MD15G1408300.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
50835464 .. 50837571
2108 bp
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UTR
Exon/CDS
Intron
MD15G1408300.v1.1.491

Sequence Viewer

Length: 363 bp
ATGATGACCAAACTCTCCATGTCTTGCTCTTGCAACATTCCTCCACCTGCACTTCCACCAATTAGTCCTCACCAGCTTGCTCCAATCCTACTGAAAACAAGCATACAGCACAGGCCCAGGGTAGTTGCAGTTTTCGCTGCAAAATCTGGAGGATTTCCACTCAACTCGTTCTTGAAAAAGTGTGAAGGCTGTGGAGGTAAAGGTGCAATTGAATGCCAGGGATGCAAGGGGACGGGAAGGAATAAGAAGAATGGAAATATTTTTGAGCGATGGAAGTGTTTTGATTGCCAAGGATTCGGAATGAAGGGTTGCCCCAGCTGTGGACAAGGAGGACTAACCCCAGAACAAAGAGGAGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.81

Weight (kDa)

9.47

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 2 cut(s) 175, 212
AjnI CCWGG 2 cut(s) 116, 216
AluBI AGCT 2 cut(s) 76, 318
AluI AGCT 2 cut(s) 76, 318
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 62
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 118, 218
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 118, 218
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 2 cut(s) 118, 218
BmsI GCATC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 4 cut(s) 116, 117, 217, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 118, 218
BseDI CCNNGG 4 cut(s) 116, 117, 217, 289
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 115
BspANI GGCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 55
BssECI CCNNGG 4 cut(s) 116, 117, 217, 289
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 118, 218
BstC8I GCNNGC 1 cut(s) 78
BstF5I GGATG 1 cut(s) 227
BstMWI GCNNNNNNNGC 2 cut(s) 134, 222
BstNI CCWGG 2 cut(s) 118, 218
BstSCI CCNGG 2 cut(s) 116, 216
BstV1I GCAGC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 227
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 114
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 76, 115, 189, 318
CviKI_1 RGCY 4 cut(s) 76, 115, 189, 318
Eco130I CCWWGG 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 116, 216
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 104
FaqI GGGAC 1 cut(s) 244
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 115
Hin1II CATG 1 cut(s) 22
HinfI GANTC 1 cut(s) 294
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 2 cut(s) 147, 172
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 179, 231, 298
HpyCH4V TGCA 6 cut(s) 33, 50, 128, 140, 206, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 222
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 212
MboII GAAGA 1 cut(s) 259
MfeI CAATTG 1 cut(s) 207
MluCI AATT 2 cut(s) 60, 207
MnlI CCTC 6 cut(s) 51, 78, 143, 188, 323, 344
MspA1I CMGCKG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 118, 218
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 2 cut(s) 118, 218
MwoI GCNNNNNNNGC 2 cut(s) 134, 222
NlaIII CATG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 55
PasI CCCWGGG 1 cut(s) 117
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 294
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 116, 216
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 116, 216
PspPI GGNCC 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 318
SatI GCNGC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 118, 218
SetI ASST 5 cut(s) 49, 78, 199, 205, 320
SfaNI GCATC 1 cut(s) 212
Sse9I AATT 2 cut(s) 60, 207
SspI AATATT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 116, 216
StyI CCWWGG 1 cut(s) 289
TasI AATT 2 cut(s) 60, 207
TfiI GAWTC 1 cut(s) 294
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.