Rw0G011080

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00479
Physical Location & Seq
Forward (+)
50282 .. 51566
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011080.1

Sequence Viewer

Length: 333 bp
ATGTTGATGACCAAACTCTCCATGTACTCTCACAAAGGTTTGACAACTCCTCCTCATCCTTCACCGGCAGTGCCGATTATTCCTCGGCCTATTCCGACATCCGTCAGAACAACCGCAGAACAGAGCCGGATTCGAAGAGCAGCTGCAGTTTTTGCTGCGAAATCTGGCAAAGGTGCAATTGACTGTCAGGGTTGCAAGGGTACAGGAAGGAATAAGAAAAATGGAAATATTTTTGAGCGCTGGAAGTGTTTCGATTGCCAAGGATTTGGGATGAAGGGTTGCCCCAGCTGTGGGAAAGGAGGACTAACACCAGAACAAAGAGGAGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.85

Weight (kDa)

10.13

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AfaI GTAC 2 cut(s) 26, 202
AfeI AGCGCT 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 290, 291
AluBI AGCT 2 cut(s) 143, 288
AluI AGCT 2 cut(s) 143, 288
Aor51HI AGCGCT 1 cut(s) 239
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 140, 143, 155
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 54
AsuII TTCGAA 1 cut(s) 133
BbvI GCAGC 3 cut(s) 130, 142, 152
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 3 cut(s) 141, 144, 156
BlsI GCNGC 3 cut(s) 142, 145, 157
BoxI GACNNNNGTC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 83, 259
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 291
Bse118I RCCGGY 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 83, 259
BseGI GGATG 3 cut(s) 55, 98, 276
BseLI CCNNNNNNNGG 2 cut(s) 290, 291
BseRI GAGGAG 2 cut(s) 39, 42
BseXI GCAGC 3 cut(s) 130, 142, 152
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 65, 127
BslI CCNNNNNNNGG 2 cut(s) 290, 291
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 133
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 83, 259
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 133
BstF5I GGATG 3 cut(s) 55, 98, 276
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 130, 142, 152
BstXI CCANNNNNNTGG 1 cut(s) 266
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 3 cut(s) 55, 98, 276
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 2 cut(s) 25, 201
CviAII CATG 1 cut(s) 22
CviJI RGCY 4 cut(s) 88, 126, 143, 288
CviKI_1 RGCY 4 cut(s) 88, 126, 143, 288
CviQI GTAC 2 cut(s) 25, 201
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 25
FaiI YATR 1 cut(s) 23
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 141, 144, 156
FokI GGATG 3 cut(s) 42, 85, 283
Fsp4HI GCNGC 3 cut(s) 141, 144, 156
GlaI GCGC 1 cut(s) 239
GluI GCNGC 3 cut(s) 141, 144, 156
GsaI CCCAGC 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 65, 127
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 65, 127
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 96, 107
HpyAV CCTTC 3 cut(s) 69, 201, 268
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 146, 176, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 78, 140, 150, 173, 189, 226, 298, 324
Lsp1109I GCAGC 3 cut(s) 130, 142, 152
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 177
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 5 cut(s) 60, 63, 93, 293, 314
MroXI GAANNNNTTC 1 cut(s) 248
MspA1I CMGCKG 2 cut(s) 143, 288
MspI CCGG 2 cut(s) 65, 127
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 64
NspV TTCGAA 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 142, 145, 157
PshAI GACNNNNGTC 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 148
PvuII CAGCTG 2 cut(s) 143, 288
RsaI GTAC 2 cut(s) 26, 202
RsaNI GTAC 2 cut(s) 25, 201
SapI GCTCTTC 1 cut(s) 130
SatI GCNGC 3 cut(s) 141, 144, 156
SetI ASST 4 cut(s) 40, 145, 175, 290
SfcI CTRYAG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 133
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 114
SspI AATATT 1 cut(s) 229
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 133, 252
TasI AATT 1 cut(s) 177
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 1 cut(s) 75
TseI GCWGC 3 cut(s) 140, 143, 155
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.