Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003781

Physical Location & Seq

Genomic Coordinates Forward (+)

52155473 .. 52165958

Gene Structure 10486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1420100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

ATGGCGGTGGACAAAGACAAGCTTCAGGAAGACGCTGCCATTGCCCGCTTCTACAGGATTATTCTCAGTTGGGACTATTTCCGTCTCAGAAAAGAGGCAAACAAGCTGAAGGACAAGCAGCAGAAGAGTAAGGGGGGAGAGATAGATTATGAGGGTTTAGGAATTGCAAGAGTGAAAGACACCTACAAAGATGTGGATGACTATATCTCTACATACGAACCGCTTCTTTTCGAAGAAGTCAAAGCTCAGATTCTTCAGGAAAAAGACATGGATGAATTGGAAGACCCCAGGGAAAACTTGGTTGTCGAGTACACTGACGTGGACGGGTTTCACTTAGCAACCCTTACCCGCGACCAGGGTGACATGGAAGAGAGCAGATCAATAACGCAGAATGATCTTTTGCTTCTTTCCGGACAAAAGCTTCAATGGGTAACGGATGGTAAAGAGAAGTATATCCAACCTCCATCTGCCAAACATCCACGGGACTATGCTTTTGCATTGGTGGAAAGCCGCCAGGCGAGTTCTTTTAGGATTAGAATGTATTTGGGTGGAGAAGTCACAAATTTGGAGACAGATGCAGTTGAATGTCCTAGGCTGTTAAATGTGAAGTCTTTGGTGACTTCTACAGAACGACGGTTCTTTTACACTCTAAAGATTTGCAGTTTATCAACTATTGCTCGTGAATATGTAGCTCTACGGTCAATTGGTTCTCTCCCTTTTAAGGATATAATTCTTGGAGCTGCTGAAAAAAATATCAATTCGGAAGGCCAGGCCTGGAAAATTTCTGGACCTCTGCAGGAATATATAAAAGAAAATCTTAATGAATCTCAACAAAACGCCATACAGGCTGGTCTATCGCGTAAACCATTTGTCCTGATACAGGGTCCTCCAGGAACAGGAAAGACACAAACTATCCTTGGGCTTCTTAGTGCCATTTTGCATGCTACTCCAGCAAGAATGAACTCCAGGGGTGAGTCAACCATAAAGCGCCGGCCAAAGTTATCTAGAGAGGAGAAATTCAAACATTGGATAAAAGCGTCTCCATGGCTTAGTGGTAGAAATCCTAGGGAGCAAATAATGCCTGTGGATGGTGATGATGGTGTTTTTCCGACCACTGGAAATGAGTTGAAACCGGAAGTGGTCAATTCTAGTCGTAAATATCGTGTACGTGTCCTTGTGTGTGCTCCTTCAAACTCCGCACTTGATGAGATTGTTTTGCGTGTTCTAAACTATGGAGTGCGCGATGAAAGTGACCATTCGTATAACCCCAAAATTGTGCGGATTGGTCTTAAGGAACATCATTCTGTCCGTGCAGTCTCCATGGATGAACTGGTAGAACGGAAGAAAGGAAGTATAGGTGGTGGTAAAGGTAGAGAAGGTGCTGAAAGGTTTCGAGCAGAAATTTTGGAGGAGTCTGTAATTGTGTTTTCTACCCTTAGCTTTAGTGGTTCAAGTCTTTTCAGCAAATGGAATCGAGATTTTGATGTTGTTATAATAGATGAAGCTGCACAAGCTGTGGAACCAGCGACTCTTGTTCCATTGACAAATGGATGCAAACAAGTATTTCTGATCGGTGACCCGGTTCAACTTCCAGCTACTGTAATTTCAACTGTTGCTAATAAACTCGGGTATGGAACGAGTTTGTTTGAGAGATTTCAGAGAGCTGGCTATCCAGTGACCATGCTGAAGATGCAGTATCGAATGCATCCAGAGATTAGGAGCTTTCCTTCTGCAGAGTTTTACTCGGAGTCATTGGAGGATGGTCCTAATATTATAGAGCAGACACAACGTTCTTGGCATGACTATCGATGCTTTGGACCCTTCTGCTTTTTTGACATACATCAAGGGAAGGAATCCAAGCCCGAAGGAAGTGGTAGATCTGTTGTGAATGTTGCTGAGGTTGATTTTATCATGCTCTTGTATCATAATTTAGTGGATAAATATCCAGAGCTTAAATCAAGTCAGCGGTTCACGATTATATCCCCGTATCGTGGACAAGTAACTCTCTTCAAAGAACGTTTCAGAAGTACTTTCGGAGTGGAGTCTGACAAATTCGTGGATATTACTACTATTGATGGTTGCCAGGGACGTGAAAAGGATGTTGCAATATTTTCATGTGTCAGGACAAACGAGCATGGAAAAATTGGGTTTCTGTCTGATTTTCGGCGAATGAATGTTGCGATCACTAGAGCAAAATCTTCTGTCTTGGTAGTGGGATCTGCATCAACATTAAGGAAGCGCGATGAGCATTGGAATAACCTTATCGAAAGCGCTGAAAAGAGGGATTGTTTGCTTAAGGTCTCACAGCCATACACTTCATTTTTCAGTGATGAGAATCTGGAAACCATGGCTATCAAGAAAGAATTCTCATTGGAGGAGGTTGAGAATGATGAGGTGGATAACTATGCAGGTTCAAACAATTTTGGGGGTGCCGACCCGGCGGAGGGAGAGGAGAACGATTATGGAGACGGGGGTATGGACATGGATGACGGAGGCAACGGCGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007154 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009875 GO:0009987 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

837

Amino Acids

94.38

Weight (kDa)

5.53

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_11	PF13086	272 - 449	2.1e-26	AAA domain
AAA_11	PF13086	459 - 536	1.7e-28	AAA domain
AAA_12	PF13087	544 - 741	7.4e-63	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15570 AT4G15570 AT4G15570 AT4G15570
fragaria_vesca	FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281
malus_domestica	MD15G1420100.v1.1 MD15G1420400.v1.1
prunus_persica	Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1
pyrus_communis	pycom15g37290
rosa_chinensis	RchiOBHm_Chr4g0407481
rosa_laevigata	RLG00000008716
rosa_multiflora	Rmu_sc0004841.1_g000016
rosa_roxburghii	Rroxscaffold_5G00352130
rosa_rugosa	Rorug04G0080000
rosa_samantha	Rh4AG144700 Rh4BG142600 Rh4CG151400 Rh4DG138600
rosa_wichuraiana	Rw4G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1493
Acc36I	ACCTGC	1 cut(s)	2399
AccB1I	GGYRCC	1 cut(s)	2429
AccII	CGCG	4 cut(s)	351, 859, 1242, 2241
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	9 cut(s)	5, 46, 221, 349, 511, 1197, 1279, 1966, 2441
AclI	AACGTT	2 cut(s)	1789, 2017
AclWI	GGATC	1 cut(s)	2224
AcoI	YGGCCR	1 cut(s)	992
AcsI	RAATTY	6 cut(s)	562, 780, 1016, 1401, 2051, 2363
AcuI	CTGAAG	4 cut(s)	8, 128, 239, 1706
AfaI	GTAC	3 cut(s)	311, 1167, 2029
AfeI	AGCGCT	1 cut(s)	2272
AfiI	CCNNNNNNNGG	9 cut(s)	355, 721, 880, 896, 1088, 1115, 1991, 2443, 2444
AflII	CTTAAG	2 cut(s)	1289, 2294
AflIII	ACRYGT	1 cut(s)	1168
AjiI	CACGTC	2 cut(s)	319, 2090
AjnI	CCWGG	8 cut(s)	287, 354, 513, 768, 773, 889, 965, 2082
AleI	CACNNNNGTG	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	1186
Alw26I	GTCTC	6 cut(s)	89, 563, 1044, 1321, 2305, 2460
AlwI	GGATC	1 cut(s)	2224
AlwNI	CAGNNNCTG	1 cut(s)	1598
Ama87I	CYCGRG	1 cut(s)	1625
Aor13HI	TCCGGA	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	2272
AoxI	GGCC	3 cut(s)	766, 771, 992
ApeKI	GCWGC	4 cut(s)	35, 118, 740, 1505
ApoI	RAATTY	6 cut(s)	562, 780, 1016, 1401, 2051, 2363
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp700I	GAANNNNTTC	3 cut(s)	222, 1389, 2363
AspA2I	CCTAGG	2 cut(s)	590, 1064
AspLEI	GCGC	4 cut(s)	990, 1242, 2241, 2273
AspS9I	GGNCC	4 cut(s)	788, 884, 1763, 1817
AsuC2I	CCSGG	2 cut(s)	1580, 2438
AsuHPI	GGTGA	5 cut(s)	371, 628, 983, 1103, 1586
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	1625
AvaII	GGWCC	4 cut(s)	788, 884, 1763, 1817
AvrII	CCTAGG	2 cut(s)	590, 1064
BanI	GGYRCC	1 cut(s)	2429
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	36, 288
Bbv12I	GWGCWC	1 cut(s)	1186
BbvCI	CCTCAGC	1 cut(s)	1896
BbvI	GCAGC	4 cut(s)	22, 130, 727, 1492
BccI	CCATC	6 cut(s)	431, 472, 1082, 1091, 1754, 2069
BcgI	CGANNNNNNTGC	2 cut(s)	1787, 1821
BciT130I	CCWGG	8 cut(s)	289, 356, 515, 770, 775, 891, 967, 2084
BcnI	CCSGG	2 cut(s)	1580, 2438
BcoDI	GTCTC	6 cut(s)	89, 563, 1044, 1321, 2305, 2460
BfaI	CTAG	5 cut(s)	591, 1005, 1065, 1149, 2187
BfmI	CTRYAG	4 cut(s)	52, 624, 794, 1731
BfoI	RGCGCY	2 cut(s)	991, 2274
BfrI	CTTAAG	2 cut(s)	1289, 2294
BfuAI	ACCTGC	1 cut(s)	2399
BglI	GCCNNNNNGGC	2 cut(s)	845, 2438
BglII	AGATCT	1 cut(s)	1877
BisI	GCNGC	5 cut(s)	36, 119, 511, 741, 1506
BlnI	CCTAGG	2 cut(s)	590, 1064
BlsI	GCNGC	5 cut(s)	37, 120, 512, 742, 1507
BmcAI	AGTACT	1 cut(s)	2029
Bme18I	GGWCC	4 cut(s)	788, 884, 1763, 1817
BmeT110I	CYCGRG	1 cut(s)	1625
BmgBI	CACGTC	2 cut(s)	319, 2090
BmgT120I	GGNCC	4 cut(s)	788, 884, 1763, 1817
BmiI	GGNNCC	4 cut(s)	885, 1521, 1819, 2431
BmsI	GCATC	6 cut(s)	565, 1541, 1680, 1714, 1799, 2231
BpiI	GAAGAC	2 cut(s)	36, 288
BplI	GAGNNNNNCTC	2 cut(s)	1727, 1759
BpmI	CTGGAG	3 cut(s)	873, 933, 949
Bpu10I	CCTNAGC	2 cut(s)	1436, 1896
Bpu14I	TTCGAA	1 cut(s)	231
BpuMI	CCSGG	2 cut(s)	1580, 2438
Bsa29I	ATCGAT	1 cut(s)	1807
BsaAI	YACGTR	1 cut(s)	1169
BsaBI	GATNNNNATC	3 cut(s)	1941, 2221, 2334
BsaI	GGTCTC	1 cut(s)	2305
BsaWI	WCCGGW	2 cut(s)	410, 1132
Bsc4I	CCNNNNNNNGG	9 cut(s)	355, 721, 880, 896, 1088, 1115, 1991, 2443, 2444
Bse118I	RCCGGY	1 cut(s)	990
Bse1I	ACTGG	3 cut(s)	1120, 1335, 1673
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	3 cut(s)	1941, 2221, 2334
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	8 cut(s)	289, 356, 515, 770, 775, 891, 967, 2084
BseCI	ATCGAT	1 cut(s)	1807
BseJI	GATNNNNATC	3 cut(s)	1941, 2221, 2334
BseLI	CCNNNNNNNGG	9 cut(s)	355, 721, 880, 896, 1088, 1115, 1991, 2443, 2444
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	4 cut(s)	79, 100, 260, 1887
BseNI	ACTGG	3 cut(s)	1120, 1335, 1673
BseRI	GAGGAG	4 cut(s)	1025, 1424, 2390, 2465
BseXI	GCAGC	4 cut(s)	22, 130, 727, 1492
BsgI	GTGCAG	2 cut(s)	1332, 1491
Bsh1236I	CGCG	4 cut(s)	351, 859, 1242, 2241
BshFI	GGCC	3 cut(s)	768, 773, 994
BshNI	GGYRCC	1 cut(s)	2429
BshVI	ATCGAT	1 cut(s)	1807
BsiHKAI	GWGCWC	1 cut(s)	1186
BsiHKCI	CYCGRG	1 cut(s)	1625
BsiSI	CCGG	5 cut(s)	411, 991, 1133, 1580, 2438
BslFI	GGGAC	3 cut(s)	86, 497, 2100
BslI	CCNNNNNNNGG	9 cut(s)	355, 721, 880, 896, 1088, 1115, 1991, 2443, 2444
BsmAI	GTCTC	6 cut(s)	89, 563, 1044, 1321, 2305, 2460
BsmBI	CGTCTC	3 cut(s)	89, 1044, 2460
BsmFI	GGGAC	3 cut(s)	86, 497, 2100
BsmI	GAATGC	1 cut(s)	1707
BsnI	GGCC	3 cut(s)	768, 773, 994
Bso31I	GGTCTC	1 cut(s)	2305
BsoBI	CYCGRG	1 cut(s)	1625
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	1186
Bsp13I	TCCGGA	1 cut(s)	410
Bsp143I	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
Bsp19I	CCATGG	3 cut(s)	1043, 1320, 2346
BspACI	CCGC	9 cut(s)	5, 46, 221, 349, 511, 1197, 1279, 1966, 2441
BspANI	GGCC	3 cut(s)	768, 773, 994
BspCNI	CTCAG	4 cut(s)	78, 99, 259, 1888
BspDI	ATCGAT	1 cut(s)	1807
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	4 cut(s)	351, 859, 1242, 2241
BspLI	GGNNCC	4 cut(s)	885, 1521, 1819, 2431
BspMAI	CTGCAG	2 cut(s)	798, 1735
BspMI	ACCTGC	1 cut(s)	2399
BspPI	GGATC	1 cut(s)	2224
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	2429
BspTI	CTTAAG	2 cut(s)	1289, 2294
BspTNI	GGTCTC	1 cut(s)	2305
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	1120, 1335, 1673
BssAI	RCCGGY	1 cut(s)	990
BssMI	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	6 cut(s)	590, 916, 1043, 1064, 1320, 2346
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	8 cut(s)	289, 356, 515, 770, 775, 891, 967, 2084
Bst4CI	ACNGT	4 cut(s)	636, 699, 1600, 1612
Bst6I	CTCTTC	3 cut(s)	119, 363, 2012
BstAFI	CTTAAG	2 cut(s)	1289, 2294
BstAPI	GCANNNNNTGC	1 cut(s)	1078
BstBAI	YACGTR	1 cut(s)	1169
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	46, 942, 992, 1666
BstDEI	CTNAG	8 cut(s)	65, 86, 246, 334, 926, 1049, 1436, 1896
BstDSI	CCRYGG	4 cut(s)	479, 1043, 1320, 2346
BstEII	GGTNACC	1 cut(s)	1574
BstENI	CCTNNNNNAGG	1 cut(s)	878
BstFNI	CGCG	4 cut(s)	351, 859, 1242, 2241
BstH2I	RGCGCY	2 cut(s)	991, 2274
BstHHI	GCGC	4 cut(s)	990, 1242, 2241, 2273
BstKTI	GATC	6 cut(s)	380, 397, 1572, 1880, 2184, 2219
BstMAI	GTCTC	6 cut(s)	89, 563, 1044, 1321, 2305, 2460
BstMBI	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 845, 950, 1078, 1511, 1690, 2245, 2438
BstNI	CCWGG	8 cut(s)	289, 356, 515, 770, 775, 891, 967, 2084
BstNSI	RCATGY	1 cut(s)	944
BstPI	GGTNACC	1 cut(s)	1574
BstSFI	CTRYAG	4 cut(s)	52, 624, 794, 1731
BstUI	CGCG	4 cut(s)	351, 859, 1242, 2241
BstV1I	GCAGC	4 cut(s)	22, 130, 727, 1492
BstV2I	GAAGAC	2 cut(s)	36, 288
BstX2I	RGATCY	2 cut(s)	1877, 2216
BstYI	RGATCY	2 cut(s)	1877, 2216
Bsu15I	ATCGAT	1 cut(s)	1807
BsuRI	GGCC	3 cut(s)	768, 773, 994
BsuTUI	ATCGAT	1 cut(s)	1807
BtgI	CCRYGG	4 cut(s)	479, 1043, 1320, 2346
BtgZI	GCGATG	2 cut(s)	1257, 2256
BtrI	CACGTC	2 cut(s)	319, 2090
BtsIMutI	CAGTG	4 cut(s)	312, 1113, 1680, 2332
BveI	ACCTGC	1 cut(s)	2399
Cac8I	GCNNGC	4 cut(s)	46, 942, 992, 1666
CaiI	CAGNNNCTG	1 cut(s)	1598
CfoI	GCGC	4 cut(s)	990, 1242, 2241, 2273
Cfr10I	RCCGGY	1 cut(s)	990
Cfr13I	GGNCC	4 cut(s)	788, 884, 1763, 1817
ClaI	ATCGAT	1 cut(s)	1807
CseI	GACGC	2 cut(s)	41, 1026
Csp6I	GTAC	3 cut(s)	310, 1166, 2028
CviQI	GTAC	3 cut(s)	310, 1166, 2028
DdeI	CTNAG	8 cut(s)	65, 86, 246, 334, 926, 1049, 1436, 1896
DpnI	GATC	6 cut(s)	379, 396, 1571, 1879, 2183, 2218
DpnII	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
EaeI	YGGCCR	1 cut(s)	992
Eam1104I	CTCTTC	3 cut(s)	119, 363, 2012
EarI	CTCTTC	3 cut(s)	119, 363, 2012
EciI	GGCGGA	1 cut(s)	2456
Eco130I	CCWWGG	6 cut(s)	590, 916, 1043, 1064, 1320, 2346
Eco147I	AGGCCT	1 cut(s)	773
Eco31I	GGTCTC	1 cut(s)	2305
Eco47I	GGWCC	4 cut(s)	788, 884, 1763, 1817
Eco47III	AGCGCT	1 cut(s)	2272
Eco57I	CTGAAG	4 cut(s)	8, 128, 239, 1706
Eco88I	CYCGRG	1 cut(s)	1625
Eco91I	GGTNACC	1 cut(s)	1574
EcoNI	CCTNNNNNAGG	1 cut(s)	878
EcoO109I	RGGNCCY	1 cut(s)	884
EcoO65I	GGTNACC	1 cut(s)	1574
EcoRI	GAATTC	1 cut(s)	2363
EcoRII	CCWGG	8 cut(s)	287, 354, 513, 768, 773, 889, 965, 2082
EcoT14I	CCWWGG	6 cut(s)	590, 916, 1043, 1064, 1320, 2346
EcoT22I	ATGCAT	1 cut(s)	1707
ErhI	CCWWGG	6 cut(s)	590, 916, 1043, 1064, 1320, 2346
Esp3I	CGTCTC	3 cut(s)	89, 1044, 2460
FalI	AAGNNNNNCTT	3 cut(s)	38, 801, 833
FaqI	GGGAC	3 cut(s)	86, 497, 2100
FauI	CCCGC	2 cut(s)	53, 356
Fnu4HI	GCNGC	5 cut(s)	36, 119, 511, 741, 1506
Fsp4HI	GCNGC	5 cut(s)	36, 119, 511, 741, 1506
FspBI	CTAG	5 cut(s)	591, 1005, 1065, 1149, 2187
GlaI	GCGC	4 cut(s)	989, 1241, 2240, 2272
GluI	GCNGC	5 cut(s)	36, 119, 511, 741, 1506
GsuI	CTGGAG	3 cut(s)	873, 933, 949
HaeII	RGCGCY	2 cut(s)	991, 2274
HaeIII	GGCC	3 cut(s)	768, 773, 994
HapII	CCGG	5 cut(s)	411, 991, 1133, 1580, 2438
HgaI	GACGC	2 cut(s)	41, 1026
HhaI	GCGC	4 cut(s)	990, 1242, 2241, 2273
Hin6I	GCGC	4 cut(s)	988, 1240, 2239, 2271
HinP1I	GCGC	4 cut(s)	988, 1240, 2239, 2271
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HindIII	AAGCTT	2 cut(s)	20, 419
HpaII	CCGG	5 cut(s)	411, 991, 1133, 1580, 2438
HphI	GGTGA	5 cut(s)	371, 628, 983, 1103, 1586
Hpy166II	GTNNAC	8 cut(s)	10, 312, 322, 863, 978, 1166, 1971, 1994
Hpy8I	GTNNAC	8 cut(s)	10, 312, 322, 863, 978, 1166, 1971, 1994
Hpy99I	CGWCG	1 cut(s)	636
HpyAV	CCTTC	8 cut(s)	103, 758, 1197, 1370, 1737, 1831, 1843, 1859
HpyCH4III	ACNGT	4 cut(s)	636, 699, 1600, 1612
HpyCH4IV	ACGT	5 cut(s)	318, 1168, 1789, 2017, 2089
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 845, 950, 1078, 1511, 1690, 2245, 2438
HpyF3I	CTNAG	8 cut(s)	65, 86, 246, 334, 926, 1049, 1436, 1896
HpySE526I	ACGT	5 cut(s)	318, 1168, 1789, 2017, 2089
HspAI	GCGC	4 cut(s)	988, 1240, 2239, 2271
Kpn2I	TCCGGA	1 cut(s)	410
KroI	GCCGGC	1 cut(s)	990
KroNI	GCCGGC	1 cut(s)	992
Kzo9I	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
LmnI	GCTCC	4 cut(s)	737, 1069, 1189, 1719
Lsp1109I	GCAGC	4 cut(s)	22, 130, 727, 1492
LweI	GCATC	6 cut(s)	565, 1541, 1680, 1714, 1799, 2231
MaeI	CTAG	5 cut(s)	591, 1005, 1065, 1149, 2187
MaeII	ACGT	5 cut(s)	318, 1168, 1789, 2017, 2089
MaeIII	GTNAC	8 cut(s)	359, 430, 556, 616, 1250, 1574, 1675, 1999
MalI	GATC	6 cut(s)	379, 396, 1571, 1879, 2183, 2218
MboI	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	2 cut(s)	1877, 2216
MhlI	GDGCHC	1 cut(s)	1186
MlyI	GAGTC	5 cut(s)	983, 1421, 1522, 1757, 2051
MmeI	TCCRAC	2 cut(s)	481, 1133
Mph1103I	ATGCAT	1 cut(s)	1707
MroI	TCCGGA	1 cut(s)	410
MroNI	GCCGGC	1 cut(s)	990
MroXI	GAANNNNTTC	3 cut(s)	222, 1389, 2363
MseI	TTAA	7 cut(s)	599, 720, 819, 1290, 1953, 2231, 2295
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	1966
MspCI	CTTAAG	2 cut(s)	1289, 2294
MspI	CCGG	5 cut(s)	411, 991, 1133, 1580, 2438
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	1707
MvaI	CCWGG	8 cut(s)	289, 356, 515, 770, 775, 891, 967, 2084
MvnI	CGCG	4 cut(s)	351, 859, 1242, 2241
MwoI	GCNNNNNNNGC	8 cut(s)	41, 845, 950, 1078, 1511, 1690, 2245, 2438
NaeI	GCCGGC	1 cut(s)	992
NciI	CCSGG	2 cut(s)	1580, 2438
NcoI	CCATGG	3 cut(s)	1043, 1320, 2346
NdeII	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
NgoMIV	GCCGGC	1 cut(s)	990
NlaIV	GGNNCC	4 cut(s)	885, 1521, 1819, 2431
NmuCI	GTSAC	6 cut(s)	359, 556, 616, 1250, 1574, 1675
NsiI	ATGCAT	1 cut(s)	1707
NspI	RCATGY	1 cut(s)	944
NspV	TTCGAA	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	944
PasI	CCCWGGG	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	773
PcsI	WCGNNNNNNNCGW	1 cut(s)	1159
PctI	GAATGC	1 cut(s)	1707
PdiI	GCCGGC	1 cut(s)	992
PdmI	GAANNNNTTC	3 cut(s)	222, 1389, 2363
PfeI	GAWTC	5 cut(s)	250, 824, 1471, 1853, 2335
PfoI	TCCNGGA	1 cut(s)	889
PkrI	GCNGC	5 cut(s)	37, 120, 512, 742, 1507
PleI	GAGTC	5 cut(s)	982, 1420, 1522, 1756, 2050
PpsI	GAGTC	5 cut(s)	982, 1420, 1522, 1756, 2050
Ppu21I	YACGTR	1 cut(s)	1169
PpuMI	RGGWCCY	1 cut(s)	884
PsiI	TTATAA	1 cut(s)	1493
Psp1406I	AACGTT	2 cut(s)	1789, 2017
Psp5II	RGGWCCY	1 cut(s)	884
Psp6I	CCWGG	8 cut(s)	287, 354, 513, 768, 773, 889, 965, 2082
PspEI	GGTNACC	1 cut(s)	1574
PspGI	CCWGG	8 cut(s)	287, 354, 513, 768, 773, 889, 965, 2082
PspN4I	GGNNCC	4 cut(s)	885, 1521, 1819, 2431
PspPI	GGNCC	4 cut(s)	788, 884, 1763, 1817
PspPPI	RGGWCCY	1 cut(s)	884
PstI	CTGCAG	2 cut(s)	798, 1735
PstNI	CAGNNNCTG	1 cut(s)	1598
PsuI	RGATCY	2 cut(s)	1877, 2216
RsaI	GTAC	3 cut(s)	311, 1167, 2029
RsaNI	GTAC	3 cut(s)	310, 1166, 2028
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	7 cut(s)	599, 720, 819, 1290, 1953, 2231, 2295
SatI	GCNGC	5 cut(s)	36, 119, 511, 741, 1506
Sau3AI	GATC	6 cut(s)	377, 394, 1569, 1877, 2181, 2216
Sau96I	GGNCC	4 cut(s)	788, 884, 1763, 1817
ScaI	AGTACT	1 cut(s)	2029
SchI	GAGTC	5 cut(s)	983, 1421, 1522, 1757, 2051
SduI	GDGCHC	1 cut(s)	1186
SfaNI	GCATC	6 cut(s)	565, 1541, 1680, 1714, 1799, 2231
SfcI	CTRYAG	4 cut(s)	52, 624, 794, 1731
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	4 cut(s)	788, 884, 1763, 1817
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	1289, 2294
SmoI	CTYRAG	2 cut(s)	1289, 2294
SphI	GCATGC	1 cut(s)	944
SseBI	AGGCCT	1 cut(s)	773
SsiI	CCGC	9 cut(s)	5, 46, 221, 349, 511, 1197, 1279, 1966, 2441
SspI	AATATT	2 cut(s)	1771, 2109
SspMI	CTAG	5 cut(s)	591, 1005, 1065, 1149, 2187
StuI	AGGCCT	1 cut(s)	773
StyI	CCWWGG	6 cut(s)	590, 916, 1043, 1064, 1320, 2346
TaaI	ACNGT	4 cut(s)	636, 699, 1600, 1612
TaiI	ACGT	5 cut(s)	321, 1171, 1792, 2020, 2092
TaqI	TCGA	7 cut(s)	231, 306, 1393, 1474, 1699, 1807, 2265
TatI	WGTACW	2 cut(s)	309, 2027
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	5 cut(s)	250, 824, 1471, 1853, 2335
Tru1I	TTAA	7 cut(s)	599, 720, 819, 1290, 1953, 2231, 2295
Tru9I	TTAA	7 cut(s)	599, 720, 819, 1290, 1953, 2231, 2295
TscAI	CASTG	4 cut(s)	319, 1120, 1680, 2332
TseFI	GTSAC	6 cut(s)	359, 556, 616, 1250, 1574, 1675
TseI	GCWGC	4 cut(s)	35, 118, 740, 1505
Tsp45I	GTSAC	6 cut(s)	359, 556, 616, 1250, 1574, 1675
TspDTI	ATGAA	9 cut(s)	288, 837, 974, 1260, 1341, 1515, 2103, 2186, 2307
TspGWI	ACGGA	5 cut(s)	71, 449, 1298, 1354, 2505
TspRI	CASTG	4 cut(s)	319, 1120, 1680, 2332
Vha464I	CTTAAG	2 cut(s)	1289, 2294
VpaK11BI	GGWCC	4 cut(s)	788, 884, 1763, 1817
XagI	CCTNNNNNAGG	1 cut(s)	878
XapI	RAATTY	6 cut(s)	562, 780, 1016, 1401, 2051, 2363
XbaI	TCTAGA	1 cut(s)	1004
XceI	RCATGY	1 cut(s)	944
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 1327
XmaJI	CCTAGG	2 cut(s)	590, 1064
XmnI	GAANNNNTTC	3 cut(s)	222, 1389, 2363
XspI	CTAG	5 cut(s)	591, 1005, 1065, 1149, 2187
ZrmI	AGTACT	1 cut(s)	2029
Zsp2I	ATGCAT	1 cut(s)	1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.