Rorug02G0137700

cadmium zinc-transporting ATPase HMA1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
12120273 .. 12121972
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0137700.1

Sequence Viewer

Length: 1557 bp
ATGTTTCCTCTCAATCCCACACATATGCCTAAATCAGTGGCCTCCCTAATATCAGACTATGCTTCCTCCCTAATCTCAGCCTATGCTTCCATTACAGCATTAGGGATGTTGTTCCGTGCAGTTGTCAAAGAACTTAAAGACCTCATTCCCCAGTGGGTTAGATCATACATATACTTGAAACTTCGGAACTACTTCTTTAAACCTCCCCCAAATGATCACCTAACTCTTGTCATAAAACAGACCAGCGGCATAGTGCTTAACGAGGTCTATGAGAAGGTAGATGTCTACCTTGGAGCCAAGATTAGTCCCTCCGACACACGTCTTGAACTGAGCAAAACATACCGGCAAAAAACCATCAGCCTTGCCATTGAAAAAAGAGGCCAAGTTGTCAAGGACACCTTTGATGACATTGAGCTCCAGTGGCGCTACATAGCCAAATCAAATAAGTCCTCCAAAACCAACAATAGTCCTGCTGCTGATGATGAAGAAGTGAAACATCACTGTGGCTTTGAGTTAACATTCAATAAGAAACACAAATCCAAAGTGATGGACTCCTACATGCCCTATGTGTTTGCTCAGGCTAATTCCATTAGGCAACGGGAAAAGGTTCTAAAGCTTTATTGCTCTGCCAATTATAGTTCATCTAGAAGTAGCATAGATCTTGTGCACCCTGCTACTTTTGATACAGTGGCAATGGAACCAGAACTTAAGAAAATGATTATAGATGACTTGGATAGGTTTCTGGAGAGGAGAGAATTATATAAGAAGGTTGGGAAGGCATGGAAAAGAGGATATTTGTTATACGGTCCACCTGGAACTGGAAAGTCTAGCTTAATTGCGGCCATAGCCAATTATCTCAAGTTTGATATATATGATTTGGAGCTTTCTAGTATTTTCAGCAACTCTGACCTGAGAAGGGTATTGCTGTCTACTACTAATCGTTCTATTGTGGTCATTGAGGATATTGATTGCAGTGTGAAGATCAACAATCGGGAAACAGCTATGTCATCTAAAACAGCAACACCCGGTTATCCTGCAAGCAAGTTCACACTCTCGGGCCTACTGAACTTCATAGATGGTCTGTGGTCATGCTCCGGCGATGAGAGAATAATTATCTTCACCACCAACCACAAGGACAAATTAGACCCTGCACTGTTGCGTCCAGGTCGAATGGACGTGCACATTCACTTGTCATATTGCACTCCAAATGGATTCAGAACCTTAGCATCTAATTACCTTGGCATTCATGAAAGCAACCCTCATCACCTCTGTGGGGAAATTGAAAGCTTAATAGAGAGCACAGAGGTCACCCCTGCAGCTGTAGCTGAGGCGCTGATGAAGAGCGATGATGCGGATGTTGTTCTTGAAGGGCTTGTCAAATTCCTCAAAGAAAAGAAGGCCGCAGATGATGAGTTAAAAAAGGCCAAAAAAGCTGATGAGGAAAGGACCAAGGCAGCAGAGGAGCAAGGGACTAACAAAGCAGAGAGGCCGGAAAGGGACGAGGATGTGAGCACAAACTGCGAGAAAAAATGGCAAAAGACAGAAGCCACATTTTGA

Protein Analysis

518

Amino Acids

58.57

Weight (kDa)

8.39

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 49 - 144 4.5e-16 Domain associated at C-terminal with AAA
AAA PF00004 265 - 398 8.5e-21 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 400 - 473 1.6e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013554)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 285, 929
AciI CCGC 4 cut(s) 246, 839, 1352, 1401
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 1 cut(s) 1379
AfiI CCNNNNNNNGG 3 cut(s) 818, 916, 1273
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 6 cut(s) 178, 326, 371, 523, 1283, 1367
AjiI CACGTC 2 cut(s) 320, 1177
AjnI CCWGG 2 cut(s) 811, 1162
AleI CACNNNNGTG 1 cut(s) 1269
AluBI AGCT 9 cut(s) 415, 616, 831, 883, 1001, 1287, 1319, 1325, 1433
AluI AGCT 9 cut(s) 415, 616, 831, 883, 1001, 1287, 1319, 1325, 1433
Alw21I GWGCWC 5 cut(s) 417, 669, 1182, 1301, 1514
Alw44I GTGCAC 2 cut(s) 665, 1178
Ama87I CYCGRG 1 cut(s) 1054
AoxI GGCC 7 cut(s) 39, 379, 840, 1057, 1398, 1422, 1487
ApaLI GTGCAC 2 cut(s) 665, 1178
ApeKI GCWGC 3 cut(s) 473, 1316, 1454
ApoI RAATTY 1 cut(s) 1379
Asp700I GAANNNNTTC 2 cut(s) 191, 606
AspLEI GCGC 2 cut(s) 426, 1333
AspS9I GGNCC 3 cut(s) 806, 1057, 1446
AsuC2I CCSGG 1 cut(s) 1026
AsuHPI GGTGA 4 cut(s) 209, 1111, 1256, 1300
AvaI CYCGRG 1 cut(s) 1054
AvaII GGWCC 2 cut(s) 806, 1446
BaeGI GKGCMC 2 cut(s) 669, 1182
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 5 cut(s) 417, 669, 1182, 1301, 1514
BbvCI CCTCAGC 1 cut(s) 1326
BbvI GCAGC 3 cut(s) 460, 1328, 1466
BccI CCATC 3 cut(s) 362, 541, 1070
BciT130I CCWGG 2 cut(s) 813, 1164
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 1026
BfaI CTAG 3 cut(s) 645, 828, 888
BfmI CTRYAG 2 cut(s) 1314, 1320
BfoI RGCGCY 2 cut(s) 427, 1334
BfrI CTTAAG 1 cut(s) 707
BglII AGATCT 1 cut(s) 658
BisI GCNGC 6 cut(s) 247, 474, 840, 1317, 1401, 1455
BlsI GCNGC 6 cut(s) 248, 475, 841, 1318, 1402, 1456
Bme1390I CCNGG 3 cut(s) 813, 1026, 1164
Bme18I GGWCC 2 cut(s) 806, 1446
BmeT110I CYCGRG 1 cut(s) 1054
BmgBI CACGTC 2 cut(s) 320, 1177
BmgT120I GGNCC 3 cut(s) 806, 1057, 1446
BmiI GGNNCC 2 cut(s) 295, 699
BmrFI CCNGG 3 cut(s) 813, 1026, 1164
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 1235, 1339
BmuI ACTGGG 1 cut(s) 145
BoxI GACNNNNGTC 1 cut(s) 318
BpmI CTGGAG 2 cut(s) 401, 764
Bpu10I CCTNAGC 3 cut(s) 576, 1222, 1326
BpuEI CTTGAG 1 cut(s) 842
BpuMI CCSGG 1 cut(s) 1026
BsaJI CCNNGG 3 cut(s) 289, 1237, 1449
Bsc4I CCNNNNNNNGG 3 cut(s) 818, 916, 1273
Bse118I RCCGGY 1 cut(s) 342
Bse1I ACTGG 3 cut(s) 151, 418, 823
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 2 cut(s) 813, 1164
BseDI CCNNGG 3 cut(s) 289, 1237, 1449
BseGI GGATG 3 cut(s) 111, 1360, 1510
BseLI CCNNNNNNNGG 3 cut(s) 818, 916, 1273
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 5 cut(s) 90, 320, 590, 902, 1317
BseNI ACTGG 3 cut(s) 151, 418, 823
BseRI GAGGAG 2 cut(s) 763, 1475
BseSI GKGCMC 2 cut(s) 669, 1182
BseXI GCAGC 3 cut(s) 460, 1328, 1466
BsgI GTGCAG 2 cut(s) 138, 1134
BshFI GGCC 7 cut(s) 41, 381, 842, 1059, 1400, 1424, 1489
BsiHKAI GWGCWC 5 cut(s) 417, 669, 1182, 1301, 1514
BsiHKCI CYCGRG 1 cut(s) 1054
BsiSI CCGG 4 cut(s) 343, 1026, 1095, 1490
BslFI GGGAC 3 cut(s) 291, 1483, 1511
BslI CCNNNNNNNGG 3 cut(s) 818, 916, 1273
BsmFI GGGAC 3 cut(s) 291, 1483, 1511
BsmI GAATGC 1 cut(s) 1242
BsnI GGCC 7 cut(s) 41, 381, 842, 1059, 1400, 1424, 1489
BsoBI CYCGRG 1 cut(s) 1054
Bsp1286I GDGCHC 5 cut(s) 417, 669, 1182, 1301, 1514
Bsp143I GATC 4 cut(s) 161, 214, 658, 981
BspACI CCGC 4 cut(s) 246, 839, 1352, 1401
BspANI GGCC 7 cut(s) 41, 381, 842, 1059, 1400, 1424, 1489
BspCNI CTCAG 5 cut(s) 89, 321, 589, 903, 1318
BspHI TCATGA 1 cut(s) 1246
BspLI GGNNCC 2 cut(s) 295, 699
BspMAI CTGCAG 1 cut(s) 1318
BspQI GCTCTTC 1 cut(s) 1334
BspTI CTTAAG 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 342
BsrI ACTGG 3 cut(s) 151, 418, 823
BssAI RCCGGY 1 cut(s) 342
BssECI CCNNGG 3 cut(s) 289, 1237, 1449
BssMI GATC 4 cut(s) 161, 214, 658, 981
BssT1I CCWWGG 3 cut(s) 289, 1237, 1449
Bst2UI CCWGG 2 cut(s) 813, 1164
Bst4CI ACNGT 4 cut(s) 503, 688, 806, 1155
Bst6I CTCTTC 1 cut(s) 1334
BstAFI CTTAAG 1 cut(s) 707
BstAPI GCANNNNNTGC 1 cut(s) 1518
BstC8I GCNNGC 1 cut(s) 1039
BstDEI CTNAG 6 cut(s) 76, 329, 576, 911, 1222, 1326
BstEII GGTNACC 1 cut(s) 1306
BstF5I GGATG 3 cut(s) 111, 1360, 1510
BstH2I RGCGCY 2 cut(s) 427, 1334
BstHHI GCGC 2 cut(s) 426, 1333
BstKTI GATC 4 cut(s) 164, 217, 661, 984
BstMBI GATC 4 cut(s) 161, 214, 658, 981
BstMWI GCNNNNNNNGC 5 cut(s) 421, 845, 1322, 1430, 1518
BstNI CCWGG 2 cut(s) 813, 1164
BstNSI RCATGY 1 cut(s) 562
BstPAI GACNNNNGTC 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 1306
BstSCI CCNGG 3 cut(s) 811, 1024, 1162
BstSFI CTRYAG 2 cut(s) 1314, 1320
BstSLI GKGCMC 2 cut(s) 669, 1182
BstV1I GCAGC 3 cut(s) 460, 1328, 1466
BstX2I RGATCY 1 cut(s) 658
BstXI CCANNNNNNTGG 1 cut(s) 547
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 7 cut(s) 41, 381, 842, 1059, 1400, 1424, 1489
BtgZI GCGATG 2 cut(s) 1113, 1359
BtrI CACGTC 2 cut(s) 320, 1177
BtsCI GGATG 3 cut(s) 111, 1360, 1510
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 7 cut(s) 42, 158, 425, 499, 693, 979, 1151
Cac8I GCNNGC 1 cut(s) 1039
CciI TCATGA 1 cut(s) 1246
CfoI GCGC 2 cut(s) 426, 1333
Cfr10I RCCGGY 1 cut(s) 342
Cfr13I GGNCC 3 cut(s) 806, 1057, 1446
CseI GACGC 1 cut(s) 1148
CviAII CATG 4 cut(s) 559, 780, 1089, 1247
DdeI CTNAG 6 cut(s) 76, 329, 576, 911, 1222, 1326
DpnI GATC 4 cut(s) 163, 216, 660, 983
DpnII GATC 4 cut(s) 161, 214, 658, 981
DraI TTTAAA 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 1 cut(s) 1334
EarI CTCTTC 1 cut(s) 1334
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 3 cut(s) 289, 1237, 1449
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 806, 1446
Eco53kI GAGCTC 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 1054
Eco91I GGTNACC 1 cut(s) 1306
EcoICRI GAGCTC 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 1306
EcoRII CCWGG 2 cut(s) 811, 1162
EcoT14I CCWWGG 3 cut(s) 289, 1237, 1449
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 3 cut(s) 289, 1237, 1449
FaeI CATG 4 cut(s) 562, 783, 1092, 1250
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 815, 847
FaqI GGGAC 3 cut(s) 291, 1483, 1511
FatI CATG 4 cut(s) 558, 779, 1088, 1246
FauNDI CATATG 1 cut(s) 24
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 2 cut(s) 285, 929
Fnu4HI GCNGC 6 cut(s) 247, 474, 840, 1317, 1401, 1455
FokI GGATG 3 cut(s) 118, 1367, 1517
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 6 cut(s) 247, 474, 840, 1317, 1401, 1455
FspBI CTAG 3 cut(s) 645, 828, 888
GlaI GCGC 2 cut(s) 425, 1332
GluI GCNGC 6 cut(s) 247, 474, 840, 1317, 1401, 1455
GsuI CTGGAG 2 cut(s) 401, 764
HaeII RGCGCY 2 cut(s) 427, 1334
HaeIII GGCC 7 cut(s) 41, 381, 842, 1059, 1400, 1424, 1489
HapII CCGG 4 cut(s) 343, 1026, 1095, 1490
HgaI GACGC 1 cut(s) 1148
HhaI GCGC 2 cut(s) 426, 1333
Hin1II CATG 4 cut(s) 562, 783, 1092, 1250
Hin6I GCGC 2 cut(s) 424, 1331
HinP1I GCGC 2 cut(s) 424, 1331
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 2 cut(s) 614, 1285
HinfI GANTC 2 cut(s) 551, 1212
HpaI GTTAAC 1 cut(s) 516
HpaII CCGG 4 cut(s) 343, 1026, 1095, 1490
HphI GGTGA 4 cut(s) 209, 1111, 1256, 1300
Hpy166II GTNNAC 7 cut(s) 286, 516, 667, 809, 930, 1047, 1180
Hpy188I TCNGA 5 cut(s) 55, 186, 313, 907, 1217
Hpy188III TCNNGA 6 cut(s) 323, 645, 743, 992, 1247, 1364
Hpy8I GTNNAC 7 cut(s) 286, 516, 667, 809, 930, 1047, 1180
HpyAV CCTTC 6 cut(s) 268, 760, 769, 909, 1361, 1390
HpyCH4III ACNGT 4 cut(s) 503, 688, 806, 1155
HpyCH4IV ACGT 2 cut(s) 319, 1176
HpyCH4V TGCA 8 cut(s) 119, 667, 972, 1037, 1151, 1180, 1200, 1316
HpyF10VI GCNNNNNNNGC 5 cut(s) 421, 845, 1322, 1430, 1518
HpyF3I CTNAG 6 cut(s) 76, 329, 576, 911, 1222, 1326
HpySE526I ACGT 2 cut(s) 319, 1176
Hsp92II CATG 4 cut(s) 562, 783, 1092, 1250
HspAI GCGC 2 cut(s) 424, 1331
Ksp22I TGATCA 1 cut(s) 214
KspAI GTTAAC 1 cut(s) 516
Kzo9I GATC 4 cut(s) 161, 214, 658, 981
LguI GCTCTTC 1 cut(s) 1334
LmnI GCTCC 5 cut(s) 293, 420, 880, 1097, 1462
Lsp1109I GCAGC 3 cut(s) 460, 1328, 1466
LweI GCATC 2 cut(s) 1235, 1339
MaeI CTAG 3 cut(s) 645, 828, 888
MaeII ACGT 2 cut(s) 319, 1176
MaeIII GTNAC 1 cut(s) 1306
MalI GATC 4 cut(s) 163, 216, 660, 983
MboI GATC 4 cut(s) 161, 214, 658, 981
MboII GAAGA 4 cut(s) 497, 991, 1108, 1351
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 5 cut(s) 417, 669, 1182, 1301, 1514
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 2 cut(s) 191, 606
MseI TTAA 8 cut(s) 135, 198, 258, 515, 708, 833, 1289, 1415
MslI CAYNNNNRTG 3 cut(s) 23, 501, 1269
MspA1I CMGCKG 2 cut(s) 246, 1319
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 4 cut(s) 343, 1026, 1095, 1490
MspR9I CCNGG 3 cut(s) 813, 1026, 1164
Mva1269I GAATGC 1 cut(s) 1242
MvaI CCWGG 2 cut(s) 813, 1164
MwoI GCNNNNNNNGC 5 cut(s) 421, 845, 1322, 1430, 1518
NciI CCSGG 1 cut(s) 1026
NdeI CATATG 1 cut(s) 24
NdeII GATC 4 cut(s) 161, 214, 658, 981
NlaIII CATG 4 cut(s) 562, 783, 1092, 1250
NlaIV GGNNCC 2 cut(s) 295, 699
NmuCI GTSAC 1 cut(s) 1306
NspI RCATGY 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 1269
PagI TCATGA 1 cut(s) 1246
PciSI GCTCTTC 1 cut(s) 1334
PctI GAATGC 1 cut(s) 1242
PdmI GAANNNNTTC 2 cut(s) 191, 606
PfeI GAWTC 1 cut(s) 1212
PkrI GCNGC 6 cut(s) 248, 475, 841, 1318, 1402, 1456
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
PshAI GACNNNNGTC 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 811, 1162
PspEI GGTNACC 1 cut(s) 1306
PspGI CCWGG 2 cut(s) 811, 1162
PspN4I GGNNCC 2 cut(s) 295, 699
PspPI GGNCC 3 cut(s) 806, 1057, 1446
PstI CTGCAG 1 cut(s) 1318
PsuI RGATCY 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 1319
RseI CAYNNNNRTG 3 cut(s) 23, 501, 1269
SacI GAGCTC 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 1334
SaqAI TTAA 8 cut(s) 135, 198, 258, 515, 708, 833, 1289, 1415
SatI GCNGC 6 cut(s) 247, 474, 840, 1317, 1401, 1455
Sau3AI GATC 4 cut(s) 161, 214, 658, 981
Sau96I GGNCC 3 cut(s) 806, 1057, 1446
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 3 cut(s) 813, 1026, 1164
SduI GDGCHC 5 cut(s) 417, 669, 1182, 1301, 1514
SfaNI GCATC 2 cut(s) 1235, 1339
SfcI CTRYAG 2 cut(s) 1314, 1320
SinI GGWCC 2 cut(s) 806, 1446
SmiMI CAYNNNNRTG 3 cut(s) 23, 501, 1269
SmlI CTYRAG 2 cut(s) 707, 857
SmoI CTYRAG 2 cut(s) 707, 857
SsiI CCGC 4 cut(s) 246, 839, 1352, 1401
SspMI CTAG 3 cut(s) 645, 828, 888
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 811, 1024, 1162
StyI CCWWGG 3 cut(s) 289, 1237, 1449
TaaI ACNGT 4 cut(s) 503, 688, 806, 1155
TaiI ACGT 2 cut(s) 322, 1179
TaqI TCGA 1 cut(s) 1168
TauI GCSGC 3 cut(s) 249, 842, 1403
TfiI GAWTC 1 cut(s) 1212
Tru1I TTAA 8 cut(s) 135, 198, 258, 515, 708, 833, 1289, 1415
Tru9I TTAA 8 cut(s) 135, 198, 258, 515, 708, 833, 1289, 1415
TscAI CASTG 7 cut(s) 42, 158, 425, 506, 693, 979, 1158
TseFI GTSAC 1 cut(s) 1306
TseI GCWGC 3 cut(s) 473, 1316, 1454
Tsp45I GTSAC 1 cut(s) 1306
TspDTI ATGAA 6 cut(s) 498, 630, 1060, 1235, 1263, 1352
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 7 cut(s) 42, 158, 425, 506, 693, 979, 1158
Vha464I CTTAAG 1 cut(s) 707
VneI GTGCAC 2 cut(s) 665, 1178
VpaK11BI GGWCC 2 cut(s) 806, 1446
XapI RAATTY 1 cut(s) 1379
XbaI TCTAGA 1 cut(s) 644
XceI RCATGY 1 cut(s) 562
XmiI GTMKAC 2 cut(s) 285, 929
XmnI GAANNNNTTC 2 cut(s) 191, 606
XspI CTAG 3 cut(s) 645, 828, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.