Rh7AG400200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009408
Physical Location & Seq
Forward (+)
52645826 .. 52647742
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG400200.1

Sequence Viewer

Length: 300 bp
ATGTTGATGACCAAACTCTCCATGTACTCTCACAAAGGTTTGACAACTCCTCCTCATCCTTCACCGGCAGTGCCGATTATTCCTCGGCCTATTCCGACATCCGTCAGAACAACCACAGAACAGAGCCGGATTCGAAGAGCAGCTGCAGTTTTTGCTGCGAAATCTGGTGGAGGATTTTCACTCAACTCGATCTTAAAAAGGTGTGAAACCTGCGAAGGCAAAGGTGCAATTGACTGTCAGGGTTGCAAGGTATGCTTTCACGACTTCATTTCACTTTCACCCTTTACGTGTACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.67

Weight (kDa)

9.45

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AfaI GTAC 2 cut(s) 26, 292
AflIII ACRYGT 1 cut(s) 287
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 140, 143, 155
AsuHPI GGTGA 2 cut(s) 54, 270
AsuII TTCGAA 1 cut(s) 133
BbvI GCAGC 3 cut(s) 130, 142, 152
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 3 cut(s) 141, 144, 156
BlsI GCNGC 3 cut(s) 142, 145, 157
BoxI GACNNNNGTC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bse118I RCCGGY 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 55, 98
BseRI GAGGAG 2 cut(s) 39, 42
BseXI GCAGC 3 cut(s) 130, 142, 152
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 65, 127
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 148
BspMI ACCTGC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 130
BstAPI GCANNNNNTGC 2 cut(s) 152, 252
BstAUI TGTACA 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 133
BstF5I GGATG 2 cut(s) 55, 98
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 152, 252
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 130, 142, 152
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 55, 98
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 2 cut(s) 25, 291
CviAII CATG 1 cut(s) 22
CviJI RGCY 3 cut(s) 88, 126, 143
CviKI_1 RGCY 3 cut(s) 88, 126, 143
CviQI GTAC 2 cut(s) 25, 291
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
FaeI CATG 1 cut(s) 25
FaiI YATR 2 cut(s) 23, 253
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 141, 144, 156
FokI GGATG 2 cut(s) 42, 85
Fsp4HI GCNGC 3 cut(s) 141, 144, 156
GluI GCNGC 3 cut(s) 141, 144, 156
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 65, 127
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 65, 127
HphI GGTGA 2 cut(s) 54, 270
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 96, 107
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 69, 209
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 146, 227, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 252
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 189
LguI GCTCTTC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 78, 140, 150, 223, 224
Lsp1109I GCAGC 3 cut(s) 130, 142, 152
MaeII ACGT 1 cut(s) 287
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 228
MluCI AATT 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 4 cut(s) 60, 63, 93, 164
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 65, 127
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 152, 252
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 64
NspV TTCGAA 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 142, 145, 157
Ppu21I YACGTR 1 cut(s) 288
PshAI GACNNNNGTC 1 cut(s) 101
PstI CTGCAG 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 2 cut(s) 26, 292
RsaNI GTAC 2 cut(s) 25, 291
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 141, 144, 156
Sau3AI GATC 1 cut(s) 189
SetI ASST 7 cut(s) 40, 145, 203, 212, 226, 252, 290
SfcI CTRYAG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 133
Sse9I AATT 1 cut(s) 228
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 290
TaqI TCGA 2 cut(s) 133, 188
TasI AATT 1 cut(s) 228
TatI WGTACW 2 cut(s) 24, 290
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 75
TseI GCWGC 3 cut(s) 140, 143, 155
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.