pycom08g18900

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012299
Physical Location & Seq
Forward (+)
18947235 .. 18948509
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18900.1

Sequence Viewer

Length: 954 bp
ATGATTTGGAGAAGGTGTTGTTTGTTCATGGGTACGATAGGGATGGTCACCCTGTGTGTTACAATGTGTTCGGGGAGTTTCAGAATAAAGAATTGTACCAGAAAACATTCTCGGACGAGGAAAAGCGAACCAAGTTTCTCCGGTGGCGGGTTCAGTTCTTGGAGAAGGGTATTCGAAAGCTTGATCTCACTCCTGCCGGTATTTCTAGTATTTTTCAGGTCAATCGATCTCAAGAATTCTCCAGGACCCGCAAAGAAGGAACTTCGATTGGCCACCAAACAGGCCCTTCACTTGCTCCAGGACAATTATCCCGAATTCGTAGCCAAACAGGTGTTACTTGATAAACTTGATAAACTTGATTGTTTGTTGATTCGGTATCCCTGCATTTTTGATATGTCTATGTCGAATGTGTTTATCAATGCTCCTTGGTGGTATCTTGCATTCTACACCATGATCAGTCCGTTCTTGACGCCAAGGACGAAAAGCAAGTTTGTTGTTGCAAGCCCAGCCAAAACCGCAGAAACCCTTTTCAAGTACATCTCTCCTGAGCATGTTCCGATTCAGTATGGTGGCTTGAGTGTCGATTACTGTGACTGCAACCCCGAGTTTACCATTGCAGATCCAGTTGCCGATGTTACAATTAAACCTGCAACAAAACAAACTGTGGAAATCATAATATATGAGAAGTGCACCATTGTGTGGGAGCTCCGTGTGGTCGGATGGGAGCTGAGCTATGGGGCTGAGTTTGTGCCCGAGGTGGAAAATGGATACACAATCATCATACAGAAAGCCACAAAGATGAGCCCAACCGATGAACCAGTGGTGAGTAACAGCTTCAAAGTTGGCGAACTGGGTAAAATACTACTTAAGATTGGCAACCCAACCTCGAAAAAGAAAAGGCTTTTCTGTACAGGTTCAAGATCGAACCCCTCGATTGCTCAGGAATTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

318

Amino Acids

35.93

Weight (kDa)

9.22

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 137 - 191 6e-13 CRAL/TRIO domain
GOLD_PATL1_C PF25099 215 - 299 2.6e-36 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72160
fragaria_vesca FvH4_5g31710 FvH4_5g31710
malus_domestica MD08G1218000.v1.1 MD15G1405900.v1.1
prunus_persica Prupe.1G555300_v2.0.a1
pyrus_communis pycom08g18900 pycom15g36270
rosa_chinensis RchiOBHm_Chr7g0227591
rosa_laevigata RLG00000001634
rosa_multiflora Rmu_sc0001772.1_g000008
rosa_roxburghii Rroxscaffold_3G00232020
rosa_rugosa Rorug07G0242000 Rorug07G0242100
rosa_samantha Rh7AG395500 Rh7BG377300 Rh7CG414200 Rh7DG391300
rosa_wichuraiana Rw7G032890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 655
AccB7I CCANNNNNTGG 1 cut(s) 699
AciI CCGC 3 cut(s) 147, 249, 516
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 3 cut(s) 235, 314, 944
AcyI GRCGYC 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 54
AfaI GTAC 4 cut(s) 34, 97, 536, 910
AfiI CCNNNNNNNGG 2 cut(s) 147, 699
AflII CTTAAG 1 cut(s) 866
AgsI TTSAA 3 cut(s) 532, 838, 918
AjnI CCWGG 2 cut(s) 241, 297
AleI CACNNNNGTG 1 cut(s) 695
AluBI AGCT 5 cut(s) 180, 706, 727, 732, 834
AluI AGCT 5 cut(s) 180, 706, 727, 732, 834
Alw21I GWGCWC 2 cut(s) 692, 708
Alw44I GTGCAC 1 cut(s) 688
AlwI GGATC 1 cut(s) 614
Ama87I CYCGRG 2 cut(s) 602, 752
AoxI GGCC 2 cut(s) 270, 282
ApaLI GTGCAC 1 cut(s) 688
ApoI RAATTY 3 cut(s) 235, 314, 944
Asp700I GAANNNNTTC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 245, 283
AsuHPI GGTGA 2 cut(s) 40, 835
AsuII TTCGAA 1 cut(s) 174
AvaI CYCGRG 2 cut(s) 602, 752
AvaII GGWCC 1 cut(s) 245
BaeGI GKGCMC 2 cut(s) 692, 753
BalI TGGCCA 1 cut(s) 272
BanII GRGCYC 2 cut(s) 708, 806
Bbv12I GWGCWC 2 cut(s) 692, 708
BccI CCATC 2 cut(s) 37, 714
BciT130I CCWGG 2 cut(s) 243, 299
BciVI GTATCC 2 cut(s) 387, 761
BclI TGATCA 1 cut(s) 453
BfaI CTAG 1 cut(s) 206
BfrI CTTAAG 1 cut(s) 866
BfuAI ACCTGC 1 cut(s) 655
BfuI GTATCC 2 cut(s) 387, 761
BlpI GCTNAGC 1 cut(s) 728
Bme1390I CCNGG 2 cut(s) 243, 299
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 2 cut(s) 602, 752
BmgT120I GGNCC 2 cut(s) 245, 283
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 243, 299
BmrI ACTGGG 1 cut(s) 860
BmuI ACTGGG 1 cut(s) 860
BpmI CTGGAG 2 cut(s) 225, 281
Bpu10I CCTNAGC 2 cut(s) 546, 939
Bpu1102I GCTNAGC 1 cut(s) 728
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 215, 595
Bsa29I ATCGAT 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 470
BsaJI CCNNGG 3 cut(s) 425, 473, 753
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 699
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 3 cut(s) 623, 818, 855
Bse3DI GCAATG 1 cut(s) 612
BseBI CCWGG 2 cut(s) 243, 299
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 425, 473, 753
BseGI GGATG 2 cut(s) 48, 725
BseLI CCNNNNNNNGG 2 cut(s) 147, 699
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 4 cut(s) 537, 719, 732, 953
BseNI ACTGG 3 cut(s) 623, 818, 855
BseSI GKGCMC 2 cut(s) 692, 753
BseYI CCCAGC 1 cut(s) 505
BshFI GGCC 2 cut(s) 272, 284
BshVI ATCGAT 1 cut(s) 225
BsiHKAI GWGCWC 2 cut(s) 692, 708
BsiHKCI CYCGRG 2 cut(s) 602, 752
BsiSI CCGG 2 cut(s) 141, 197
BslI CCNNNNNNNGG 2 cut(s) 147, 699
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 2 cut(s) 272, 284
BsoBI CYCGRG 2 cut(s) 602, 752
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 4 cut(s) 692, 708, 753, 806
Bsp1407I TGTACA 1 cut(s) 908
Bsp143I GATC 5 cut(s) 183, 226, 453, 619, 920
Bsp1720I GCTNAGC 1 cut(s) 728
BspACI CCGC 3 cut(s) 147, 249, 516
BspANI GGCC 2 cut(s) 272, 284
BspCNI CTCAG 4 cut(s) 538, 720, 733, 952
BspDI ATCGAT 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 1 cut(s) 614
BspT104I TTCGAA 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 866
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 908
BsrI ACTGG 3 cut(s) 623, 818, 855
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 3 cut(s) 425, 473, 753
BssMI GATC 5 cut(s) 183, 226, 453, 619, 920
BssNI GRCGYC 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 425, 473
Bst2UI CCWGG 2 cut(s) 243, 299
Bst4CI ACNGT 2 cut(s) 590, 664
BstACI GRCGYC 1 cut(s) 470
BstAFI CTTAAG 1 cut(s) 866
BstAUI TGTACA 1 cut(s) 908
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 4 cut(s) 546, 728, 741, 939
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 2 cut(s) 48, 725
BstKTI GATC 5 cut(s) 186, 229, 456, 622, 923
BstMBI GATC 5 cut(s) 183, 226, 453, 619, 920
BstMWI GCNNNNNNNGC 2 cut(s) 506, 515
BstNI CCWGG 2 cut(s) 243, 299
BstNSI RCATGY 1 cut(s) 554
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 241, 297
BstSLI GKGCMC 2 cut(s) 692, 753
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
Bsu15I ATCGAT 1 cut(s) 225
BsuI GTATCC 2 cut(s) 387, 761
BsuRI GGCC 2 cut(s) 272, 284
BsuTUI ATCGAT 1 cut(s) 225
BtsCI GGATG 2 cut(s) 48, 725
BtsIMutI CAGTG 1 cut(s) 825
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 245, 283
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 1 cut(s) 478
Csp6I GTAC 4 cut(s) 33, 96, 535, 909
CviAII CATG 3 cut(s) 28, 451, 551
CviQI GTAC 4 cut(s) 33, 96, 535, 909
DdeI CTNAG 4 cut(s) 546, 728, 741, 939
DpnI GATC 5 cut(s) 185, 228, 455, 621, 922
DpnII GATC 5 cut(s) 183, 226, 453, 619, 920
DraI TTTAAA 1 cut(s) 949
DraIII CACNNNGTG 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 2 cut(s) 425, 473
Eco24I GRGCYC 2 cut(s) 708, 806
Eco47I GGWCC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 602, 752
Eco91I GGTNACC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 706
EcoO109I RGGNCCY 2 cut(s) 245, 283
EcoO65I GGTNACC 1 cut(s) 46
EcoRI GAATTC 2 cut(s) 235, 314
EcoRII CCWGG 2 cut(s) 241, 297
EcoT14I CCWWGG 2 cut(s) 425, 473
EcoT38I GRGCYC 2 cut(s) 708, 806
ErhI CCWWGG 2 cut(s) 425, 473
FaeI CATG 3 cut(s) 31, 454, 554
FatI CATG 3 cut(s) 27, 450, 550
FauI CCCGC 2 cut(s) 140, 256
FbaI TGATCA 1 cut(s) 453
FokI GGATG 2 cut(s) 55, 732
FriOI GRGCYC 2 cut(s) 708, 806
FspBI CTAG 1 cut(s) 206
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 2 cut(s) 225, 281
HaeIII GGCC 2 cut(s) 272, 284
HapII CCGG 2 cut(s) 141, 197
HgaI GACGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 470
Hin1II CATG 3 cut(s) 31, 454, 554
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 2 cut(s) 370, 559
HpaII CCGG 2 cut(s) 141, 197
HphI GGTGA 2 cut(s) 40, 835
Hpy166II GTNNAC 2 cut(s) 609, 690
Hpy188I TCNGA 4 cut(s) 83, 114, 558, 719
Hpy188III TCNNGA 6 cut(s) 232, 311, 466, 545, 918, 941
Hpy8I GTNNAC 2 cut(s) 609, 690
HpyAV CCTTC 4 cut(s) 6, 159, 250, 296
HpyCH4III ACNGT 2 cut(s) 590, 664
HpyCH4V TGCA 7 cut(s) 384, 440, 500, 597, 617, 650, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 515
HpyF3I CTNAG 4 cut(s) 546, 728, 741, 939
Hsp92I GRCGYC 1 cut(s) 470
Hsp92II CATG 3 cut(s) 31, 454, 554
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 5 cut(s) 183, 226, 453, 619, 920
LmnI GCTCC 5 cut(s) 300, 427, 703, 711, 724
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 6 cut(s) 46, 58, 333, 590, 634, 827
MalI GATC 5 cut(s) 185, 228, 455, 621, 922
MboI GATC 5 cut(s) 183, 226, 453, 619, 920
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 4 cut(s) 692, 708, 753, 806
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 6 cut(s) 91, 235, 304, 314, 639, 944
MluNI TGGCCA 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 697
MnlI CCTC 4 cut(s) 111, 748, 895, 940
Mox20I TGGCCA 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 106
MscI TGGCCA 1 cut(s) 272
MseI TTAA 3 cut(s) 642, 867, 948
MslI CAYNNNNRTG 2 cut(s) 695, 797
Msp20I TGGCCA 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 2 cut(s) 141, 197
MspR9I CCNGG 2 cut(s) 243, 299
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 2 cut(s) 243, 299
MwoI GCNNNNNNNGC 2 cut(s) 506, 515
NdeII GATC 5 cut(s) 183, 226, 453, 619, 920
NlaIII CATG 3 cut(s) 31, 454, 554
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 46, 590
NspI RCATGY 1 cut(s) 554
NspV TTCGAA 1 cut(s) 174
OliI CACNNNNGTG 1 cut(s) 695
PcsI WCGNNNNNNNCGW 2 cut(s) 476, 929
PctI GAATGC 1 cut(s) 440
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 370, 559
PflMI CCANNNNNTGG 1 cut(s) 699
PfoI TCCNGGA 2 cut(s) 241, 297
PpuMI RGGWCCY 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 241, 297
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 2 cut(s) 241, 297
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 2 cut(s) 245, 283
PspPPI RGGWCCY 1 cut(s) 245
PsuI RGATCY 1 cut(s) 619
RsaI GTAC 4 cut(s) 34, 97, 536, 910
RsaNI GTAC 4 cut(s) 33, 96, 535, 909
RseI CAYNNNNRTG 2 cut(s) 695, 797
SacI GAGCTC 1 cut(s) 708
SaqAI TTAA 3 cut(s) 642, 867, 948
Sau3AI GATC 5 cut(s) 183, 226, 453, 619, 920
Sau96I GGNCC 2 cut(s) 245, 283
ScrFI CCNGG 2 cut(s) 243, 299
SduI GDGCHC 4 cut(s) 692, 708, 753, 806
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 245
SmiI ATTTAAAT 1 cut(s) 949
SmiMI CAYNNNNRTG 2 cut(s) 695, 797
SmlI CTYRAG 3 cut(s) 230, 574, 866
SmoI CTYRAG 3 cut(s) 230, 574, 866
Sse9I AATT 6 cut(s) 91, 235, 304, 314, 639, 944
SsiI CCGC 3 cut(s) 147, 249, 516
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 2 cut(s) 241, 297
StyI CCWWGG 2 cut(s) 425, 473
SwaI ATTTAAAT 1 cut(s) 949
TaaI ACNGT 2 cut(s) 590, 664
TaqI TCGA 8 cut(s) 174, 225, 265, 404, 582, 887, 923, 932
TasI AATT 6 cut(s) 91, 235, 304, 314, 639, 944
TatI WGTACW 2 cut(s) 534, 908
TfiI GAWTC 2 cut(s) 370, 559
Tru1I TTAA 3 cut(s) 642, 867, 948
Tru9I TTAA 3 cut(s) 642, 867, 948
TscAI CASTG 1 cut(s) 825
TseFI GTSAC 2 cut(s) 46, 590
Tsp45I GTSAC 2 cut(s) 46, 590
TspDTI ATGAA 2 cut(s) 16, 828
TspGWI ACGGA 2 cut(s) 450, 698
TspRI CASTG 1 cut(s) 825
Van91I CCANNNNNTGG 1 cut(s) 699
Vha464I CTTAAG 1 cut(s) 866
VneI GTGCAC 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 3 cut(s) 235, 314, 944
XceI RCATGY 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.