Rh7BG381500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009408
Physical Location & Seq
Forward (+)
41238800 .. 41241575
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG381500.1

Sequence Viewer

Length: 384 bp
ATGTTGATGACCAAACTCTCCATGTACTCTCACAAAGGTTTGACAACTCCTCCTCATCCTTCACCGGCAGTGCCGATTATTCCTCGGCCTATTCCGACATCTGTCAGAACAACCACAGAACAGAGCCGGATTCGAAGAGCAGCTGCAGTTTTTGCTGCGAAATCTGGTGGAGGATTTTCACTCAACTCGATCTTAAAAAGGTGTGAAACCTGCGAAGGCAAAGGTGCAATTGACTGTCAGGGTTGCAAGGGTACGGGAAGGAATAAGAAAAATGGAAATATTTTTGAGCGTTGGAAGTGTTTCGATTGCCAAGGATTTGGGATGAAGGGTTGCCCCAGCTGTGGGAAAGGAGGACTAACACCAGAACAAAGAGGAGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.67

Weight (kDa)

9.84

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AfaI GTAC 2 cut(s) 26, 253
AfiI CCNNNNNNNGG 2 cut(s) 341, 342
AluBI AGCT 2 cut(s) 143, 339
AluI AGCT 2 cut(s) 143, 339
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 140, 143, 155
Asp700I GAANNNNTTC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 54
AsuII TTCGAA 1 cut(s) 133
BbvI GCAGC 3 cut(s) 130, 142, 152
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 3 cut(s) 141, 144, 156
BlsI GCNGC 3 cut(s) 142, 145, 157
BoxI GACNNNNGTC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 83, 310
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 342
Bse118I RCCGGY 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 83, 310
BseGI GGATG 2 cut(s) 55, 327
BseLI CCNNNNNNNGG 2 cut(s) 341, 342
BseRI GAGGAG 2 cut(s) 39, 42
BseXI GCAGC 3 cut(s) 130, 142, 152
BseYI CCCAGC 1 cut(s) 335
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 65, 127
BslI CCNNNNNNNGG 2 cut(s) 341, 342
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 148
BspMI ACCTGC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 83, 310
BssMI GATC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 133
BstF5I GGATG 2 cut(s) 55, 327
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 130, 142, 152
BstXI CCANNNNNNTGG 1 cut(s) 317
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 55, 327
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 2 cut(s) 25, 252
CviAII CATG 1 cut(s) 22
CviJI RGCY 4 cut(s) 88, 126, 143, 339
CviKI_1 RGCY 4 cut(s) 88, 126, 143, 339
CviQI GTAC 2 cut(s) 25, 252
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 25
FaiI YATR 1 cut(s) 23
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 141, 144, 156
FokI GGATG 2 cut(s) 42, 334
Fsp4HI GCNGC 3 cut(s) 141, 144, 156
GluI GCNGC 3 cut(s) 141, 144, 156
GsaI CCCAGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 65, 127
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 65, 127
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 96, 107
HpyAV CCTTC 4 cut(s) 69, 209, 252, 319
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 146, 227, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 189
LguI GCTCTTC 1 cut(s) 130
LpnPI CCDG 7 cut(s) 78, 140, 150, 223, 224, 349, 375
Lsp1109I GCAGC 3 cut(s) 130, 142, 152
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 228
MluCI AATT 1 cut(s) 228
MmeI TCCRAC 2 cut(s) 119, 272
MnlI CCTC 6 cut(s) 60, 63, 93, 164, 344, 365
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 2 cut(s) 143, 339
MspI CCGG 2 cut(s) 65, 127
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 64
NspV TTCGAA 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 142, 145, 157
PshAI GACNNNNGTC 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 148
PvuII CAGCTG 2 cut(s) 143, 339
RsaI GTAC 2 cut(s) 26, 253
RsaNI GTAC 2 cut(s) 25, 252
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 141, 144, 156
Sau3AI GATC 1 cut(s) 189
SetI ASST 6 cut(s) 40, 145, 203, 212, 226, 341
SfcI CTRYAG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 133
Sse9I AATT 1 cut(s) 228
SspI AATATT 1 cut(s) 280
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 133, 188, 303
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 75
TseI GCWGC 3 cut(s) 140, 143, 155
TspDTI ATGAA 1 cut(s) 338
TspRI CASTG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.