Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013554

Physical Location & Seq

Genomic Coordinates Reverse (-)

26706792 .. 26708183

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1288800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAATCCCTGCTCCCTCGTCCAATCCCAATCAGATTCACTAACAACCACCGCGACTCCCTCCTACTGAGTCATCTCCCCACCACAACTCGACTCAACTCGCCCTCCCCAAAACCCATCTTCCACCACCCCCTCCTCCTCCCTTCTTTTTTCCGCTTCAAACCCAAACCCCTCCCTCCTTCTCCTCCTCCTCCTCTCCGCAATTCCACCGCTCTCCGATGCACCGCCAGGACATGCGATCATGATCACGATCACCACCACCCCCATAACCACGACCATCGCCACGACCACCATCACCACCACGACTATGGGGAGCTCACCGGAACTCAGAAACAGTTGGTCCGATTCGCCAAGGCCGTGCGATGGACCGACCTCGCCGATTTCCTCAGGGAGCACTTGCAATTGTGCTTCTGCTCCGCTTCTCTGCTTCTCGCCGCCGCCGTTTGCCCTTATGTGATGCTCAAGCTGGCCGTGAAGCCTATGCAGAATGCTTTTATACTCGTTGCATTCCCTCTAGTCTCCGCGGCACTCGACGCTCTTACTGATTTAAGTGGCGGGAAGGTAAACATTCATGTATTGACGGCTTTAGCAGCATTTGCATCTGTGTTTATGGGGAATGCGTTGGAAGGAGGGTTACTTTTGGCCATGTTCAATCTTGCCCATATAGCTGAGGAGTATTTCACAAGTCGGTCTATGATTGACGTCAAAGATTTGAAGGAAAATCATCCGGATTTCGCCCTTGTGCTGGATATCAATGACGGACAACTTCCTAATACGTCTGATTTGGCAAACAAGCAGGTTCCCGTGCACAACCTACAAGTGGGGTCATACATTTTGGTCGGAGCTGGTGAGGTCATACCCAGTGCACAAGGCTCCCGCTTTACGCAGGGTCTGGGAGAGGTGAATGTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006878 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015633 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase Hydrolase

Protein Analysis

305

Amino Acids

33.62

Weight (kDa)

7.1

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37270
fragaria_vesca	FvH4_1g16780 FvH4_1g16780 FvH4_1g16780
malus_domestica	MD02G1179100.v1.1 MD15G1288800.v1.1
prunus_persica	Prupe.6G228900_v2.0.a1
pyrus_communis	pycom02g14510
rosa_chinensis	RchiOBHm_Chr2g0106681
rosa_laevigata	RLG00000017530
rosa_multiflora	Rmu_sc0004000.1_g000005
rosa_roxburghii	Rroxscaffold_2G00136890
rosa_rugosa	Rorug02G0137700
rosa_samantha	Rh2AG188700 Rh2BG199900 Rh2CG193800 Rh2DG195000
rosa_wichuraiana	Rw2G014840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	705
Acc36I	ACCTGC	1 cut(s)	787
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	2 cut(s)	54, 524
AccIII	TCCGGA	1 cut(s)	727
AcoI	YGGCCR	2 cut(s)	468, 642
AcyI	GRCGYC	1 cut(s)	702
AfiI	CCNNNNNNNGG	3 cut(s)	363, 745, 820
AgsI	TTSAA	3 cut(s)	160, 652, 715
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	316, 466, 668, 845
AluI	AGCT	4 cut(s)	316, 466, 668, 845
Alw21I	GWGCWC	4 cut(s)	318, 396, 810, 868
Alw26I	GTCTC	1 cut(s)	523
Alw44I	GTGCAC	2 cut(s)	806, 864
AlwNI	CAGNNNCTG	1 cut(s)	892
Aor13HI	TCCGGA	1 cut(s)	727
AoxI	GGCC	3 cut(s)	354, 468, 642
ApaLI	GTGCAC	2 cut(s)	806, 864
ApeKI	GCWGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	340, 366
AsuHPI	GGTGA	5 cut(s)	245, 287, 310, 860, 913
AvaII	GGWCC	2 cut(s)	340, 366
AxyI	CCTNAGG	1 cut(s)	386
BaeGI	GKGCMC	2 cut(s)	810, 868
BalI	TGGCCA	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	618, 650
Bbv12I	GWGCWC	4 cut(s)	318, 396, 810, 868
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	4 cut(s)	125, 285, 300, 357
BceAI	ACGGC	4 cut(s)	341, 425, 455, 597
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	787
BisI	GCNGC	4 cut(s)	435, 438, 525, 591
BlsI	GCNGC	4 cut(s)	436, 439, 526, 592
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	2 cut(s)	340, 366
BmgT120I	GGNCC	2 cut(s)	340, 366
BmiI	GGNNCC	2 cut(s)	801, 874
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	3 cut(s)	209, 447, 608
BmuI	ACTGGG	1 cut(s)	855
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	446
BsaBI	GATNNNNATC	2 cut(s)	243, 249
BsaHI	GRCGYC	1 cut(s)	702
BsaJI	CCNNGG	2 cut(s)	351, 522
BsaWI	WCCGGW	2 cut(s)	320, 727
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 89, 119
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 745, 820
Bse1I	ACTGG	1 cut(s)	861
Bse21I	CCTNAGG	1 cut(s)	386
Bse8I	GATNNNNATC	2 cut(s)	243, 249
BseAI	TCCGGA	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	351, 522
BseGI	GGATG	1 cut(s)	724
BseJI	GATNNNNATC	2 cut(s)	243, 249
BseLI	CCNNNNNNNGG	3 cut(s)	363, 745, 820
BseMII	CTCAG	4 cut(s)	59, 341, 400, 660
BseNI	ACTGG	1 cut(s)	861
BseRI	GAGGAG	7 cut(s)	125, 128, 174, 177, 180, 183, 686
BseSI	GKGCMC	2 cut(s)	810, 868
BseXI	GCAGC	1 cut(s)	602
Bsh1236I	CGCG	2 cut(s)	54, 524
BshFI	GGCC	3 cut(s)	356, 470, 644
BsiHKAI	GWGCWC	4 cut(s)	318, 396, 810, 868
BsiSI	CCGG	2 cut(s)	321, 728
BslI	CCNNNNNNNGG	3 cut(s)	363, 745, 820
BsmAI	GTCTC	1 cut(s)	523
BsmI	GAATGC	3 cut(s)	493, 506, 622
BsnI	GGCC	3 cut(s)	356, 470, 644
Bsp1286I	GDGCHC	4 cut(s)	318, 396, 810, 868
Bsp13I	TCCGGA	1 cut(s)	727
Bsp143I	GATC	3 cut(s)	238, 244, 250
BspANI	GGCC	3 cut(s)	356, 470, 644
BspCNI	CTCAG	4 cut(s)	60, 340, 399, 661
BspEI	TCCGGA	1 cut(s)	727
BspFNI	CGCG	2 cut(s)	54, 524
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	801, 874
BspMI	ACCTGC	1 cut(s)	787
BsrBI	CCGCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	861
BssECI	CCNNGG	2 cut(s)	351, 522
BssMI	GATC	3 cut(s)	238, 244, 250
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	702
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	68, 327, 386, 669
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	2 cut(s)	54, 524
BstKTI	GATC	3 cut(s)	241, 247, 253
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	3 cut(s)	238, 244, 250
BstMWI	GCNNNNNNNGC	4 cut(s)	533, 590, 596, 665
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	227
BstSLI	GKGCMC	2 cut(s)	810, 868
BstUI	CGCG	2 cut(s)	54, 524
BstV1I	GCAGC	1 cut(s)	602
BstXI	CCANNNNNNTGG	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	356, 470, 644
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	2 cut(s)	263, 376
BtsCI	GGATG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	868
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	892
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	340, 366
Cfr42I	CCGCGG	1 cut(s)	525
CseI	GACGC	1 cut(s)	542
CviAII	CATG	4 cut(s)	234, 242, 572, 646
DdeI	CTNAG	4 cut(s)	68, 327, 386, 669
DpnI	GATC	3 cut(s)	240, 246, 252
DpnII	GATC	3 cut(s)	238, 244, 250
EaeI	YGGCCR	2 cut(s)	468, 642
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	340, 366
Eco53kI	GAGCTC	1 cut(s)	316
Eco81I	CCTNAGG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	4 cut(s)	237, 245, 575, 649
FatI	CATG	4 cut(s)	233, 241, 571, 645
FauI	CCCGC	2 cut(s)	548, 884
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	435, 438, 525, 591
FokI	GGATG	1 cut(s)	711
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	435, 438, 525, 591
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	4 cut(s)	435, 438, 525, 591
HaeIII	GGCC	3 cut(s)	356, 470, 644
HapII	CCGG	2 cut(s)	321, 728
HgaI	GACGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	4 cut(s)	237, 245, 575, 649
HinfI	GANTC	6 cut(s)	5, 36, 56, 70, 93, 345
HpaII	CCGG	2 cut(s)	321, 728
HphI	GGTGA	5 cut(s)	245, 287, 310, 860, 913
Hpy166II	GTNNAC	3 cut(s)	565, 808, 866
Hpy188I	TCNGA	6 cut(s)	35, 218, 330, 344, 781, 842
Hpy188III	TCNNGA	3 cut(s)	242, 248, 728
Hpy8I	GTNNAC	3 cut(s)	565, 808, 866
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	5 cut(s)	153, 189, 553, 620, 709
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4IV	ACGT	2 cut(s)	702, 776
HpyCH4V	TGCA	7 cut(s)	222, 400, 484, 506, 599, 808, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	533, 590, 596, 665
HpyF3I	CTNAG	4 cut(s)	68, 327, 386, 669
HpySE526I	ACGT	2 cut(s)	702, 776
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	4 cut(s)	237, 245, 575, 649
Kpn2I	TCCGGA	1 cut(s)	727
Ksp22I	TGATCA	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	525
Kzo9I	GATC	3 cut(s)	238, 244, 250
LmnI	GCTCC	6 cut(s)	18, 313, 391, 419, 842, 878
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	3 cut(s)	209, 447, 608
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	702, 776
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	3 cut(s)	240, 246, 252
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	3 cut(s)	238, 244, 250
MboII	GAAGA	1 cut(s)	112
MfeI	CAATTG	1 cut(s)	401
MhlI	GDGCHC	4 cut(s)	318, 396, 810, 868
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	2 cut(s)	202, 401
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	3 cut(s)	50, 79, 87
MmeI	TCCRAC	2 cut(s)	603, 820
Mox20I	TGGCCA	1 cut(s)	644
MroI	TCCGGA	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	2 cut(s)	321, 728
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	3 cut(s)	493, 506, 622
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	54, 524
MwoI	GCNNNNNNNGC	4 cut(s)	533, 590, 596, 665
NdeII	GATC	3 cut(s)	238, 244, 250
NlaIII	CATG	4 cut(s)	237, 245, 575, 649
NlaIV	GGNNCC	2 cut(s)	801, 874
NspI	RCATGY	1 cut(s)	237
PagI	TCATGA	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 438
PctI	GAATGC	3 cut(s)	493, 506, 622
PfeI	GAWTC	3 cut(s)	5, 36, 345
PkrI	GCNGC	4 cut(s)	436, 439, 526, 592
PleI	GAGTC	3 cut(s)	50, 78, 87
PpsI	GAGTC	3 cut(s)	50, 78, 87
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	801, 874
PspPI	GGNCC	2 cut(s)	340, 366
PstNI	CAGNNNCTG	1 cut(s)	892
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	318
SacII	CCGCGG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	4 cut(s)	435, 438, 525, 591
Sau3AI	GATC	3 cut(s)	238, 244, 250
Sau96I	GGNCC	2 cut(s)	340, 366
SchI	GAGTC	3 cut(s)	50, 79, 87
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	4 cut(s)	318, 396, 810, 868
SfaNI	GCATC	3 cut(s)	209, 447, 608
Sfr303I	CCGCGG	1 cut(s)	525
SgrBI	CCGCGG	1 cut(s)	525
SinI	GGWCC	2 cut(s)	340, 366
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	2 cut(s)	202, 401
SspMI	CTAG	1 cut(s)	515
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	336
TaiI	ACGT	2 cut(s)	705, 779
TaqI	TCGA	2 cut(s)	91, 531
TaqII	GACCGA	2 cut(s)	383, 678
TasI	AATT	2 cut(s)	202, 401
TauI	GCSGC	3 cut(s)	437, 440, 527
TfiI	GAWTC	3 cut(s)	5, 36, 345
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	868
TseI	GCWGC	1 cut(s)	590
TspDTI	ATGAA	1 cut(s)	560
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	1 cut(s)	868
VneI	GTGCAC	2 cut(s)	806, 864
VpaK11BI	GGWCC	2 cut(s)	340, 366
XceI	RCATGY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	515
ZraI	GACGTC	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.