Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009408

Physical Location & Seq

Genomic Coordinates Reverse (-)

17800167 .. 17802354

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTGATGACCAAACTCTCCATGTACTCTCACAAAGGTTTGACAACTCCTCCTCCTCCTTCACCAGCAGTGCCGATTATTCCTCGGCCTATTCCGACATCCGTCAGAACAACCACAGAACAGAGCCGGATTCGAAGAGCAGCTGCAGTTTTTGCTGCGAAATCTGGTGGAGGATTTTCACTCAACTCGATCTTAAAAAGGTGTGAAACCTGCCAAGGCAAAGGTGCAATTGACTGTCAGGGTTGCAAGTGTGGGAAAGAACCACAAAGCTCGGAGAGCAAGAAAAAGATGAGATCAGTACCCGACCTGAGTCTGTCCGAATTAACTTGGTTTGGCTCCAAAAACAAACCTTCTGCAAGCTTCATGATGTTCGCCTTGTGCACGGCCGTGGCTTTCTTTCTGTTATTCAAAAAGACACAGTTGAGGTTGATTTTGAACAAGAACAGAGAAGGCAAATGCACCGTTGAGGTTGTTCCCTCAGATGATCGAGACTTTTTGGGTTTGGGGGTGAATGTGGTCAACAACGGAAGGAGGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.68

Weight (kDa)

10.04

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22630
fragaria_vesca	FvH4_5g32101
malus_domestica	MD15G1408300.v1.1
prunus_persica	Prupe.1G552800_v2.0.a1 Prupe.1G552800_v2.0.a1
pyrus_communis	pycom15g36460
rosa_chinensis	RchiOBHm_Chr7g0228151
rosa_laevigata	RLG00000001584
rosa_multiflora	Rmu_sc0001488.1_g000013 Rmu_sc0012031.1_g000015 Rmu_sc0021525.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231360
rosa_rugosa	Rorug07G0245900 Rorug07G0245900 Rorug07G0246000 Rorug07G0246100
rosa_samantha	Rh7AG400200 Rh7BG381500 Rh7CG418400 Rh7DG396300
rosa_wichuraiana	Rw0G005110 Rw0G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	384
AfaI	GTAC	2 cut(s)	26, 300
AgsI	TTSAA	2 cut(s)	409, 436
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	3 cut(s)	143, 270, 360
AluI	AGCT	3 cut(s)	143, 270, 360
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	483
Alw44I	GTGCAC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	86, 384
ApaLI	GTGCAC	1 cut(s)	379
ApeKI	GCWGC	3 cut(s)	140, 143, 155
AsuHPI	GGTGA	2 cut(s)	54, 520
AsuII	TTCGAA	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	130, 142, 152
BceAI	ACGGC	2 cut(s)	371, 399
BcoDI	GTCTC	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	3 cut(s)	141, 144, 156
BlsI	GCNGC	3 cut(s)	142, 145, 157
BmiI	GGNNCC	1 cut(s)	337
BoxI	GACNNNNGTC	2 cut(s)	101, 309
Bpu14I	TTCGAA	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	83, 214, 387
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 37, 64, 67
BseDI	CCNNGG	3 cut(s)	83, 214, 387
BseGI	GGATG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	299, 492
BseRI	GAGGAG	3 cut(s)	39, 42, 45
BseSI	GKGCMC	1 cut(s)	383
BseX3I	CGGCCG	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	130, 142, 152
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	88, 386
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	88, 386
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	189, 293, 484
BspANI	GGCC	2 cut(s)	88, 386
BspCNI	CTCAG	2 cut(s)	300, 491
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	130
BspT104I	TTCGAA	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	83, 214, 387
BssMI	GATC	3 cut(s)	189, 293, 484
BssT1I	CCWWGG	1 cut(s)	214
Bst4CI	ACNGT	3 cut(s)	236, 420, 463
Bst6I	CTCTTC	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	308, 478
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	192, 296, 487
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	3 cut(s)	189, 293, 484
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 276
BstPAI	GACNNNNGTC	2 cut(s)	101, 309
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	3 cut(s)	130, 142, 152
BstZI	CGGCCG	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	88, 386
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	25, 299
CviAII	CATG	2 cut(s)	22, 364
CviJI	RGCY	8 cut(s)	88, 126, 143, 270, 336, 360, 386, 392
CviKI_1	RGCY	8 cut(s)	88, 126, 143, 270, 336, 360, 386, 392
CviQI	GTAC	2 cut(s)	25, 299
DdeI	CTNAG	2 cut(s)	308, 478
DpnI	GATC	3 cut(s)	191, 295, 486
DpnII	GATC	3 cut(s)	189, 293, 484
EaeI	YGGCCR	1 cut(s)	384
EagI	CGGCCG	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	214
Eco52I	CGGCCG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	25, 367
FaiI	YATR	2 cut(s)	23, 365
FatI	CATG	2 cut(s)	21, 363
Fnu4HI	GCNGC	3 cut(s)	141, 144, 156
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	141, 144, 156
GluI	GCNGC	3 cut(s)	141, 144, 156
HaeIII	GGCC	2 cut(s)	88, 386
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	2 cut(s)	25, 367
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	130, 310
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	2 cut(s)	54, 520
Hpy166II	GTNNAC	2 cut(s)	381, 520
Hpy188I	TCNGA	5 cut(s)	96, 107, 274, 319, 481
Hpy188III	TCNNGA	2 cut(s)	364, 488
Hpy8I	GTNNAC	2 cut(s)	381, 520
HpyAV	CCTTC	4 cut(s)	69, 360, 443, 522
HpyCH4III	ACNGT	3 cut(s)	236, 420, 463
HpyCH4V	TGCA	6 cut(s)	146, 227, 246, 356, 381, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 276
HpyF3I	CTNAG	2 cut(s)	308, 478
Hsp92II	CATG	2 cut(s)	25, 367
Kzo9I	GATC	3 cut(s)	189, 293, 484
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	6 cut(s)	78, 140, 150, 223, 224, 320
Lsp1109I	GCAGC	3 cut(s)	130, 142, 152
MalI	GATC	3 cut(s)	191, 295, 486
MboI	GATC	3 cut(s)	189, 293, 484
MboII	GAAGA	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	3 cut(s)	228, 320, 538
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	9 cut(s)	60, 63, 66, 93, 164, 417, 460, 487, 525
MseI	TTAA	2 cut(s)	194, 323
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	152, 276
NdeII	GATC	3 cut(s)	189, 293, 484
NlaIII	CATG	2 cut(s)	25, 367
NlaIV	GGNNCC	1 cut(s)	337
NmeAIII	GCCGAG	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	386
PagI	TCATGA	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	142, 145, 157
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PshAI	GACNNNNGTC	2 cut(s)	101, 309
PspN4I	GGNNCC	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	26, 300
RsaNI	GTAC	2 cut(s)	25, 299
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	194, 323
SatI	GCNGC	3 cut(s)	141, 144, 156
Sau3AI	GATC	3 cut(s)	189, 293, 484
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	383
SfcI	CTRYAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	3 cut(s)	228, 320, 538
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	3 cut(s)	236, 420, 463
TaqI	TCGA	3 cut(s)	133, 188, 487
TasI	AATT	3 cut(s)	228, 320, 538
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	194, 323
Tru9I	TTAA	2 cut(s)	194, 323
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	3 cut(s)	140, 143, 155
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	2 cut(s)	91, 540
TspRI	CASTG	1 cut(s)	75
VneI	GTGCAC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.