Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003781

Physical Location & Seq

Genomic Coordinates Forward (+)

37188489 .. 37198794

Gene Structure 10306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37290.18

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2691 bp

ATGTTAATATCAATACATACTACTTTGGCAGACACAGAAAAACCCATCAGAATCTCCCTCCCTCCATTTTCTCTCCGACTCTTCTGTCTGCTCTCCGTCACTCTCAGCAATCAGCAGCCGTCTCTCCGCCGCCTCCACTCACTCTACCACTCTCTGTCTCTCTCTCCCTCCTTCTCTATGGCGGTGGACAAGGACAAGCTTCAGGAAGACGGTGCTATTGCCCGCTTCTACAGGATTATTCTCAGTTGGGACTATTTCCGTCTCAGAAAAGAGGCAAACAAGCTGAAGGACAAGCAGCAGAAGAGTAAGGGGGAAGAAATAGTTTATGAGGGTTTAGGAATTGCAAAAGTGAAAGGCACCTACAAAGATGTGGATGACTATATCTCTACATATGAACCGCTTCTTTTCGAAGAAGTCAAAGCTCAGATTCTTCAGGAAAAAGACTTGGATGAATTGGAAGACCCCAGGGAAAACTTGGTTGTCGAGTACACTGACGTGGACGGGTTTCACTTAGCAACCCTTACCCGCGACCAGGGTGACTTGGAAGAGAGCGGATCAATAACGCAGAATGATCTTTTGCTTCTTTCCGGACAAAAGCTTCAATGGGTAACGGATGGTAAAGAGAAGTATATCCAACCTCCATCTACCAAACATCCACGGGACTATGCTTTTGCATTGGTGGAAAGCCGCCAGGCAAGTTCTTTTAGGATTAGAATGTATTTGGGTGGAGAAGTCACTAATTTGGAGACAGATGCAGTTGAATGTCCTAGGCTGTTAAATGTGAAGTCTTTGGTGACTTCTACAGAACGACGGTTCTTTTACACTCTAAAGATTTGCAGTTTATCAACTATTGCTCGTGAATATGTAGCTCTACGGTCAATTGGTTCTCTCCCTTTTAAGGATATAATTCTTGGAGCTGCTGAAAAAAATATCAATTCGGAAGGCCAGGCCTGGAAAATTTCCGGACCTCTGCAGGAATATATAAAAGAAAATCTTAATGAATCTCAACAAAACGCCATACAGGCCGGTCTATCGCGTAAACCATTTATCCTGATACAGGGTCCTCCAGGAACAGGAAAGACACAAACTATCCTTGGGCTTCTTAGTGCCATTTTGCATGCTACTCCAGCAAGAATGAACTCCAGGGGTGAGTCAACCATAAAGCGCCGGCCAAAGTTATCTAGAGAGGAGAAATTCAAACATTGGATAAAAGCGTCTCCATGGCTTAGTGGTAGAAATCCTAGGGAGCAAATAATGCCTGTGGATGGTGATGATGGTGTTTTTCCGACCACTGGAAATGAGTTGAAACCGGAAGTGGTCAATTCTAGTCGTAAATATCGTGTACGTGTCCTTGTGTGTGCTCCTTCAAACTCTGCACTCGATGAGATTGTTTTGCGTGTTCTAAACAACGGAGTGCGTGATGAAAGTGACCATTCGTATAGCCCCAAAATTGTGCGGATTGGTCTTAAGGAACATCATTCTGTCCGTGCAGTCTCCATGAATGAACTGGTAGAACGGAAGAAAGGAAGTATAGGAGGTGGTAAAGGCAGAGATGGAGGTGCTGAAAGGTTTCGAGCAGAAATTTTGGAGGAGTCTGTAATTGTGTTTTCTACCCTTAGCTTTAGTGGTTCAAGTCTTTTCAGCAAATGGAATCGAGATTTTGATGTTGTTATAATAGATGAAGCTGCACAAGCTGTGGAACCAGCGACTCTTGTTCCATTGACAAATGGATGCAAACAAGTATTTCTGATTGGTGACCCGGTTCAACTGCCAGCTACTGTAATTTCAACCGTTGCTAATAAACTCGGGTATGGAACGAGTTTGTTTGAGAGATTTCAGAGAGCTGGCTATCCAGTGACCATGCTGAAGATGCAGTATCGAATGCATCCAGAGATTAGGAGCTTTCCTTCTGCAGAGTTTTACTCGGAGTCATTGGAGGATGGTCCTAATATTATAGAGCAGACACAACGTTCTTGGCATGATTATCGATGCTTTGGACCCTTCTGCTTTTTTGACATGCATCAAGGGAAGGAATCCAAGCCCGAAGGAAGTGGTAGATCTGTTGTGAATGTTGCTGAGGTTGATTTTATCATGCTCTTGTATCATAATTTAGTGGATAAATATCCAGAGCTTAAATCAAGTCAGCGGTTCACGATTATATCCCCGTATCGTGGACAAGTAACTCTCTTGAAAGAACGTTTCAGAAGTACTTTTGGAGTGGAGTCTGACACATTCGTGGATATTACTACCATTGATGGTTGCCAGGGACGTGAAAAGGATGTTGCAATATTTTCATGTGTCAGGACAAACGAACATGGAAAAATTGGGTTTCTGTCTGATTTTCGGCGAATGAATGTTGCGATCACTAGAGCAAAATCTTCTGTCTTGGTAGTGGGATCTGCATCAACATTAAGGAAGCGCGATGAGCATTGGAATAACCTTATCGAAAGCGCTGAAAAGAGGGATCGTTTGCTTAAGGTCTCACAGCCATACGCTTCATTTTTCAGTGATGAGAATCTGGAAACCATGGCTATCAAGAAAGAATTCTCATTGGAGGAGGTTGAGAATGATGAGGTGGATAACTATGCAGGTTCATACAATTTTGGGGGTGCCGACCCGGCGGAGGGAGAGGAGAACGATGATGGAGACGGGGGTATGGACATGGATGATGGAGGCAACGGCGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007154 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009875 GO:0009987 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

897

Amino Acids

100.84

Weight (kDa)

5.78

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15570 AT4G15570 AT4G15570 AT4G15570
fragaria_vesca	FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281
malus_domestica	MD15G1420100.v1.1 MD15G1420400.v1.1
prunus_persica	Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1
pyrus_communis	pycom15g37290
rosa_chinensis	RchiOBHm_Chr4g0407481
rosa_laevigata	RLG00000008716
rosa_multiflora	Rmu_sc0004841.1_g000016
rosa_roxburghii	Rroxscaffold_5G00352130
rosa_rugosa	Rorug04G0080000
rosa_samantha	Rh4AG144700 Rh4BG142600 Rh4CG151400 Rh4DG138600
rosa_wichuraiana	Rw4G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1673
AasI	GACNNNNNNGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	2579
AccB1I	GGYRCC	2 cut(s)	356, 2609
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	3 cut(s)	528, 1036, 2421
AccIII	TCCGGA	2 cut(s)	587, 962
AclI	AACGTT	2 cut(s)	1969, 2197
AclWI	GGATC	3 cut(s)	562, 2404, 2472
AcoI	YGGCCR	1 cut(s)	1169
AcsI	RAATTY	4 cut(s)	957, 1193, 1581, 2543
AcuI	CTGAAG	4 cut(s)	185, 305, 416, 1886
AfaI	GTAC	3 cut(s)	488, 1344, 2209
AfeI	AGCGCT	1 cut(s)	2452
AfiI	CCNNNNNNNGG	9 cut(s)	532, 898, 1057, 1073, 1265, 1292, 2171, 2623, 2624
AflII	CTTAAG	2 cut(s)	1466, 2474
AflIII	ACRYGT	1 cut(s)	1345
AgsI	TTSAA	9 cut(s)	602, 761, 1198, 1306, 1368, 1632, 1766, 1788, 2191
AjiI	CACGTC	2 cut(s)	496, 2270
AjnI	CCWGG	8 cut(s)	464, 531, 690, 945, 950, 1066, 1142, 2262
AleI	CACNNNNGTG	2 cut(s)	494, 2234
Alw21I	GWGCWC	1 cut(s)	1363
Alw26I	GTCTC	8 cut(s)	126, 162, 266, 740, 1221, 1498, 2485, 2640
AlwI	GGATC	3 cut(s)	562, 2404, 2472
AlwNI	CAGNNNCTG	1 cut(s)	1778
Ama87I	CYCGRG	1 cut(s)	1805
Aor13HI	TCCGGA	2 cut(s)	587, 962
Aor51HI	AGCGCT	1 cut(s)	2452
AoxI	GGCC	4 cut(s)	943, 948, 1023, 1169
ApeKI	GCWGC	4 cut(s)	115, 295, 917, 1685
ApoI	RAATTY	4 cut(s)	957, 1193, 1581, 2543
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	3 cut(s)	399, 1569, 2543
AspA2I	CCTAGG	2 cut(s)	767, 1241
AspLEI	GCGC	3 cut(s)	1167, 2421, 2453
AspS9I	GGNCC	4 cut(s)	965, 1061, 1943, 1997
AsuC2I	CCSGG	2 cut(s)	1760, 2618
AsuHPI	GGTGA	5 cut(s)	548, 805, 1160, 1280, 1766
AsuII	TTCGAA	1 cut(s)	408
AvaI	CYCGRG	1 cut(s)	1805
AvaII	GGWCC	4 cut(s)	965, 1061, 1943, 1997
AvrII	CCTAGG	2 cut(s)	767, 1241
BanI	GGYRCC	2 cut(s)	356, 2609
BauI	CACGAG	1 cut(s)	855
BbsI	GAAGAC	2 cut(s)	213, 465
Bbv12I	GWGCWC	1 cut(s)	1363
BbvCI	CCTCAGC	1 cut(s)	2076
BbvI	GCAGC	4 cut(s)	127, 307, 904, 1672
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	1967, 2001
BciT130I	CCWGG	8 cut(s)	466, 533, 692, 947, 952, 1068, 1144, 2264
BcnI	CCSGG	2 cut(s)	1760, 2618
BcoDI	GTCTC	8 cut(s)	126, 162, 266, 740, 1221, 1498, 2485, 2640
BfaI	CTAG	5 cut(s)	768, 1182, 1242, 1326, 2367
BfmI	CTRYAG	4 cut(s)	229, 801, 971, 1911
BfoI	RGCGCY	2 cut(s)	1168, 2454
BfrI	CTTAAG	2 cut(s)	1466, 2474
BfuAI	ACCTGC	1 cut(s)	2579
BglI	GCCNNNNNGGC	2 cut(s)	1022, 2618
BglII	AGATCT	1 cut(s)	2057
BisI	GCNGC	6 cut(s)	116, 130, 296, 688, 918, 1686
BlnI	CCTAGG	2 cut(s)	767, 1241
BlsI	GCNGC	6 cut(s)	117, 131, 297, 689, 919, 1687
BmcAI	AGTACT	1 cut(s)	2209
Bme18I	GGWCC	4 cut(s)	965, 1061, 1943, 1997
BmeT110I	CYCGRG	1 cut(s)	1805
BmgBI	CACGTC	2 cut(s)	496, 2270
BmgT120I	GGNCC	4 cut(s)	965, 1061, 1943, 1997
BmiI	GGNNCC	5 cut(s)	358, 1062, 1701, 1999, 2611
BmsI	GCATC	7 cut(s)	742, 1721, 1860, 1894, 1979, 2029, 2411
BpiI	GAAGAC	2 cut(s)	213, 465
BplI	GAGNNNNNCTC	2 cut(s)	1907, 1939
BpmI	CTGGAG	3 cut(s)	1050, 1110, 1126
Bpu10I	CCTNAGC	2 cut(s)	1616, 2076
Bpu14I	TTCGAA	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	1760, 2618
Bsa29I	ATCGAT	1 cut(s)	1987
BsaAI	YACGTR	1 cut(s)	1346
BsaBI	GATNNNNATC	3 cut(s)	2121, 2401, 2514
BsaI	GGTCTC	1 cut(s)	2485
BsaWI	WCCGGW	3 cut(s)	587, 962, 1309
Bsc4I	CCNNNNNNNGG	9 cut(s)	532, 898, 1057, 1073, 1265, 1292, 2171, 2623, 2624
Bse118I	RCCGGY	2 cut(s)	1025, 1167
Bse1I	ACTGG	3 cut(s)	1297, 1512, 1853
Bse8I	GATNNNNATC	3 cut(s)	2121, 2401, 2514
BseAI	TCCGGA	2 cut(s)	587, 962
BseBI	CCWGG	8 cut(s)	466, 533, 692, 947, 952, 1068, 1144, 2264
BseCI	ATCGAT	1 cut(s)	1987
BseJI	GATNNNNATC	3 cut(s)	2121, 2401, 2514
BseLI	CCNNNNNNNGG	9 cut(s)	532, 898, 1057, 1073, 1265, 1292, 2171, 2623, 2624
BseMII	CTCAG	5 cut(s)	118, 256, 277, 437, 2067
BseNI	ACTGG	3 cut(s)	1297, 1512, 1853
BseRI	GAGGAG	4 cut(s)	1202, 1604, 2570, 2645
BseXI	GCAGC	4 cut(s)	127, 307, 904, 1672
BsgI	GTGCAG	3 cut(s)	1359, 1509, 1671
Bsh1236I	CGCG	3 cut(s)	528, 1036, 2421
BshFI	GGCC	4 cut(s)	945, 950, 1025, 1171
BshNI	GGYRCC	2 cut(s)	356, 2609
BshVI	ATCGAT	1 cut(s)	1987
BsiHKAI	GWGCWC	1 cut(s)	1363
BsiHKCI	CYCGRG	1 cut(s)	1805
BsiSI	CCGG	7 cut(s)	588, 963, 1026, 1168, 1310, 1760, 2618
BslFI	GGGAC	3 cut(s)	263, 674, 2280
BslI	CCNNNNNNNGG	9 cut(s)	532, 898, 1057, 1073, 1265, 1292, 2171, 2623, 2624
BsmAI	GTCTC	8 cut(s)	126, 162, 266, 740, 1221, 1498, 2485, 2640
BsmBI	CGTCTC	4 cut(s)	126, 266, 1221, 2640
BsmFI	GGGAC	3 cut(s)	263, 674, 2280
BsmI	GAATGC	1 cut(s)	1887
BsnI	GGCC	4 cut(s)	945, 950, 1025, 1171
Bso31I	GGTCTC	1 cut(s)	2485
BsoBI	CYCGRG	1 cut(s)	1805
Bsp119I	TTCGAA	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	1363
Bsp13I	TCCGGA	2 cut(s)	587, 962
Bsp143I	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
Bsp19I	CCATGG	2 cut(s)	1220, 2526
BspANI	GGCC	4 cut(s)	945, 950, 1025, 1171
BspCNI	CTCAG	5 cut(s)	117, 255, 276, 436, 2068
BspDI	ATCGAT	1 cut(s)	1987
BspEI	TCCGGA	2 cut(s)	587, 962
BspFNI	CGCG	3 cut(s)	528, 1036, 2421
BspLI	GGNNCC	5 cut(s)	358, 1062, 1701, 1999, 2611
BspMAI	CTGCAG	2 cut(s)	975, 1915
BspMI	ACCTGC	1 cut(s)	2579
BspPI	GGATC	3 cut(s)	562, 2404, 2472
BspT104I	TTCGAA	1 cut(s)	408
BspT107I	GGYRCC	2 cut(s)	356, 2609
BspTI	CTTAAG	2 cut(s)	1466, 2474
BspTNI	GGTCTC	1 cut(s)	2485
BsrBI	CCGCTC	1 cut(s)	552
BsrFI	RCCGGY	2 cut(s)	1025, 1167
BsrI	ACTGG	3 cut(s)	1297, 1512, 1853
BssAI	RCCGGY	2 cut(s)	1025, 1167
BssMI	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
BssSI	CACGAG	1 cut(s)	855
BssT1I	CCWWGG	5 cut(s)	767, 1093, 1220, 1241, 2526
Bst2BI	CACGAG	1 cut(s)	855
Bst2UI	CCWGG	8 cut(s)	466, 533, 692, 947, 952, 1068, 1144, 2264
Bst4CI	ACNGT	5 cut(s)	212, 813, 876, 1780, 1792
Bst6I	CTCTTC	3 cut(s)	86, 296, 540
BstAFI	CTTAAG	2 cut(s)	1466, 2474
BstAPI	GCANNNNNTGC	1 cut(s)	1255
BstBAI	YACGTR	1 cut(s)	1346
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	5 cut(s)	223, 1119, 1169, 1773, 1846
BstDEI	CTNAG	9 cut(s)	104, 242, 263, 423, 511, 1103, 1226, 1616, 2076
BstDSI	CCRYGG	3 cut(s)	656, 1220, 2526
BstEII	GGTNACC	1 cut(s)	1754
BstENI	CCTNNNNNAGG	1 cut(s)	1055
BstFNI	CGCG	3 cut(s)	528, 1036, 2421
BstH2I	RGCGCY	2 cut(s)	1168, 2454
BstHHI	GCGC	3 cut(s)	1167, 2421, 2453
BstKTI	GATC	6 cut(s)	557, 574, 2060, 2364, 2399, 2467
BstMAI	GTCTC	8 cut(s)	126, 162, 266, 740, 1221, 1498, 2485, 2640
BstMBI	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
BstMWI	GCNNNNNNNGC	7 cut(s)	1022, 1127, 1255, 1691, 1870, 2425, 2618
BstNI	CCWGG	8 cut(s)	466, 533, 692, 947, 952, 1068, 1144, 2264
BstNSI	RCATGY	2 cut(s)	1121, 2020
BstPI	GGTNACC	1 cut(s)	1754
BstSFI	CTRYAG	4 cut(s)	229, 801, 971, 1911
BstUI	CGCG	3 cut(s)	528, 1036, 2421
BstV1I	GCAGC	4 cut(s)	127, 307, 904, 1672
BstV2I	GAAGAC	2 cut(s)	213, 465
BstX2I	RGATCY	2 cut(s)	2057, 2396
BstYI	RGATCY	2 cut(s)	2057, 2396
Bsu15I	ATCGAT	1 cut(s)	1987
BsuRI	GGCC	4 cut(s)	945, 950, 1025, 1171
BsuTUI	ATCGAT	1 cut(s)	1987
BtgI	CCRYGG	3 cut(s)	656, 1220, 2526
BtgZI	GCGATG	1 cut(s)	2436
BtrI	CACGTC	2 cut(s)	496, 2270
BtsIMutI	CAGTG	4 cut(s)	489, 1290, 1860, 2512
BveI	ACCTGC	1 cut(s)	2579
Cac8I	GCNNGC	5 cut(s)	223, 1119, 1169, 1773, 1846
CaiI	CAGNNNCTG	1 cut(s)	1778
CfoI	GCGC	3 cut(s)	1167, 2421, 2453
Cfr10I	RCCGGY	2 cut(s)	1025, 1167
Cfr13I	GGNCC	4 cut(s)	965, 1061, 1943, 1997
ClaI	ATCGAT	1 cut(s)	1987
CseI	GACGC	1 cut(s)	1203
Csp6I	GTAC	3 cut(s)	487, 1343, 2208
CviQI	GTAC	3 cut(s)	487, 1343, 2208
DdeI	CTNAG	9 cut(s)	104, 242, 263, 423, 511, 1103, 1226, 1616, 2076
DpnI	GATC	6 cut(s)	556, 573, 2059, 2363, 2398, 2466
DpnII	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	1169
Eam1104I	CTCTTC	3 cut(s)	86, 296, 540
EarI	CTCTTC	3 cut(s)	86, 296, 540
EciI	GGCGGA	2 cut(s)	116, 2636
Eco130I	CCWWGG	5 cut(s)	767, 1093, 1220, 1241, 2526
Eco147I	AGGCCT	1 cut(s)	950
Eco31I	GGTCTC	1 cut(s)	2485
Eco47I	GGWCC	4 cut(s)	965, 1061, 1943, 1997
Eco47III	AGCGCT	1 cut(s)	2452
Eco57I	CTGAAG	4 cut(s)	185, 305, 416, 1886
Eco88I	CYCGRG	1 cut(s)	1805
Eco91I	GGTNACC	1 cut(s)	1754
EcoNI	CCTNNNNNAGG	1 cut(s)	1055
EcoO109I	RGGNCCY	1 cut(s)	1061
EcoO65I	GGTNACC	1 cut(s)	1754
EcoRI	GAATTC	1 cut(s)	2543
EcoRII	CCWGG	8 cut(s)	464, 531, 690, 945, 950, 1066, 1142, 2262
EcoT14I	CCWWGG	5 cut(s)	767, 1093, 1220, 1241, 2526
EcoT22I	ATGCAT	2 cut(s)	1887, 2022
ErhI	CCWWGG	5 cut(s)	767, 1093, 1220, 1241, 2526
Esp3I	CGTCTC	4 cut(s)	126, 266, 1221, 2640
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FaqI	GGGAC	3 cut(s)	263, 674, 2280
FauI	CCCGC	2 cut(s)	230, 533
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	6 cut(s)	116, 130, 296, 688, 918, 1686
Fsp4HI	GCNGC	6 cut(s)	116, 130, 296, 688, 918, 1686
FspBI	CTAG	5 cut(s)	768, 1182, 1242, 1326, 2367
GlaI	GCGC	3 cut(s)	1166, 2420, 2452
GluI	GCNGC	6 cut(s)	116, 130, 296, 688, 918, 1686
GsuI	CTGGAG	3 cut(s)	1050, 1110, 1126
HaeII	RGCGCY	2 cut(s)	1168, 2454
HaeIII	GGCC	4 cut(s)	945, 950, 1025, 1171
HapII	CCGG	7 cut(s)	588, 963, 1026, 1168, 1310, 1760, 2618
HgaI	GACGC	1 cut(s)	1203
HhaI	GCGC	3 cut(s)	1167, 2421, 2453
Hin6I	GCGC	3 cut(s)	1165, 2419, 2451
HinP1I	GCGC	3 cut(s)	1165, 2419, 2451
HincII	GTYRAC	1 cut(s)	1155
HindII	GTYRAC	1 cut(s)	1155
HindIII	AAGCTT	2 cut(s)	197, 596
HpaII	CCGG	7 cut(s)	588, 963, 1026, 1168, 1310, 1760, 2618
HphI	GGTGA	5 cut(s)	548, 805, 1160, 1280, 1766
Hpy166II	GTNNAC	8 cut(s)	187, 489, 499, 1040, 1155, 1343, 2151, 2174
Hpy8I	GTNNAC	8 cut(s)	187, 489, 499, 1040, 1155, 1343, 2151, 2174
Hpy99I	CGWCG	1 cut(s)	813
HpyAV	CCTTC	8 cut(s)	181, 280, 935, 1374, 1917, 2011, 2023, 2039
HpyCH4III	ACNGT	5 cut(s)	212, 813, 876, 1780, 1792
HpyCH4IV	ACGT	5 cut(s)	495, 1345, 1969, 2197, 2269
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1022, 1127, 1255, 1691, 1870, 2425, 2618
HpyF3I	CTNAG	9 cut(s)	104, 242, 263, 423, 511, 1103, 1226, 1616, 2076
HpySE526I	ACGT	5 cut(s)	495, 1345, 1969, 2197, 2269
HspAI	GCGC	3 cut(s)	1165, 2419, 2451
Kpn2I	TCCGGA	2 cut(s)	587, 962
KroI	GCCGGC	1 cut(s)	1167
KroNI	GCCGGC	1 cut(s)	1169
Kzo9I	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
LmnI	GCTCC	4 cut(s)	914, 1246, 1366, 1899
Lsp1109I	GCAGC	4 cut(s)	127, 307, 904, 1672
LweI	GCATC	7 cut(s)	742, 1721, 1860, 1894, 1979, 2029, 2411
MaeI	CTAG	5 cut(s)	768, 1182, 1242, 1326, 2367
MaeII	ACGT	5 cut(s)	495, 1345, 1969, 2197, 2269
MaeIII	GTNAC	9 cut(s)	97, 536, 607, 733, 793, 1427, 1754, 1855, 2179
MalI	GATC	6 cut(s)	556, 573, 2059, 2363, 2398, 2466
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	2 cut(s)	2057, 2396
MhlI	GDGCHC	1 cut(s)	1363
MlyI	GAGTC	6 cut(s)	72, 1160, 1601, 1702, 1937, 2231
MmeI	TCCRAC	3 cut(s)	100, 658, 1310
Mph1103I	ATGCAT	2 cut(s)	1887, 2022
MroI	TCCGGA	2 cut(s)	587, 962
MroNI	GCCGGC	1 cut(s)	1167
MroXI	GAANNNNTTC	3 cut(s)	399, 1569, 2543
MseI	TTAA	8 cut(s)	5, 776, 897, 996, 1467, 2133, 2411, 2475
MslI	CAYNNNNRTG	2 cut(s)	494, 2234
MspA1I	CMGCKG	1 cut(s)	2146
MspCI	CTTAAG	2 cut(s)	1466, 2474
MspI	CCGG	7 cut(s)	588, 963, 1026, 1168, 1310, 1760, 2618
MunI	CAATTG	1 cut(s)	879
Mva1269I	GAATGC	1 cut(s)	1887
MvaI	CCWGG	8 cut(s)	466, 533, 692, 947, 952, 1068, 1144, 2264
MvnI	CGCG	3 cut(s)	528, 1036, 2421
MwoI	GCNNNNNNNGC	7 cut(s)	1022, 1127, 1255, 1691, 1870, 2425, 2618
NaeI	GCCGGC	1 cut(s)	1169
NciI	CCSGG	2 cut(s)	1760, 2618
NcoI	CCATGG	2 cut(s)	1220, 2526
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
NgoMIV	GCCGGC	1 cut(s)	1167
NlaIV	GGNNCC	5 cut(s)	358, 1062, 1701, 1999, 2611
NmuCI	GTSAC	7 cut(s)	97, 536, 733, 793, 1427, 1754, 1855
NsiI	ATGCAT	2 cut(s)	1887, 2022
NspI	RCATGY	2 cut(s)	1121, 2020
NspV	TTCGAA	1 cut(s)	408
OliI	CACNNNNGTG	2 cut(s)	494, 2234
PaeI	GCATGC	1 cut(s)	1121
PasI	CCCWGGG	1 cut(s)	465
PceI	AGGCCT	1 cut(s)	950
PcsI	WCGNNNNNNNCGW	1 cut(s)	1336
PctI	GAATGC	1 cut(s)	1887
PdiI	GCCGGC	1 cut(s)	1169
PdmI	GAANNNNTTC	3 cut(s)	399, 1569, 2543
PfeI	GAWTC	6 cut(s)	51, 427, 1001, 1651, 2033, 2515
PfoI	TCCNGGA	1 cut(s)	1066
PkrI	GCNGC	6 cut(s)	117, 131, 297, 689, 919, 1687
PleI	GAGTC	6 cut(s)	72, 1159, 1600, 1702, 1936, 2230
PpsI	GAGTC	6 cut(s)	72, 1159, 1600, 1702, 1936, 2230
Ppu21I	YACGTR	1 cut(s)	1346
PpuMI	RGGWCCY	1 cut(s)	1061
PsiI	TTATAA	1 cut(s)	1673
Psp1406I	AACGTT	2 cut(s)	1969, 2197
Psp5II	RGGWCCY	1 cut(s)	1061
Psp6I	CCWGG	8 cut(s)	464, 531, 690, 945, 950, 1066, 1142, 2262
PspEI	GGTNACC	1 cut(s)	1754
PspGI	CCWGG	8 cut(s)	464, 531, 690, 945, 950, 1066, 1142, 2262
PspN4I	GGNNCC	5 cut(s)	358, 1062, 1701, 1999, 2611
PspPI	GGNCC	4 cut(s)	965, 1061, 1943, 1997
PspPPI	RGGWCCY	1 cut(s)	1061
PstI	CTGCAG	2 cut(s)	975, 1915
PstNI	CAGNNNCTG	1 cut(s)	1778
PsuI	RGATCY	2 cut(s)	2057, 2396
RsaI	GTAC	3 cut(s)	488, 1344, 2209
RsaNI	GTAC	3 cut(s)	487, 1343, 2208
RseI	CAYNNNNRTG	2 cut(s)	494, 2234
SaqAI	TTAA	8 cut(s)	5, 776, 897, 996, 1467, 2133, 2411, 2475
SatI	GCNGC	6 cut(s)	116, 130, 296, 688, 918, 1686
Sau3AI	GATC	6 cut(s)	554, 571, 2057, 2361, 2396, 2464
Sau96I	GGNCC	4 cut(s)	965, 1061, 1943, 1997
ScaI	AGTACT	1 cut(s)	2209
SchI	GAGTC	6 cut(s)	72, 1160, 1601, 1702, 1937, 2231
SduI	GDGCHC	1 cut(s)	1363
SfaNI	GCATC	7 cut(s)	742, 1721, 1860, 1894, 1979, 2029, 2411
SfcI	CTRYAG	4 cut(s)	229, 801, 971, 1911
SfuI	TTCGAA	1 cut(s)	408
SinI	GGWCC	4 cut(s)	965, 1061, 1943, 1997
SmiMI	CAYNNNNRTG	2 cut(s)	494, 2234
SmlI	CTYRAG	2 cut(s)	1466, 2474
SmoI	CTYRAG	2 cut(s)	1466, 2474
SphI	GCATGC	1 cut(s)	1121
SseBI	AGGCCT	1 cut(s)	950
SspI	AATATT	2 cut(s)	1951, 2289
SspMI	CTAG	5 cut(s)	768, 1182, 1242, 1326, 2367
StuI	AGGCCT	1 cut(s)	950
StyI	CCWWGG	5 cut(s)	767, 1093, 1220, 1241, 2526
TaaI	ACNGT	5 cut(s)	212, 813, 876, 1780, 1792
TaiI	ACGT	5 cut(s)	498, 1348, 1972, 2200, 2272
TaqI	TCGA	8 cut(s)	408, 483, 1380, 1573, 1654, 1879, 1987, 2445
TatI	WGTACW	2 cut(s)	486, 2207
TauI	GCSGC	2 cut(s)	132, 690
TfiI	GAWTC	6 cut(s)	51, 427, 1001, 1651, 2033, 2515
Tru1I	TTAA	8 cut(s)	5, 776, 897, 996, 1467, 2133, 2411, 2475
Tru9I	TTAA	8 cut(s)	5, 776, 897, 996, 1467, 2133, 2411, 2475
TscAI	CASTG	4 cut(s)	496, 1297, 1860, 2512
TseFI	GTSAC	7 cut(s)	97, 536, 733, 793, 1427, 1754, 1855
TseI	GCWGC	4 cut(s)	115, 295, 917, 1685
Tsp45I	GTSAC	7 cut(s)	97, 536, 733, 793, 1427, 1754, 1855
TspGWI	ACGGA	6 cut(s)	85, 248, 626, 1425, 1475, 1531
TspRI	CASTG	4 cut(s)	496, 1297, 1860, 2512
Vha464I	CTTAAG	2 cut(s)	1466, 2474
VpaK11BI	GGWCC	4 cut(s)	965, 1061, 1943, 1997
XagI	CCTNNNNNAGG	1 cut(s)	1055
XapI	RAATTY	4 cut(s)	957, 1193, 1581, 2543
XbaI	TCTAGA	1 cut(s)	1181
XceI	RCATGY	2 cut(s)	1121, 2020
XcmI	CCANNNNNNNNNTGG	2 cut(s)	472, 1504
XmaJI	CCTAGG	2 cut(s)	767, 1241
XmnI	GAANNNNTTC	3 cut(s)	399, 1569, 2543
XspI	CTAG	5 cut(s)	768, 1182, 1242, 1326, 2367
ZrmI	AGTACT	1 cut(s)	2209
Zsp2I	ATGCAT	2 cut(s)	1887, 2022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.