Rmu_sc0001488.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001488.1
OG0009408
Physical Location & Seq
Forward (+)
59571 .. 60048
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001488.1_g000013.1.cds

Sequence Viewer

Length: 348 bp
atgccggagctggatgagcgaagaggaaggttgagtacccagaggagatttgggtgtccaaatcaagtctgggtattggcctgtcggcgcgtgagtttaactcggggcgtcgtcggacgtcatggatgtcaggctcgactcgacggaggccgtgagcacgatggtgatggagaaatatgcgatgggaaatccgagaggcgtggtgggttcaaaaagacacggttgaggttgattttgaacaagaacagagaaggcaaatgcgttgttgaggttgttccctcagatgatcgaggctttttgggtttgggggtgaatgtggtcaacaacaacggaaggaggaagaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.91

Weight (kDa)

10.5

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 121
AccII CGCG 1 cut(s) 90
AcyI GRCGYC 2 cut(s) 108, 118
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 2 cut(s) 211, 238
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 78, 148
AspLEI GCGC 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 176, 322
AvaI CYCGRG 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
Bbv12I GWGCWC 1 cut(s) 159
BccI CCATC 3 cut(s) 155, 161, 176
BceAI ACGGC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BsaHI GRCGYC 2 cut(s) 108, 118
BseGI GGATG 2 cut(s) 19, 131
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 80, 150
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 5
BsnI GGCC 2 cut(s) 80, 150
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 286
BspANI GGCC 2 cut(s) 80, 150
BspCNI CTCAG 1 cut(s) 293
BspFNI CGCG 1 cut(s) 90
BssMI GATC 1 cut(s) 286
BssNI GRCGYC 2 cut(s) 108, 118
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 2 cut(s) 108, 118
BstDEI CTNAG 1 cut(s) 280
BstF5I GGATG 2 cut(s) 19, 131
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstUI CGCG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 80, 150
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 19, 131
CfoI GCGC 1 cut(s) 90
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 122
CviJI RGCY 5 cut(s) 10, 80, 134, 150, 294
CviKI_1 RGCY 5 cut(s) 10, 80, 134, 150, 294
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 280
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 102
FaeI CATG 1 cut(s) 125
FaiI YATR 2 cut(s) 123, 178
FatI CATG 1 cut(s) 121
FokI GGATG 2 cut(s) 26, 138
GlaI GCGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 80, 150
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 2 cut(s) 108, 118
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 176, 322
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 116, 193, 283
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 3 cut(s) 113, 116, 146
HpyAV CCTTC 3 cut(s) 21, 245, 327
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 280
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 2 cut(s) 108, 118
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 5 cut(s) 18, 53, 55, 94, 116
MaeII ACGT 1 cut(s) 118
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 343
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 9 cut(s) 17, 36, 140, 189, 219, 262, 284, 289, 330
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 1 cut(s) 5
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 1 cut(s) 286
NlaIII CATG 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 162
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 1 cut(s) 286
SchI GAGTC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 159
SetI ASST 5 cut(s) 12, 32, 121, 230, 273
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 1 cut(s) 343
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 136, 141, 289
TasI AATT 1 cut(s) 343
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 159, 345
XcmI CCANNNNNNNNNTGG 2 cut(s) 47, 66
ZraI GACGTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.