cut(s) 40
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 2 cut(s) 20, 168
Bsp119I TTCGAA 1 cut(s) 108
Bsp143I GATC 1 cut(s) 37
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 4 cut(s) 115, 131, 187, 189
BspANI GGCC 2 cut(s) 20, 168
BspDI ATCGAT 1 cut(s) 40
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 108
BssECI CCNNGG 3 cut(s) 100, 163, 187
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 100, 163
BstBI TTCGAA 1 cut(s) 108
BstDSI CCRYGG 2 cut(s) 163, 187
BstFNI CGCG 1 cut(s) 189
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 184, 206, 212
BstXI CCANNNNNNTGG 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 40
BsuRI GGCC 2 cut(s) 20, 168
BsuTUI ATCGAT 1 cut(s) 40
BtgI CCRYGG 2 cut(s) 163, 187
BtrI CACGTC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 167
Cfr42I CCGCGG 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 40
Csp6I GTAC 1 cut(s) 58
CviAII CATG 3 cut(s) 31, 164, 178
CviJI RGCY 7 cut(s) 20, 53, 88, 168, 173, 197, 203
CviKI_1 RGCY 7 cut(s) 20, 53, 88, 168, 173, 197, 203
CviQI GTAC 1 cut(s) 58
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 100, 163
EcoT14I CCWWGG 2 cut(s) 100, 163
ErhI CCWWGG 2 cut(s) 100, 163
FaeI CATG 3 cut(s) 34, 167, 181
FaiI YATR 4 cut(s) 32, 165, 179, 214
FatI CATG 3 cut(s) 30, 163, 177
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 195, 198, 201
Fsp4HI GCNGC 3 cut(s) 195, 198, 201
GluI GCNGC 3 cut(s) 195, 198, 201
HaeIII GGCC 2 cut(s) 20, 168
HapII CCGG 1 cut(s) 170
Hin1II CATG 3 cut(s) 34, 167, 181
HinfI GANTC 2 cut(s) 62, 105
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 3 cut(s) 26, 125, 152
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 76, 130
HpyCH4IV ACGT 2 cut(s) 15, 157
HpyCH4V TGCA 2 cut(s) 194, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 2 cut(s) 15, 157
Hsp92II CATG 3 cut(s) 34, 167, 181
KspI CCGCGG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 85, 178
LpnPI CCDG 1 cut(s) 183
Lsp1109I GCAGC 3 cut(s) 184, 206, 212
MaeII ACGT 2 cut(s) 15, 157
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MfeI CAATTG 1 cut(s) 7
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 2 cut(s) 7, 110
MluNI TGGCCA 1 cut(s) 20
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 189, 197, 203
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 7
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 170
NcoI CCATGG 1 cut(s) 163
NdeII GATC 1 cut(s) 37
NlaIII CATG 3 cut(s) 34, 167, 181
NlaIV GGNNCC 1 cut(s) 174
NspV TTCGAA 1 cut(s) 108
PfeI GAWTC 2 cut(s) 62, 105
PkrI GCNGC 3 cut(s) 196, 199, 202
Psp1406I AACGTT 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 202
PvuII CAGCTG 2 cut(s) 197, 203
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacII CCGCGG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 195, 198, 201
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 170
SetI ASST 6 cut(s) 18, 90, 151, 160, 199, 205
SfcI CTRYAG 1 cut(s) 198
Sfr303I CCGCGG 1 cut(s) 190
SfuI TTCGAA 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 190
Sse9I AATT 2 cut(s) 7, 110
SsiI CCGC 4 cut(s) 115, 131, 187, 189
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 2 cut(s) 100, 163
TaiI ACGT 2 cut(s) 18, 160
TaqI TCGA 3 cut(s) 27, 40, 108
TasI AATT 2 cut(s) 7, 110
TfiI GAWTC 2 cut(s) 62, 105
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 3 cut(s) 194, 197, 200
XcmI CCANNNNNNNNNTGG 2 cut(s) 13, 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.