Rmu_sc0012031.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012031.1
OG0009408
Physical Location & Seq
Forward (+)
67705 .. 69623
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012031.1_g000015.1.cds

Sequence Viewer

Length: 363 bp
atgtactctcacaaaggtttgacaactcctcctcatccttcaccggcagtgccgattattcctcggcctattccgacatccgtcagaacaaccacagaacagagccggattcgaagagcagctgcagtttttgctgcgaaatctggtggaggattttcactcaactcgatcttaaaaaggtgtgaaacctgcgaaggcaaaggtgcaattgactgtcagggttgcaagggtacaggaaggaataagaaaaatggaaatatttttgagcgttggaagtgtttcgattgccaaggatttgggatgaagggttgccccagctgtgggaaaggaggactaacaccagaacaaagaggagaaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.87

Weight (kDa)

9.77

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AfaI GTAC 2 cut(s) 5, 232
AfiI CCNNNNNNNGG 2 cut(s) 320, 321
AluBI AGCT 2 cut(s) 122, 318
AluI AGCT 2 cut(s) 122, 318
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 119, 122, 134
Asp700I GAANNNNTTC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 33
AsuII TTCGAA 1 cut(s) 112
BbvI GCAGC 3 cut(s) 109, 121, 131
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 3 cut(s) 120, 123, 135
BlsI GCNGC 3 cut(s) 121, 124, 136
BoxI GACNNNNGTC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 62, 289
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 321
Bse118I RCCGGY 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 62, 289
BseGI GGATG 3 cut(s) 34, 77, 306
BseLI CCNNNNNNNGG 2 cut(s) 320, 321
BseRI GAGGAG 2 cut(s) 18, 21
BseXI GCAGC 3 cut(s) 109, 121, 131
BseYI CCCAGC 1 cut(s) 314
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 2 cut(s) 44, 106
BslI CCNNNNNNNGG 2 cut(s) 320, 321
BsnI GGCC 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 168
BspANI GGCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 62, 289
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 112
BstF5I GGATG 3 cut(s) 34, 77, 306
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstPAI GACNNNNGTC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 109, 121, 131
BstXI CCANNNNNNTGG 1 cut(s) 296
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 3 cut(s) 34, 77, 306
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 43
Csp6I GTAC 2 cut(s) 4, 231
CviJI RGCY 4 cut(s) 67, 105, 122, 318
CviKI_1 RGCY 4 cut(s) 67, 105, 122, 318
CviQI GTAC 2 cut(s) 4, 231
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 120, 123, 135
FokI GGATG 3 cut(s) 21, 64, 313
Fsp4HI GCNGC 3 cut(s) 120, 123, 135
GluI GCNGC 3 cut(s) 120, 123, 135
GsaI CCCAGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 67
HapII CCGG 2 cut(s) 44, 106
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 44, 106
HphI GGTGA 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 75, 86
HpyAV CCTTC 4 cut(s) 48, 188, 231, 298
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 3 cut(s) 125, 206, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 57, 119, 129, 202, 203, 219, 328, 354
Lsp1109I GCAGC 3 cut(s) 109, 121, 131
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 126
MfeI CAATTG 1 cut(s) 207
MluCI AATT 1 cut(s) 207
MmeI TCCRAC 2 cut(s) 98, 251
MnlI CCTC 6 cut(s) 39, 42, 72, 143, 323, 344
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 122, 318
MspI CCGG 2 cut(s) 44, 106
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 168
NmeAIII GCCGAG 1 cut(s) 43
NspV TTCGAA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 121, 124, 136
PshAI GACNNNNGTC 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 314
PstI CTGCAG 1 cut(s) 127
PvuII CAGCTG 2 cut(s) 122, 318
RsaI GTAC 2 cut(s) 5, 232
RsaNI GTAC 2 cut(s) 4, 231
SapI GCTCTTC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 3 cut(s) 120, 123, 135
Sau3AI GATC 1 cut(s) 168
SetI ASST 6 cut(s) 19, 124, 182, 191, 205, 320
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 112
Sse9I AATT 1 cut(s) 207
SspI AATATT 1 cut(s) 259
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 3 cut(s) 112, 167, 282
TasI AATT 1 cut(s) 207
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 54
TseI GCWGC 3 cut(s) 119, 122, 134
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.