Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018488

Physical Location & Seq

Genomic Coordinates Reverse (-)

21440115 .. 21451701

Gene Structure 11587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTCAAATTTTCTTTTCGAAGGTACGATTCATCTTTGAAATCGGTGAAGGAGCTTAACCAACCCCCTGGATTCGAATTGCGGGGTGTTCGTGAATCGAAGAAGGAGATGATAGGTGGAAGGATGGGTTCCTACTATAAGGAGCATAGAATTCTTCCCCACTTCCAGAACTCAGCTTGCTGTATATCTATTCAATATAACTTTGCAATGAGGCTTGGTGGCTTATGGGATAAGGATGGTTTTATGTTATCTACTTTCAACTCCATCAGCTTTTTGTTTGAAACTAAGGCATTATCAACAAAGGCTGGGGTTGGTAATTCAGTACAATCAAATGATTCTGTGTACTTAGTGGACAATTGCCCCCATGATGACTCTTCCTCGGATGCTCTGTTGTGGTCAGGAACGTTACCATCGCCTGGCTCCCATGTATTACCGCGGTGCAACTGCAGCTGTTGGTCTATGATATCACAAGCATGGAGTCATTTACAAGCAAATCCAACTTTAATAATGTTCTTGATTGGAAACAAGGCCGAGTTGGAAGAGAAGAGAAAAGTAGGGACTGAGGAAAAAGCGCTGGAACAACTCAAGGTAACAGAAAGCAAGACAGTTGCAGTAAGGCAAAAGATGGACTTGGTGTTCTATACGCTGCAGCTTGGTTTCTTTTACATGGATTTTGACCTCATTTCTAAGAGCATTGAGAAAGCGAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

237

Amino Acids

26.89

Weight (kDa)

8.81

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	184 - 236	8.5e-09	26S proteasome subunit RPN7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018488)

Species	Orthologous Gene IDs
malus_domestica	MD15G1186400.v1.1
rosa_chinensis	RchiOBHm_Chr4g0388181 RchiOBHm_Chr7g0239551
rosa_roxburghii	Rroxscaffold_1G00030440 Rroxscaffold_1G00035910 Rroxscaffold_7G00177940
rosa_samantha	Rh6AG000600 Rh6AG139200 Rh6AG192800 Rh6AG192900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	1 cut(s)	436
AciI	CCGC	3 cut(s)	82, 434, 436
AclI	AACGTT	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	8, 150
AfaI	GTAC	3 cut(s)	26, 324, 344
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	5 cut(s)	7, 40, 194, 259, 281
AjnI	CCWGG	2 cut(s)	67, 415
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	55, 176, 270, 450, 652
AluI	AGCT	5 cut(s)	55, 176, 270, 450, 652
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	447, 646, 649
ApoI	RAATTY	2 cut(s)	8, 150
AspLEI	GCGC	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	2 cut(s)	19, 75
BbvI	GCAGC	3 cut(s)	459, 633, 661
BccI	CCATC	5 cut(s)	118, 230, 272, 418, 619
BciT130I	CCWGG	2 cut(s)	69, 417
BfmI	CTRYAG	2 cut(s)	445, 647
BfoI	RGCGCY	1 cut(s)	575
BisI	GCNGC	3 cut(s)	448, 647, 650
BlsI	GCNGC	3 cut(s)	449, 648, 651
Bme1390I	CCNGG	2 cut(s)	69, 417
BmiI	GGNNCC	2 cut(s)	130, 421
BmrFI	CCNGG	2 cut(s)	69, 417
BmsI	GCATC	1 cut(s)	373
Bpu14I	TTCGAA	2 cut(s)	19, 75
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	67, 378, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	69, 417
BseDI	CCNNGG	3 cut(s)	67, 378, 434
BseGI	GGATG	3 cut(s)	129, 241, 388
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	186, 552
BseXI	GCAGC	3 cut(s)	459, 633, 661
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	530
Bsp119I	TTCGAA	2 cut(s)	19, 75
BspACI	CCGC	3 cut(s)	82, 434, 436
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	2 cut(s)	185, 553
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	130, 421
BspMAI	CTGCAG	2 cut(s)	449, 651
BspT104I	TTCGAA	2 cut(s)	19, 75
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	3 cut(s)	67, 378, 434
Bst2UI	CCWGG	2 cut(s)	69, 417
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	3 cut(s)	379, 534, 539
BstBI	TTCGAA	2 cut(s)	19, 75
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	5 cut(s)	172, 285, 346, 561, 687
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	3 cut(s)	129, 241, 388
BstFNI	CGCG	1 cut(s)	436
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstNI	CCWGG	2 cut(s)	69, 417
BstSCI	CCNGG	2 cut(s)	67, 415
BstSFI	CTRYAG	2 cut(s)	445, 647
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	459, 633, 661
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	434
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	129, 241, 388
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	1 cut(s)	574
Cfr42I	CCGCGG	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	25, 323, 343
CviAII	CATG	4 cut(s)	365, 425, 474, 667
CviQI	GTAC	3 cut(s)	25, 323, 343
DdeI	CTNAG	5 cut(s)	172, 285, 346, 561, 687
Eam1104I	CTCTTC	3 cut(s)	379, 534, 539
EarI	CTCTTC	3 cut(s)	379, 534, 539
Eco32I	GATATC	1 cut(s)	465
Eco47III	AGCGCT	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	67, 415
EcoRV	GATATC	1 cut(s)	465
FaeI	CATG	4 cut(s)	368, 428, 477, 670
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	4 cut(s)	364, 424, 473, 666
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	448, 647, 650
FokI	GGATG	3 cut(s)	136, 248, 395
Fsp4HI	GCNGC	3 cut(s)	448, 647, 650
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	3 cut(s)	448, 647, 650
GsaI	CCCAGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	530
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	4 cut(s)	368, 428, 477, 670
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	6 cut(s)	29, 72, 95, 335, 371, 478
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	343, 352
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	4 cut(s)	92, 166, 399, 514
Hpy8I	GTNNAC	2 cut(s)	343, 352
HpyAV	CCTTC	4 cut(s)	15, 43, 97, 114
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	5 cut(s)	206, 441, 447, 611, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpyF3I	CTNAG	5 cut(s)	172, 285, 346, 561, 687
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	4 cut(s)	368, 428, 477, 670
HspAI	GCGC	1 cut(s)	572
KspI	CCGCGG	1 cut(s)	437
LmnI	GCTCC	3 cut(s)	52, 142, 425
LpnPI	CCDG	8 cut(s)	54, 81, 179, 291, 384, 402, 429, 560
Lsp1109I	GCAGC	3 cut(s)	459, 633, 661
LweI	GCATC	1 cut(s)	373
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	2 cut(s)	405, 589
MboII	GAAGA	5 cut(s)	112, 146, 366, 551, 556
MfeI	CAATTG	1 cut(s)	355
MluCI	AATT	5 cut(s)	8, 77, 150, 316, 355
MlyI	GAGTC	2 cut(s)	365, 487
MmeI	TCCRAC	2 cut(s)	516, 521
MnlI	CCTC	4 cut(s)	204, 388, 556, 689
MseI	TTAA	2 cut(s)	57, 503
MslI	CAYNNNNRTG	1 cut(s)	472
MspA1I	CMGCKG	2 cut(s)	436, 450
MspR9I	CCNGG	2 cut(s)	69, 417
MunI	CAATTG	1 cut(s)	355
MvaI	CCWGG	2 cut(s)	69, 417
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	447
NlaIII	CATG	4 cut(s)	368, 428, 477, 670
NlaIV	GGNNCC	2 cut(s)	130, 421
NmeAIII	GCCGAG	1 cut(s)	556
NspV	TTCGAA	2 cut(s)	19, 75
PfeI	GAWTC	4 cut(s)	29, 72, 95, 335
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	449, 648, 651
PleI	GAGTC	2 cut(s)	365, 486
PpsI	GAGTC	2 cut(s)	365, 486
Psp1406I	AACGTT	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	67, 415
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	67, 415
PspN4I	GGNNCC	2 cut(s)	130, 421
PstI	CTGCAG	2 cut(s)	449, 651
PvuII	CAGCTG	1 cut(s)	450
RsaI	GTAC	3 cut(s)	26, 324, 344
RsaNI	GTAC	3 cut(s)	25, 323, 343
RseI	CAYNNNNRTG	1 cut(s)	472
SacII	CCGCGG	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	57, 503
SatI	GCNGC	3 cut(s)	448, 647, 650
SchI	GAGTC	2 cut(s)	365, 487
ScrFI	CCNGG	2 cut(s)	69, 417
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	2 cut(s)	445, 647
Sfr303I	CCGCGG	1 cut(s)	437
SfuI	TTCGAA	2 cut(s)	19, 75
SgrBI	CCGCGG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	8, 77, 150, 316, 355
SsiI	CCGC	3 cut(s)	82, 434, 436
StyD4I	CCNGG	2 cut(s)	67, 415
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	3 cut(s)	19, 75, 98
TasI	AATT	5 cut(s)	8, 77, 150, 316, 355
TatI	WGTACW	2 cut(s)	322, 342
TfiI	GAWTC	4 cut(s)	29, 72, 95, 335
Tru1I	TTAA	2 cut(s)	57, 503
Tru9I	TTAA	2 cut(s)	57, 503
TseI	GCWGC	3 cut(s)	447, 646, 649
TspDTI	ATGAA	1 cut(s)	21
Van91I	CCANNNNNTGG	1 cut(s)	416
XapI	RAATTY	2 cut(s)	8, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.