MD15G1405900.v1.1

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012299
Physical Location & Seq
Forward (+)
50660236 .. 50662757
2522 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1405900.v1.1.491

Sequence Viewer

Length: 1605 bp
ATGGCCGACGAAATCCCCATAACACCACCATCTGACCTAGCGCCGCCGACACCGCCCCCTGCCGCTTCTGAGCCTGAAGCACCGGCTTTGACGAAACCAGAGTCTAAGGAAGACGCACCCCCACCACCACCATCGCTGTTAGAAGTGACAGAGTCTGAGAAAGAAGAGGCACTTGCAGTACCACCAGTTGCGGCGGCGGCGGCGGCAGTGGTGGAGTCTGAGCCGGTGAAAGAAGAGGCGGAGAAAAAGCAGATTCCTCGATCTTTGATTTCGTTCAAGGAGGAGAGTAACGTAGTGTCCGATCTCTCAGATTCAGAGAGAAAAGCTCTTCAAGAACTGAAGCAGCTCGTCCAGGAAGCTCTCAACACTCACCAGTTCACATCCCCGAAAGCCGAAGCACCAGCACCAGCACAAGCACCGCCACCGCCAGGAGCACCGGTTTCCAAATCGGAATCAGAATCAAAACCAACCCATGAACCCAAAATCGAAGAGCAGCCACTGAAGGAAGCAGAGGAAGTAGCTAAAGAAACAGCACAATCGGTGGTGCCGGCGGCGGCGGCGGCGGAGGAGGAAGTGTCCATTTGGGGAGTCCCTCTTCTCAAGGACGATAAGAGCGATGTGATTCTTCTCAAGTTCCTGAGGGCGAGGGACTTCAAGGTGAAGGATGCCTTTGTGATGCTTCGCAACACTATTCAATGGCGGAAAGGCTTCGGGATCGACGCTCTTGTGGAGGAAGATCTTGGTGATGATTTGGAGAAGGTGGTGTTTGTTCATGGGTACGATAGGGATGGTCACCCTGTGTGTTACAATGTGTTCGGAGAGTTTCAGAACAAAGAACTGTACCAGAAAACATTCTCGGACGAGGAAAAGCGGACCAAGTTTCTCCGGTGGCGGGTTCAGTTCTTGGAGAAGGGTATTCGGAAGCTTGATTTCACTCCCGGTGGTGTTTGTAGTATTTTTCAGGTCAATGATCTCAAGAATTCTCCTGGCCCGGCTAAGAAGGAACTTCGAGTGGCCACCAAACAGGCTCTTCACTTGCTCCAGGACAATTATCCCGAATTCGTAGCCAAACAGGTGTTCATCAATGCGCCGTGGTGGTATCTTGCATTCTACACCATGATCAGTCCGTTCTTGACGCAGAGGACGAAAAGCAAGTTTGTTGTTGCTAGCCCAGCCAAAACCGCCGAAACCCTTTTCAAGTACATCTCTCCTGAGCATGTTCCGATCCAGTACGGTGGCTTGAGTGTCGATTACTGTGACTGCAACCCTGAATTTACCATCGAGGATCCAGTCGCCGATGTTACAGTCAAACCTGCAACGAAACAAACTGTGGAAATTATAATATATGAGAAGTGCACCATTGTGTGGGAGCTCCGTGTGGTCGGATGGGAGGTGAGCTATGGGGCTGAGTTTGTGCCCAATGCCGAAAATGGATACACAATCATCGTACAGAAAGCCACAAAGATGAGCCCGACCGATGAGCCAGTGGTGAGTAACAGCTTCAAAGTTACGGAACTGGGTAAAATATTGCTCAAGATTGACAACCCAACCCCGAAAAAGAAAAGGCTTCTGTACAGGTTCAAGATCGAACCCCTCGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

535

Amino Acids

59.58

Weight (kDa)

5.09

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 175 - 229 5.2e-11 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 253 - 413 5.2e-31 CRAL/TRIO domain
GOLD_PATL1_C PF25099 437 - 521 2.6e-37 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72160
fragaria_vesca FvH4_5g31710 FvH4_5g31710
malus_domestica MD08G1218000.v1.1 MD15G1405900.v1.1
prunus_persica Prupe.1G555300_v2.0.a1
pyrus_communis pycom08g18900 pycom15g36270
rosa_chinensis RchiOBHm_Chr7g0227591
rosa_laevigata RLG00000001634
rosa_multiflora Rmu_sc0001772.1_g000008
rosa_roxburghii Rroxscaffold_3G00232020
rosa_rugosa Rorug07G0242000 Rorug07G0242100
rosa_samantha Rh7AG395500 Rh7BG377300 Rh7CG414200 Rh7DG391300
rosa_wichuraiana Rw7G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1340
Acc36I ACCTGC 1 cut(s) 1321
AccB1I GGYRCC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 1365
AclWI GGATC 4 cut(s) 722, 1219, 1280, 1293
AcoI YGGCCR 2 cut(s) 3, 1014
AcsI RAATTY 3 cut(s) 979, 1058, 1271
AcuI CTGAAG 3 cut(s) 96, 359, 521
AdeI CACNNNGTG 1 cut(s) 799
AfaI GTAC 7 cut(s) 180, 779, 842, 1202, 1232, 1449, 1574
AfiI CCNNNNNNNGG 3 cut(s) 428, 892, 1365
AgeI ACCGGT 1 cut(s) 436
AgsI TTSAA 7 cut(s) 277, 332, 655, 695, 1198, 1504, 1582
AjnI CCWGG 4 cut(s) 351, 427, 985, 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AleI CACNNNNGTG 1 cut(s) 1361
AluBI AGCT 8 cut(s) 326, 346, 359, 521, 925, 1372, 1398, 1500
AluI AGCT 8 cut(s) 326, 346, 359, 521, 925, 1372, 1398, 1500
Alw21I GWGCWC 3 cut(s) 436, 1358, 1374
Alw44I GTGCAC 1 cut(s) 1354
AlwI GGATC 4 cut(s) 722, 1219, 1280, 1293
AlwNI CAGNNNCTG 2 cut(s) 155, 499
AoxI GGCC 3 cut(s) 3, 988, 1014
ApaLI GTGCAC 1 cut(s) 1354
ApeKI GCWGC 2 cut(s) 343, 493
ApoI RAATTY 3 cut(s) 979, 1058, 1271
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AsiGI ACCGGT 1 cut(s) 436
Asp700I GAANNNNTTC 2 cut(s) 707, 851
AspLEI GCGC 2 cut(s) 43, 1090
AspS9I GGNCC 2 cut(s) 873, 989
AsuC2I CCSGG 2 cut(s) 939, 992
AsuHPI GGTGA 7 cut(s) 238, 362, 670, 755, 785, 1405, 1501
AsuNHI GCTAGC 1 cut(s) 1166
AvaII GGWCC 1 cut(s) 873
AxyI CCTNAGG 1 cut(s) 638
BaeGI GKGCMC 2 cut(s) 1358, 1419
BalI TGGCCA 1 cut(s) 1016
BamHI GGATCC 1 cut(s) 1285
BanI GGYRCC 1 cut(s) 544
BanII GRGCYC 2 cut(s) 1374, 1472
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 3 cut(s) 436, 1358, 1374
BbvI GCAGC 2 cut(s) 355, 505
BccI CCATC 5 cut(s) 37, 139, 782, 1286, 1380
BceAI ACGGC 1 cut(s) 1075
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 4 cut(s) 353, 429, 987, 1043
BciVI GTATCC 1 cut(s) 1427
BclI TGATCA 1 cut(s) 1119
BcnI CCSGG 2 cut(s) 939, 992
BfaI CTAG 2 cut(s) 38, 1167
BfoI RGCGCY 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 1321
BfuI GTATCC 1 cut(s) 1427
BglII AGATCT 1 cut(s) 736
Bme1390I CCNGG 6 cut(s) 353, 429, 939, 987, 992, 1043
Bme18I GGWCC 1 cut(s) 873
BmgT120I GGNCC 2 cut(s) 873, 989
BmiI GGNNCC 2 cut(s) 546, 1287
BmrFI CCNGG 6 cut(s) 353, 429, 939, 987, 992, 1043
BmrI ACTGGG 1 cut(s) 1526
BmsI GCATC 2 cut(s) 655, 666
BmtI GCTAGC 1 cut(s) 1170
BmuI ACTGGG 1 cut(s) 1526
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 1 cut(s) 1025
Bpu10I CCTNAGC 1 cut(s) 1212
BpuEI CTTGAG 5 cut(s) 584, 614, 959, 1261, 1517
BpuMI CCSGG 2 cut(s) 939, 992
BsaJI CCNNGG 1 cut(s) 1091
BsaWI WCCGGW 2 cut(s) 436, 885
BsaXI ACNNNNNCTCC 4 cut(s) 423, 453, 560, 590
Bsc4I CCNNNNNNNGG 3 cut(s) 428, 892, 1365
Bse118I RCCGGY 4 cut(s) 82, 223, 436, 547
Bse1I ACTGG 6 cut(s) 185, 373, 1228, 1289, 1484, 1521
Bse21I CCTNAGG 1 cut(s) 638
BseBI CCWGG 4 cut(s) 353, 429, 987, 1043
BseDI CCNNGG 1 cut(s) 1091
BseGI GGATG 4 cut(s) 380, 670, 793, 1391
BseLI CCNNNNNNNGG 3 cut(s) 428, 892, 1365
BseMII CTCAG 7 cut(s) 60, 147, 210, 321, 629, 1203, 1398
BseNI ACTGG 6 cut(s) 185, 373, 1228, 1289, 1484, 1521
BseRI GAGGAG 2 cut(s) 296, 581
BseSI GKGCMC 2 cut(s) 1358, 1419
BseXI GCAGC 2 cut(s) 355, 505
BseYI CCCAGC 1 cut(s) 1171
Bsh1285I CGRYCG 1 cut(s) 1476
BshFI GGCC 3 cut(s) 5, 990, 1016
BshNI GGYRCC 1 cut(s) 544
BshTI ACCGGT 1 cut(s) 436
BsiEI CGRYCG 1 cut(s) 1476
BsiHKAI GWGCWC 3 cut(s) 436, 1358, 1374
BsiSI CCGG 7 cut(s) 83, 224, 437, 548, 886, 939, 992
BslFI GGGAC 2 cut(s) 575, 662
BslI CCNNNNNNNGG 3 cut(s) 428, 892, 1365
BsmFI GGGAC 2 cut(s) 575, 662
BsmI GAATGC 1 cut(s) 1106
BsnI GGCC 3 cut(s) 5, 990, 1016
Bsp1286I GDGCHC 5 cut(s) 436, 1358, 1374, 1419, 1472
Bsp1407I TGTACA 1 cut(s) 1572
Bsp143I GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
BspANI GGCC 3 cut(s) 5, 990, 1016
BspCNI CTCAG 7 cut(s) 61, 148, 211, 320, 630, 1204, 1399
BspLI GGNNCC 2 cut(s) 546, 1287
BspMI ACCTGC 1 cut(s) 1321
BspOI GCTAGC 1 cut(s) 1170
BspPI GGATC 4 cut(s) 722, 1219, 1280, 1293
BspQI GCTCTTC 3 cut(s) 333, 483, 1035
BspT107I GGYRCC 1 cut(s) 544
BsrFI RCCGGY 4 cut(s) 82, 223, 436, 547
BsrGI TGTACA 1 cut(s) 1572
BsrI ACTGG 6 cut(s) 185, 373, 1228, 1289, 1484, 1521
BssAI RCCGGY 4 cut(s) 82, 223, 436, 547
BssECI CCNNGG 1 cut(s) 1091
BssMI GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
Bst2UI CCWGG 4 cut(s) 353, 429, 987, 1043
Bst4CI ACNGT 5 cut(s) 840, 1235, 1256, 1306, 1330
Bst6I CTCTTC 6 cut(s) 159, 228, 333, 483, 600, 1035
BstAUI TGTACA 1 cut(s) 1572
BstC8I GCNNGC 2 cut(s) 549, 1168
BstDEI CTNAG 9 cut(s) 69, 105, 156, 219, 307, 638, 996, 1212, 1407
BstDSI CCRYGG 1 cut(s) 1091
BstEII GGTNACC 1 cut(s) 791
BstF5I GGATG 4 cut(s) 380, 670, 793, 1391
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 2 cut(s) 43, 1090
BstKTI GATC 9 cut(s) 263, 304, 717, 739, 973, 1122, 1227, 1288, 1587
BstMBI GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
BstMCI CGRYCG 1 cut(s) 1476
BstMWI GCNNNNNNNGC 8 cut(s) 52, 197, 200, 203, 557, 560, 1172, 1181
BstNI CCWGG 4 cut(s) 353, 429, 987, 1043
BstNSI RCATGY 1 cut(s) 1220
BstPI GGTNACC 1 cut(s) 791
BstSCI CCNGG 6 cut(s) 351, 427, 937, 985, 990, 1041
BstSLI GKGCMC 2 cut(s) 1358, 1419
BstV1I GCAGC 2 cut(s) 355, 505
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 736, 1285
BstXI CCANNNNNNTGG 1 cut(s) 1235
BstYI RGATCY 2 cut(s) 736, 1285
Bsu36I CCTNAGG 1 cut(s) 638
BsuI GTATCC 1 cut(s) 1427
BsuRI GGCC 3 cut(s) 5, 990, 1016
BtgI CCRYGG 1 cut(s) 1091
BtgZI GCGATG 2 cut(s) 117, 630
BtsCI GGATG 4 cut(s) 380, 670, 793, 1391
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 213, 497, 1491
BveI ACCTGC 1 cut(s) 1321
Cac8I GCNNGC 2 cut(s) 549, 1168
CaiI CAGNNNCTG 2 cut(s) 155, 499
CfoI GCGC 2 cut(s) 43, 1090
Cfr10I RCCGGY 4 cut(s) 82, 223, 436, 547
Cfr13I GGNCC 2 cut(s) 873, 989
CseI GACGC 3 cut(s) 122, 728, 1144
Csp6I GTAC 7 cut(s) 179, 778, 841, 1201, 1231, 1448, 1573
CspAI ACCGGT 1 cut(s) 436
CviAII CATG 4 cut(s) 473, 773, 1117, 1217
CviQI GTAC 7 cut(s) 179, 778, 841, 1201, 1231, 1448, 1573
DdeI CTNAG 9 cut(s) 69, 105, 156, 219, 307, 638, 996, 1212, 1407
DpnI GATC 9 cut(s) 262, 303, 716, 738, 972, 1121, 1226, 1287, 1586
DpnII GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
DraIII CACNNNGTG 1 cut(s) 799
EaeI YGGCCR 2 cut(s) 3, 1014
Eam1104I CTCTTC 6 cut(s) 159, 228, 333, 483, 600, 1035
EarI CTCTTC 6 cut(s) 159, 228, 333, 483, 600, 1035
EciI GGCGGA 3 cut(s) 254, 578, 715
Ecl136II GAGCTC 1 cut(s) 1372
Eco24I GRGCYC 2 cut(s) 1374, 1472
Eco47I GGWCC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 1372
Eco57I CTGAAG 3 cut(s) 96, 359, 521
Eco81I CCTNAGG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 1372
EcoO65I GGTNACC 1 cut(s) 791
EcoRI GAATTC 2 cut(s) 979, 1058
EcoRII CCWGG 4 cut(s) 351, 427, 985, 1041
EcoT38I GRGCYC 2 cut(s) 1374, 1472
FaeI CATG 4 cut(s) 476, 776, 1120, 1220
FaiI YATR 9 cut(s) 20, 474, 774, 1118, 1218, 1340, 1345, 1347, 1401
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 653, 685
FaqI GGGAC 2 cut(s) 575, 662
FatI CATG 4 cut(s) 472, 772, 1116, 1216
FauI CCCGC 1 cut(s) 885
FbaI TGATCA 1 cut(s) 1119
FokI GGATG 4 cut(s) 367, 677, 800, 1398
FriOI GRGCYC 2 cut(s) 1374, 1472
FspBI CTAG 2 cut(s) 38, 1167
GlaI GCGC 2 cut(s) 42, 1089
GsaI CCCAGC 1 cut(s) 1175
GsuI CTGGAG 1 cut(s) 1025
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 3 cut(s) 5, 990, 1016
HapII CCGG 7 cut(s) 83, 224, 437, 548, 886, 939, 992
HgaI GACGC 3 cut(s) 122, 728, 1144
HhaI GCGC 2 cut(s) 43, 1090
Hin1II CATG 4 cut(s) 476, 776, 1120, 1220
Hin6I GCGC 2 cut(s) 41, 1088
HinP1I GCGC 2 cut(s) 41, 1088
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 9 cut(s) 101, 152, 215, 253, 311, 452, 458, 588, 622
HpaII CCGG 7 cut(s) 83, 224, 437, 548, 886, 939, 992
HphI GGTGA 7 cut(s) 238, 362, 670, 755, 785, 1405, 1501
Hpy166II GTNNAC 2 cut(s) 378, 1356
Hpy188III TCNNGA 9 cut(s) 332, 637, 712, 976, 1055, 1132, 1211, 1534, 1582
Hpy8I GTNNAC 2 cut(s) 378, 1356
Hpy99I CGWCG 2 cut(s) 11, 722
HpyAV CCTTC 5 cut(s) 496, 655, 751, 904, 994
HpyCH4III ACNGT 5 cut(s) 840, 1235, 1256, 1306, 1330
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 176, 1106, 1263, 1316, 1356
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 197, 200, 203, 557, 560, 1172, 1181
HpyF3I CTNAG 9 cut(s) 69, 105, 156, 219, 307, 638, 996, 1212, 1407
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 476, 776, 1120, 1220
HspAI GCGC 2 cut(s) 41, 1088
KroI GCCGGC 1 cut(s) 547
KroNI GCCGGC 1 cut(s) 549
Ksp22I TGATCA 1 cut(s) 1119
Kzo9I GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
LguI GCTCTTC 3 cut(s) 333, 483, 1035
LmnI GCTCC 4 cut(s) 431, 1044, 1369, 1377
Lsp1109I GCAGC 2 cut(s) 355, 505
LweI GCATC 2 cut(s) 655, 666
MaeI CTAG 2 cut(s) 38, 1167
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 8 cut(s) 145, 287, 791, 803, 1256, 1300, 1493, 1507
MalI GATC 9 cut(s) 262, 303, 716, 738, 972, 1121, 1226, 1287, 1586
MboI GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
MboII GAAGA 9 cut(s) 122, 176, 245, 320, 500, 587, 617, 746, 1022
MflI RGATCY 2 cut(s) 736, 1285
MhlI GDGCHC 5 cut(s) 436, 1358, 1374, 1419, 1472
MlsI TGGCCA 1 cut(s) 1016
MluCI AATT 5 cut(s) 979, 1048, 1058, 1271, 1335
MluNI TGGCCA 1 cut(s) 1016
MlyI GAGTC 4 cut(s) 110, 161, 224, 597
MmeI TCCRAC 1 cut(s) 1363
Mox20I TGGCCA 1 cut(s) 1016
MroNI GCCGGC 1 cut(s) 547
MroXI GAANNNNTTC 2 cut(s) 707, 851
MscI TGGCCA 1 cut(s) 1016
MslI CAYNNNNRTG 2 cut(s) 1361, 1463
Msp20I TGGCCA 1 cut(s) 1016
MspI CCGG 7 cut(s) 83, 224, 437, 548, 886, 939, 992
MspR9I CCNGG 6 cut(s) 353, 429, 939, 987, 992, 1043
Mva1269I GAATGC 1 cut(s) 1106
MvaI CCWGG 4 cut(s) 353, 429, 987, 1043
MwoI GCNNNNNNNGC 8 cut(s) 52, 197, 200, 203, 557, 560, 1172, 1181
NaeI GCCGGC 1 cut(s) 549
NciI CCSGG 2 cut(s) 939, 992
NdeII GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
NgoMIV GCCGGC 1 cut(s) 547
NheI GCTAGC 1 cut(s) 1166
NlaIII CATG 4 cut(s) 476, 776, 1120, 1220
NlaIV GGNNCC 2 cut(s) 546, 1287
NmuCI GTSAC 3 cut(s) 145, 791, 1256
NspI RCATGY 1 cut(s) 1220
OliI CACNNNNGTG 1 cut(s) 1361
PciSI GCTCTTC 3 cut(s) 333, 483, 1035
PcsI WCGNNNNNNNCGW 4 cut(s) 297, 612, 1142, 1593
PctI GAATGC 1 cut(s) 1106
PdiI GCCGGC 1 cut(s) 549
PdmI GAANNNNTTC 2 cut(s) 707, 851
PfeI GAWTC 5 cut(s) 253, 311, 452, 458, 622
PflFI GACNNNGTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 1365
PfoI TCCNGGA 2 cut(s) 351, 1041
PinAI ACCGGT 1 cut(s) 436
PleI GAGTC 4 cut(s) 109, 160, 223, 596
PpsI GAGTC 4 cut(s) 109, 160, 223, 596
PsiI TTATAA 1 cut(s) 1340
Psp124BI GAGCTC 1 cut(s) 1374
Psp6I CCWGG 4 cut(s) 351, 427, 985, 1041
PspEI GGTNACC 1 cut(s) 791
PspFI CCCAGC 1 cut(s) 1171
PspGI CCWGG 4 cut(s) 351, 427, 985, 1041
PspN4I GGNNCC 2 cut(s) 546, 1287
PspPI GGNCC 2 cut(s) 873, 989
PstNI CAGNNNCTG 2 cut(s) 155, 499
PsuI RGATCY 2 cut(s) 736, 1285
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 7 cut(s) 180, 779, 842, 1202, 1232, 1449, 1574
RsaNI GTAC 7 cut(s) 179, 778, 841, 1201, 1231, 1448, 1573
RseI CAYNNNNRTG 2 cut(s) 1361, 1463
SacI GAGCTC 1 cut(s) 1374
SapI GCTCTTC 3 cut(s) 333, 483, 1035
Sau3AI GATC 9 cut(s) 260, 301, 714, 736, 970, 1119, 1224, 1285, 1584
Sau96I GGNCC 2 cut(s) 873, 989
SchI GAGTC 4 cut(s) 110, 161, 224, 597
ScrFI CCNGG 6 cut(s) 353, 429, 939, 987, 992, 1043
SduI GDGCHC 5 cut(s) 436, 1358, 1374, 1419, 1472
SfaNI GCATC 2 cut(s) 655, 666
SinI GGWCC 1 cut(s) 873
SmiMI CAYNNNNRTG 2 cut(s) 1361, 1463
SmlI CTYRAG 5 cut(s) 599, 629, 974, 1240, 1532
SmoI CTYRAG 5 cut(s) 599, 629, 974, 1240, 1532
Sse9I AATT 5 cut(s) 979, 1048, 1058, 1271, 1335
SspI AATATT 1 cut(s) 1527
SspMI CTAG 2 cut(s) 38, 1167
SstI GAGCTC 1 cut(s) 1374
StyD4I CCNGG 6 cut(s) 351, 427, 937, 985, 990, 1041
TaaI ACNGT 5 cut(s) 840, 1235, 1256, 1306, 1330
TaiI ACGT 1 cut(s) 294
TaqI TCGA 8 cut(s) 259, 486, 717, 1009, 1248, 1281, 1587, 1596
TaqII GACCGA 1 cut(s) 1490
TasI AATT 5 cut(s) 979, 1048, 1058, 1271, 1335
TatI WGTACW 2 cut(s) 1200, 1572
TfiI GAWTC 5 cut(s) 253, 311, 452, 458, 622
TscAI CASTG 3 cut(s) 213, 504, 1491
TseFI GTSAC 3 cut(s) 145, 791, 1256
TseI GCWGC 2 cut(s) 343, 493
Tsp45I GTSAC 3 cut(s) 145, 791, 1256
TspDTI ATGAA 3 cut(s) 489, 761, 1069
TspGWI ACGGA 3 cut(s) 1116, 1364, 1526
TspRI CASTG 3 cut(s) 213, 504, 1491
Tth111I GACNNNGTC 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 1365
VneI GTGCAC 1 cut(s) 1354
VpaK11BI GGWCC 1 cut(s) 873
XapI RAATTY 3 cut(s) 979, 1058, 1271
XceI RCATGY 1 cut(s) 1220
XmnI GAANNNNTTC 2 cut(s) 707, 851
XspI CTAG 2 cut(s) 38, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.