Rroxscaffold_1G00030440

Sterol 3-beta-glucosyltransferase UGT80A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018488
Physical Location & Seq
Reverse (-)
40040205 .. 40075809
35605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030440.1

Sequence Viewer

Length: 813 bp
ATGCTGCTCTTCCTTCACCGGCCGATATCTCTCTCATCTGACCTCGAATCGAGAATTTTGAGGGTGATGAAAGAAAAGGCTCGAGGTAGGCTCAAAGTGGTTAAACTACGGGGTGCACAACATTCAATACAAGTCCATATTAACCAAGTCAATACTACGGGGAAGGATCCGGGGTGGCTTCGATCCGTACTTGGAGGCGGCGGCGGAGCAAGGAAGCACCGCAGGGAGGCTCGGCGTGGGGCGGCGATCTCGGGGAAGGCCGGGGGTCCGGGCCGGAGGAGGCCGGAAGGATGTCATGAATCGAAATCAAATCAAACTCCACATCACATAGTAATTCACTTGAACCACTCAAACTCCACATCACATATGTGCCTTGTATCACCTCTTCAAGAACCAGAGAAGATGACCAATATTATTCTTCAAGCTCTAAAAATTACTGGACAAAGAGGCATTATCAACAAAGGTGGGGTTGGTAATTGTAAGTCTTGGTTCTCAAGATTACTTTCGAGCATAGTGTATATGTATGCTTATCTGCATATGAAACAATTTATTTTTATCTTCCCAGCAGTACAATCAAATGATTCTGTGTACTTAGTGGACAATTGCCCCCATGATGACTCTTCCTCGGATGCTCGTTGTGCAAATCCAACTTTAATAATGTTCTTGGCTAGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGGGACTGAGAAGGAGTTGGTAAATTCGGATATGAATCAAAGAGAGAAGACTCTAACGGCAGAGTTGTCGTCGATTGTTAAGAAAAATCCAAATCTTTACTCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_28 UDPGT

Protein Analysis

270

Amino Acids

30.18

Weight (kDa)

10.11

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 198, 201, 204, 220, 242
AclWI GGATC 3 cut(s) 161, 174, 177
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 2 cut(s) 54, 727
AfaI GTAC 3 cut(s) 189, 570, 590
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 4 cut(s) 126, 343, 389, 422
AleI CACNNNNGTG 1 cut(s) 367
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw21I GWGCWC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 3 cut(s) 161, 174, 177
Ama87I CYCGRG 2 cut(s) 81, 250
AoxI GGCC 4 cut(s) 20, 258, 271, 281
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 54, 727
AspS9I GGNCC 2 cut(s) 266, 271
AsuC2I CCSGG 3 cut(s) 171, 262, 270
AsuHPI GGTGA 3 cut(s) 8, 76, 372
AvaI CYCGRG 2 cut(s) 81, 250
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BbsI GAAGAC 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 777
BcgI CGANNNNNNTGC 2 cut(s) 753, 787
BcnI CCSGG 3 cut(s) 171, 262, 270
BfaI CTAG 1 cut(s) 669
BisI GCNGC 4 cut(s) 5, 199, 202, 243
BlsI GCNGC 4 cut(s) 6, 200, 203, 244
Bme1390I CCNGG 3 cut(s) 171, 262, 270
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 2 cut(s) 81, 250
BmgT120I GGNCC 2 cut(s) 266, 271
BmiI GGNNCC 2 cut(s) 168, 267
BmrFI CCNGG 3 cut(s) 171, 262, 270
BmsI GCATC 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 758
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpmI CTGGAG 1 cut(s) 790
BpuEI CTTGAG 1 cut(s) 478
BpuMI CCSGG 3 cut(s) 171, 262, 270
BsaBI GATNNNNATC 1 cut(s) 738
BsaJI CCNNGG 3 cut(s) 170, 261, 624
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 738
BseDI CCNNGG 3 cut(s) 170, 261, 624
BseGI GGATG 2 cut(s) 296, 634
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 118
BseX3I CGGCCG 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 562
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 4 cut(s) 22, 260, 273, 283
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 2 cut(s) 81, 250
BsiSI CCGG 6 cut(s) 19, 170, 261, 269, 274, 284
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 4 cut(s) 22, 260, 273, 283
BsoBI CYCGRG 2 cut(s) 81, 250
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 3 cut(s) 166, 182, 246
BspACI CCGC 5 cut(s) 198, 201, 204, 220, 242
BspANI GGCC 4 cut(s) 22, 260, 273, 283
BspCNI CTCAG 1 cut(s) 703
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 168, 267
BspPI GGATC 3 cut(s) 161, 174, 177
BspQI GCTCTTC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 18
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 170, 261, 624
BssMI GATC 3 cut(s) 166, 182, 246
Bst6I CTCTTC 5 cut(s) 14, 390, 625, 684, 689
BstDEI CTNAG 2 cut(s) 592, 711
BstF5I GGATG 2 cut(s) 296, 634
BstKTI GATC 3 cut(s) 169, 185, 249
BstMBI GATC 3 cut(s) 166, 182, 246
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstSCI CCNGG 3 cut(s) 169, 260, 268
BstSLI GKGCMC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 758
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 20
BsuRI GGCC 4 cut(s) 22, 260, 273, 283
BtsCI GGATG 2 cut(s) 296, 634
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 266, 271
Csp6I GTAC 3 cut(s) 188, 569, 589
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 2 cut(s) 296, 611
CviQI GTAC 3 cut(s) 188, 569, 589
DdeI CTNAG 2 cut(s) 592, 711
DpnI GATC 3 cut(s) 168, 184, 248
DpnII GATC 3 cut(s) 166, 182, 246
EaeI YGGCCR 1 cut(s) 20
EagI CGGCCG 1 cut(s) 20
Eam1104I CTCTTC 5 cut(s) 14, 390, 625, 684, 689
EarI CTCTTC 5 cut(s) 14, 390, 625, 684, 689
EciI GGCGGA 1 cut(s) 219
EclXI CGGCCG 1 cut(s) 20
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 266
Eco52I CGGCCG 1 cut(s) 20
Eco88I CYCGRG 2 cut(s) 81, 250
EcoRV GATATC 1 cut(s) 27
FaeI CATG 2 cut(s) 299, 614
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 1 cut(s) 721
FatI CATG 2 cut(s) 295, 610
FauNDI CATATG 2 cut(s) 366, 537
Fnu4HI GCNGC 4 cut(s) 5, 199, 202, 243
FokI GGATG 2 cut(s) 303, 641
Fsp4HI GCNGC 4 cut(s) 5, 199, 202, 243
FspBI CTAG 1 cut(s) 669
GluI GCNGC 4 cut(s) 5, 199, 202, 243
GsaI CCCAGC 1 cut(s) 566
GsuI CTGGAG 1 cut(s) 790
HaeIII GGCC 4 cut(s) 22, 260, 273, 283
HapII CCGG 6 cut(s) 19, 170, 261, 269, 274, 284
Hin1II CATG 2 cut(s) 299, 614
HinfI GANTC 6 cut(s) 47, 299, 581, 617, 739, 754
HpaII CCGG 6 cut(s) 19, 170, 261, 269, 274, 284
HphI GGTGA 3 cut(s) 8, 76, 372
Hpy166II GTNNAC 3 cut(s) 116, 589, 598
Hpy188I TCNGA 3 cut(s) 40, 628, 733
Hpy188III TCNNGA 5 cut(s) 51, 296, 389, 495, 807
Hpy8I GTNNAC 3 cut(s) 116, 589, 598
Hpy99I CGWCG 1 cut(s) 778
HpyAV CCTTC 5 cut(s) 23, 157, 250, 281, 709
HpyCH4V TGCA 3 cut(s) 116, 535, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 2 cut(s) 592, 711
Hsp92II CATG 2 cut(s) 299, 614
Kzo9I GATC 3 cut(s) 166, 182, 246
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 206
LweI GCATC 1 cut(s) 619
MaeI CTAG 1 cut(s) 669
MalI GATC 3 cut(s) 168, 184, 248
MboI GATC 3 cut(s) 166, 182, 246
MboII GAAGA 8 cut(s) 377, 410, 412, 550, 612, 701, 706, 763
MfeI CAATTG 1 cut(s) 601
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 7 cut(s) 54, 333, 432, 475, 545, 601, 727
MlyI GAGTC 2 cut(s) 611, 748
MmeI TCCRAC 1 cut(s) 671
MseI TTAA 4 cut(s) 102, 141, 653, 783
MslI CAYNNNNRTG 1 cut(s) 367
MspI CCGG 6 cut(s) 19, 170, 261, 269, 274, 284
MspR9I CCNGG 3 cut(s) 171, 262, 270
MunI CAATTG 1 cut(s) 601
MwoI GCNNNNNNNGC 1 cut(s) 638
NciI CCSGG 3 cut(s) 171, 262, 270
NdeI CATATG 2 cut(s) 366, 537
NdeII GATC 3 cut(s) 166, 182, 246
NlaIII CATG 2 cut(s) 299, 614
NlaIV GGNNCC 2 cut(s) 168, 267
NmeAIII GCCGAG 1 cut(s) 211
OliI CACNNNNGTG 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 81
PagI TCATGA 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 14
PfeI GAWTC 4 cut(s) 47, 299, 581, 739
PkrI GCNGC 4 cut(s) 6, 200, 203, 244
PleI GAGTC 2 cut(s) 611, 748
PpsI GAGTC 2 cut(s) 611, 748
PspFI CCCAGC 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 168, 267
PspPI GGNCC 2 cut(s) 266, 271
PspXI VCTCGAGB 1 cut(s) 81
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 3 cut(s) 189, 570, 590
RsaNI GTAC 3 cut(s) 188, 569, 589
RseI CAYNNNNRTG 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 4 cut(s) 102, 141, 653, 783
SatI GCNGC 4 cut(s) 5, 199, 202, 243
Sau3AI GATC 3 cut(s) 166, 182, 246
Sau96I GGNCC 2 cut(s) 266, 271
SchI GAGTC 2 cut(s) 611, 748
ScrFI CCNGG 3 cut(s) 171, 262, 270
SduI GDGCHC 1 cut(s) 118
SetI ASST 5 cut(s) 45, 88, 385, 427, 466
SfaNI GCATC 1 cut(s) 619
Sfr274I CTCGAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 367
SmlI CTYRAG 2 cut(s) 81, 493
SmoI CTYRAG 2 cut(s) 81, 493
Sse9I AATT 7 cut(s) 54, 333, 432, 475, 545, 601, 727
SsiI CCGC 5 cut(s) 198, 201, 204, 220, 242
SspI AATATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 3 cut(s) 169, 260, 268
TaqI TCGA 7 cut(s) 45, 50, 82, 181, 302, 506, 776
TasI AATT 7 cut(s) 54, 333, 432, 475, 545, 601, 727
TatI WGTACW 2 cut(s) 568, 588
TauI GCSGC 3 cut(s) 201, 204, 245
TfiI GAWTC 4 cut(s) 47, 299, 581, 739
Tru1I TTAA 4 cut(s) 102, 141, 653, 783
Tru9I TTAA 4 cut(s) 102, 141, 653, 783
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 83, 312, 554, 752
TspGWI ACGGA 1 cut(s) 175
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 2 cut(s) 54, 727
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.