Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003781

Physical Location & Seq

Genomic Coordinates Reverse (-)

35635870 .. 35647307

Gene Structure 11438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGGCTGTGGAGATAGACAAGCTTCTCCCCGATGAAGCTGCTTGCATAGCCCGTTTCTACCGGATTGTTCTCAGTTGGGACTTCTTCCGCATAACCCAGGAAGCCGACAAAAGAAATAAGGAAAAGGATAAGATAGATGAGAGCTTGGGATTTGGACATGTCAAGGACAGTTACACAGACGTTGATGACTATATTTCTACTTACGAGCCTCTTATTTTCGAAGAAATCAAAGCTGAGATTGCTTCCAACAAGGATCAGTTGGGAACAGGCAAGACAACCTGTGTGACGGAATGCAAGGAAGAGGATGGGTTTTACATGGCTACTGTTTTTGTTGACTTGGATGATGGCCATGATGAACAGACAAAAGTGAAGCCCTATGATCTTTTTCTGTTGTCCAAACCACTTTGGTCCAAACAAACGGTTCCAGAGGAGAATTCTTATAAGAAATATGCATTTGCATTGGTGGAAAGTCGCACAAAAGAATCTATAAAGCTTAGAATGTATTTGGCCGGACAAGTCAGAGATTTGAATACAGATGCAATTCAATATTGTCCAAGGCTGGCACAAGTGCGGTCATTGATTACTTCTAATGGTGAAGGAGACAGGCTTTTTGACGTTACCAAGATTTGCAGTTTATCTACTACTGCTCGTGAATATATAGCGTTGCGGTCAATTGGTTCTCTCCCTTTTAAGGATTTGATACTTGCACCTTCTGAGAAAAATCTTGATGCGGAAGACCAAGCCTGGAAAGTTTCTGGACCTCTTGAGGAATATATAAAAGACAATCTTAATGAATCTCAACAAAAAGCCATACAGGCCGGTCTATCACGGAAACCATTCATCCTTATACAGGGTCCTCCAGGAACAGGAAAGACACAGACTATCCTTGCGCTTCTTAGTGCCATTCTGCATGCTACTCCTGCAAGAGTAAAAGCCAGGGTTGCACTGCTAGACATAAAGCATCAGCAGAAGTTATCTATTCAGGAGAAATTCAATCATTGGCGACTATCGTCTCCCTGGCTTAGTGGTAGCAACCCTAGAGAGAAAATAATGCCTGTCAATGGCGATGATGGTTTTTTTCCAACCACTGGAAATGAGTTAAAACCGGAAGTAGTCAGTTCTACCCGTAAATATCGTGTACGTGTCCTTGTCTGTGCTCCTTCAAACTCTGCACTCGATGAGATTGTATTGCGTGTTATGAACAATGGTGTGCGGGATGAAAGTGACCGTTCATATAGTCCCAAAATTGTGCGGATTGGGGTCAAGGAACATCATTCTATCCGATCTGTCTCTATAAATGAGCTGGTACAAAGAAAGAAAGGAAGTATGGGGGGTGCTAAACTAGATGGAGGTGATGAAGCACTTCGAGCTGCAATTTTGGAGGAGGCTGTAATTGTCTTCTCGACCCTCAGTAGCAGTGGTTCAGCCCATTTCGGTAAATTTGATCGTGGTTTTGATGTTGTTATAATAGATGAAGCTGCACAGGCTGTTGAACCCGCGACTCTTGTTCCATTGGCGAATGGATGCAAACAAGTATTTCTGATAGGTGACCCTGTTCAACTGCCCGCTACTGTAAAGTCTCCCGTTGCTGTGAAATTTGGGTATGGAAGGAGTATGTTCGAGAGATTTCAGCAGGCTGGATATCCAGTGACCATGCTGAAGATGCAGTATCGTATGCATCCAGAGATCAGAAGCTTTCCTTCTGGAGAGTTTTATGCAGACTCATTGGAAGATGGTCCTAATATCAGAGAGCAGACAAAGCGTTCATGGCATGAGTATAGCTGCTTTGGACCATTTTGCTTCTTTGACTTGCATGAAGGGAAATCAGTCAAGCCTCAGGCAAGTGGATCTTGGGTGAATGCTGATGAGGTTGAATTTGTCTTGAACTTGTATCACAAGTTGGTGAGCCGATATCCAGAGCTTAAATCTAGTAATCAATTTGCAATTATAACTACTTACCGTGCACAAGTAGATCTCTTGAAAGAACGTTTCAAAAGTACTTTCGGAGTGGACTCTGAGAAAGAAGTGGAAATCACTACTGTTGATGGTTGCCAGGGACGTGAAAAGGTTGTTGCAATATTTTCTTGTGTCAGGGCAAGCAAGGAAGGAGGAATTGGGTTTGTGGAAGATTTTCGGCGAATGAATGTTGGGATTACTAGAGCAAAAGCATCTATCCTGGTGGTTGGATCTGCATCAACATTGAGGAGGAGTGATAGCCATTGGAATAACCTAGTGGAAAATGCTGAAAAGAGACAATGCTTAATTAAGGTTTCGAAGCCATATACCGCGTTTTTCAGTGATGAGAGTCTGGAATCTATGAGAACCAAGGAAGAAATCTTGCCAAGCGAGGAAGTTCAAAATGATGAATTAGATTACAGCATGCCTACCTACACTGTTGGGGATGCTGATGAAGTGCAGGGAGATGACAATGGCTATGGTGACGGGGACGAGATGGACATGGATGATGGAGGTTTTGGAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007154 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009875 GO:0009987 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

829

Amino Acids

92.75

Weight (kDa)

5.34

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_11	PF13086	262 - 440	1.5e-25	AAA domain
AAA_11	PF13086	446 - 527	1.5e-28	AAA domain
AAA_12	PF13087	535 - 731	5.3e-61	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15570 AT4G15570 AT4G15570 AT4G15570
fragaria_vesca	FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281
malus_domestica	MD15G1420100.v1.1 MD15G1420400.v1.1
prunus_persica	Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1
pyrus_communis	pycom15g37290
rosa_chinensis	RchiOBHm_Chr4g0407481
rosa_laevigata	RLG00000008716
rosa_multiflora	Rmu_sc0004841.1_g000016
rosa_roxburghii	Rroxscaffold_5G00352130
rosa_rugosa	Rorug04G0080000
rosa_samantha	Rh4AG144700 Rh4BG142600 Rh4CG151400 Rh4DG138600
rosa_wichuraiana	Rw4G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	441, 1466, 1949
AccB7I	CCANNNNNTGG	1 cut(s)	1088
AccII	CGCG	2 cut(s)	1499, 2288
AciI	CCGC	9 cut(s)	88, 571, 667, 731, 1213, 1252, 1497, 1566, 2286
AclI	AACGTT	1 cut(s)	1987
AclWI	GGATC	3 cut(s)	261, 1855, 2194
AcoI	YGGCCR	2 cut(s)	346, 507
AcsI	RAATTY	5 cut(s)	433, 989, 1439, 1595, 1874
AcuI	CTGAAG	1 cut(s)	1679
AfaI	GTAC	3 cut(s)	1140, 1308, 1999
AfiI	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
AflIII	ACRYGT	2 cut(s)	157, 1141
AjiI	CACGTC	1 cut(s)	2060
AjnI	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
AjuI	GAANNNNNNNTTGG	2 cut(s)	2097, 2129
Alw21I	GWGCWC	2 cut(s)	1159, 1966
Alw26I	GTCTC	5 cut(s)	594, 1017, 1294, 1584, 2245
Alw44I	GTGCAC	1 cut(s)	1962
AlwI	GGATC	3 cut(s)	261, 1855, 2194
AoxI	GGCC	3 cut(s)	346, 507, 816
ApaLI	GTGCAC	1 cut(s)	1962
ApeKI	GCWGC	4 cut(s)	38, 1370, 1478, 1782
ApoI	RAATTY	5 cut(s)	433, 989, 1439, 1595, 1874
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp700I	GAANNNNTTC	3 cut(s)	836, 1362, 2130
AspLEI	GCGC	1 cut(s)	892
AspS9I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
AsuHPI	GGTGA	6 cut(s)	605, 1364, 1559, 1867, 1915, 2450
AsuII	TTCGAA	2 cut(s)	219, 2273
AvaII	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
AxyI	CCTNAGG	1 cut(s)	1836
BaeGI	GKGCMC	1 cut(s)	1966
BalI	TGGCCA	1 cut(s)	348
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	2 cut(s)	741, 1390
Bbv12I	GWGCWC	2 cut(s)	1159, 1966
BbvI	GCAGC	4 cut(s)	25, 1357, 1465, 1769
BccI	CCATC	8 cut(s)	299, 338, 1064, 1340, 1727, 2039, 2446, 2459
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BcoDI	GTCTC	5 cut(s)	594, 1017, 1294, 1584, 2245
BfaI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
BglI	GCCNNNNNGGC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	1972
BisI	GCNGC	4 cut(s)	39, 1371, 1479, 1783
BlsI	GCNGC	4 cut(s)	40, 1372, 1480, 1784
BmcAI	AGTACT	1 cut(s)	1999
Bme1390I	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
Bme18I	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
BmgBI	CACGTC	1 cut(s)	2060
BmgT120I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
BmiI	GGNNCC	2 cut(s)	423, 855
BmrFI	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BmsI	GCATC	9 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201, 2392
BoxI	GACNNNNGTC	1 cut(s)	1009
BpiI	GAAGAC	2 cut(s)	741, 1390
BpmI	CTGGAG	2 cut(s)	843, 1725
Bpu14I	TTCGAA	2 cut(s)	219, 2273
BpuEI	CTTGAG	1 cut(s)	785
BsaAI	YACGTR	1 cut(s)	1142
BsaBI	GATNNNNATC	1 cut(s)	2191
BsaJI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 2053, 2325
BsaWI	WCCGGW	2 cut(s)	60, 1105
Bsc4I	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	2 cut(s)	1093, 1646
Bse21I	CCTNAGG	1 cut(s)	1836
Bse8I	GATNNNNATC	1 cut(s)	2191
BseBI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BseDI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 2053, 2325
BseGI	GGATG	8 cut(s)	310, 346, 840, 1222, 1529, 1678, 2407, 2467
BseJI	GATNNNNATC	1 cut(s)	2191
BseLI	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
BseMII	CTCAG	6 cut(s)	85, 225, 705, 1423, 1850, 2007
BseNI	ACTGG	2 cut(s)	1093, 1646
BseRI	GAGGAG	4 cut(s)	443, 1397, 2218, 2221
BseSI	GKGCMC	1 cut(s)	1966
BseXI	GCAGC	4 cut(s)	25, 1357, 1465, 1769
BsgI	GTGCAG	3 cut(s)	1155, 1464, 2435
Bsh1236I	CGCG	2 cut(s)	1499, 2288
BshFI	GGCC	3 cut(s)	348, 509, 818
BsiHKAI	GWGCWC	2 cut(s)	1159, 1966
BsiSI	CCGG	4 cut(s)	61, 510, 819, 1106
BslFI	GGGAC	4 cut(s)	92, 1224, 2070, 2459
BslI	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
BsmAI	GTCTC	5 cut(s)	594, 1017, 1294, 1584, 2245
BsmBI	CGTCTC	1 cut(s)	1017
BsmFI	GGGAC	4 cut(s)	92, 1224, 2070, 2459
BsmI	GAATGC	2 cut(s)	296, 1864
BsnI	GGCC	3 cut(s)	348, 509, 818
Bsp119I	TTCGAA	2 cut(s)	219, 2273
Bsp1286I	GDGCHC	2 cut(s)	1159, 1966
Bsp143I	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BspACI	CCGC	9 cut(s)	88, 571, 667, 731, 1213, 1252, 1497, 1566, 2286
BspANI	GGCC	3 cut(s)	348, 509, 818
BspCNI	CTCAG	6 cut(s)	84, 226, 706, 1422, 1849, 2008
BspFNI	CGCG	2 cut(s)	1499, 2288
BspLI	GGNNCC	2 cut(s)	423, 855
BspPI	GGATC	3 cut(s)	261, 1855, 2194
BspT104I	TTCGAA	2 cut(s)	219, 2273
BsrFI	RCCGGY	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	1093, 1646
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 2053, 2325
BssMI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	2 cut(s)	554, 2325
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
Bst4CI	ACNGT	8 cut(s)	170, 325, 421, 1229, 1573, 1961, 2041, 2395
Bst6I	CTCTTC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	1142
BstBI	TTCGAA	2 cut(s)	219, 2273
BstC8I	GCNNGC	7 cut(s)	43, 561, 912, 1566, 1635, 2098, 2381
BstDEI	CTNAG	9 cut(s)	71, 234, 494, 714, 896, 1022, 1409, 1836, 2016
BstEII	GGTNACC	1 cut(s)	1547
BstENI	CCTNNNNNAGG	1 cut(s)	848
BstF5I	GGATG	8 cut(s)	310, 346, 840, 1222, 1529, 1678, 2407, 2467
BstFNI	CGCG	2 cut(s)	1499, 2288
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	8 cut(s)	256, 382, 1286, 1447, 1689, 1850, 1975, 2189
BstMAI	GTCTC	5 cut(s)	594, 1017, 1294, 1584, 2245
BstMBI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BstNI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BstNSI	RCATGY	3 cut(s)	161, 914, 2383
BstPAI	GACNNNNGTC	1 cut(s)	1009
BstPI	GGTNACC	1 cut(s)	1547
BstSCI	CCNGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
BstSLI	GKGCMC	1 cut(s)	1966
BstUI	CGCG	2 cut(s)	1499, 2288
BstV1I	GCAGC	4 cut(s)	25, 1357, 1465, 1769
BstV2I	GAAGAC	2 cut(s)	741, 1390
BstX2I	RGATCY	3 cut(s)	1847, 1972, 2186
BstYI	RGATCY	3 cut(s)	1847, 1972, 2186
Bsu36I	CCTNAGG	1 cut(s)	1836
BsuRI	GGCC	3 cut(s)	348, 509, 818
BtgZI	GCGATG	1 cut(s)	1080
BtrI	CACGTC	1 cut(s)	2060
BtsCI	GGATG	8 cut(s)	310, 346, 840, 1222, 1529, 1678, 2407, 2467
BtsI	GCAGTG	2 cut(s)	944, 1423
BtsIMutI	CAGTG	6 cut(s)	944, 1086, 1423, 1653, 2302, 2391
Cac8I	GCNNGC	7 cut(s)	43, 561, 912, 1566, 1635, 2098, 2381
CfoI	GCGC	1 cut(s)	892
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
Csp6I	GTAC	3 cut(s)	1139, 1307, 1998
CviQI	GTAC	3 cut(s)	1139, 1307, 1998
DdeI	CTNAG	9 cut(s)	71, 234, 494, 714, 896, 1022, 1409, 1836, 2016
DpnI	GATC	8 cut(s)	255, 381, 1285, 1446, 1688, 1849, 1974, 2188
DpnII	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
EaeI	YGGCCR	2 cut(s)	346, 507
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	554, 2325
Eco32I	GATATC	2 cut(s)	1643, 1913
Eco47I	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
Eco57I	CTGAAG	1 cut(s)	1679
Eco81I	CCTNAGG	1 cut(s)	1836
Eco91I	GGTNACC	1 cut(s)	1547
EcoNI	CCTNNNNNAGG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	854
EcoO65I	GGTNACC	1 cut(s)	1547
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
EcoRV	GATATC	2 cut(s)	1643, 1913
EcoT14I	CCWWGG	2 cut(s)	554, 2325
EcoT22I	ATGCAT	2 cut(s)	454, 1680
ErhI	CCWWGG	2 cut(s)	554, 2325
Esp3I	CGTCTC	1 cut(s)	1017
FalI	AAGNNNNNCTT	6 cut(s)	771, 803, 1684, 1716, 1834, 1866
FaqI	GGGAC	4 cut(s)	92, 1224, 2070, 2459
FauI	CCCGC	3 cut(s)	1206, 1504, 1573
Fnu4HI	GCNGC	4 cut(s)	39, 1371, 1479, 1783
FokI	GGATG	8 cut(s)	317, 353, 827, 1229, 1536, 1665, 2414, 2474
Fsp4HI	GCNGC	4 cut(s)	39, 1371, 1479, 1783
FspBI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	4 cut(s)	39, 1371, 1479, 1783
GsuI	CTGGAG	2 cut(s)	843, 1725
HaeIII	GGCC	3 cut(s)	348, 509, 818
HapII	CCGG	4 cut(s)	61, 510, 819, 1106
HhaI	GCGC	1 cut(s)	892
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	3 cut(s)	20, 491, 1693
HinfI	GANTC	7 cut(s)	482, 794, 1501, 1721, 2012, 2305, 2312
HpaII	CCGG	4 cut(s)	61, 510, 819, 1106
HphI	GGTGA	6 cut(s)	605, 1364, 1559, 1867, 1915, 2450
Hpy166II	GTNNAC	4 cut(s)	334, 1139, 1964, 2011
Hpy188I	TCNGA	8 cut(s)	521, 715, 1283, 1542, 1691, 1748, 2006, 2017
Hpy8I	GTNNAC	4 cut(s)	334, 1139, 1964, 2011
HpyAV	CCTTC	7 cut(s)	590, 720, 1170, 1602, 1710, 1811, 2099
HpyCH4III	ACNGT	8 cut(s)	170, 325, 421, 1229, 1573, 1961, 2041, 2395
HpyCH4IV	ACGT	5 cut(s)	180, 615, 1141, 1987, 2059
HpyF3I	CTNAG	9 cut(s)	71, 234, 494, 714, 896, 1022, 1409, 1836, 2016
HpySE526I	ACGT	5 cut(s)	180, 615, 1141, 1987, 2059
HspAI	GCGC	1 cut(s)	890
Kzo9I	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
LmnI	GCTCC	1 cut(s)	1162
Lsp1109I	GCAGC	4 cut(s)	25, 1357, 1465, 1769
LweI	GCATC	9 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201, 2392
MaeI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
MaeII	ACGT	5 cut(s)	180, 615, 1141, 1987, 2059
MaeIII	GTNAC	7 cut(s)	170, 283, 616, 1223, 1547, 1648, 2438
MalI	GATC	8 cut(s)	255, 381, 1285, 1446, 1688, 1849, 1974, 2188
MboI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
MboII	GAAGA	9 cut(s)	76, 233, 311, 746, 1390, 1672, 1742, 2138, 2342
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	3 cut(s)	1847, 1972, 2186
MhlI	GDGCHC	2 cut(s)	1159, 1966
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	4 cut(s)	1495, 1715, 2006, 2314
MmeI	TCCRAC	3 cut(s)	270, 1106, 2164
Mox20I	TGGCCA	1 cut(s)	348
Mph1103I	ATGCAT	2 cut(s)	454, 1680
MroXI	GAANNNNTTC	3 cut(s)	836, 1362, 2130
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	6 cut(s)	690, 789, 1100, 1923, 2261, 2265
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	4 cut(s)	61, 510, 819, 1106
MspR9I	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	2 cut(s)	296, 1864
MvaI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
MvnI	CGCG	2 cut(s)	1499, 2288
NdeII	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
NlaIV	GGNNCC	2 cut(s)	423, 855
NmuCI	GTSAC	5 cut(s)	283, 1223, 1547, 1648, 2438
NsiI	ATGCAT	2 cut(s)	454, 1680
NspI	RCATGY	3 cut(s)	161, 914, 2383
NspV	TTCGAA	2 cut(s)	219, 2273
PacI	TTAATTAA	1 cut(s)	2265
PaeI	GCATGC	2 cut(s)	914, 2383
PciI	ACATGT	1 cut(s)	157
PctI	GAATGC	2 cut(s)	296, 1864
PdmI	GAANNNNTTC	3 cut(s)	836, 1362, 2130
PfeI	GAWTC	3 cut(s)	482, 794, 2312
PflMI	CCANNNNNTGG	1 cut(s)	1088
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	4 cut(s)	40, 1372, 1480, 1784
PleI	GAGTC	4 cut(s)	1495, 1715, 2006, 2313
PpsI	GAGTC	4 cut(s)	1495, 1715, 2006, 2313
Ppu21I	YACGTR	1 cut(s)	1142
PpuMI	RGGWCCY	1 cut(s)	854
PscI	ACATGT	1 cut(s)	157
PshAI	GACNNNNGTC	1 cut(s)	1009
PsiI	TTATAA	3 cut(s)	441, 1466, 1949
Psp1406I	AACGTT	1 cut(s)	1987
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
PspEI	GGTNACC	1 cut(s)	1547
PspGI	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
PspN4I	GGNNCC	2 cut(s)	423, 855
PspPI	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
PspPPI	RGGWCCY	1 cut(s)	854
PsrI	GAACNNNNNNTAC	2 cut(s)	1405, 1437
PsuI	RGATCY	3 cut(s)	1847, 1972, 2186
RsaI	GTAC	3 cut(s)	1140, 1308, 1999
RsaNI	GTAC	3 cut(s)	1139, 1307, 1998
SaqAI	TTAA	6 cut(s)	690, 789, 1100, 1923, 2261, 2265
SatI	GCNGC	4 cut(s)	39, 1371, 1479, 1783
Sau3AI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
Sau96I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
ScaI	AGTACT	1 cut(s)	1999
SchI	GAGTC	4 cut(s)	1495, 1715, 2006, 2314
ScrFI	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
SduI	GDGCHC	2 cut(s)	1159, 1966
SfaNI	GCATC	9 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201, 2392
SfuI	TTCGAA	2 cut(s)	219, 2273
SinI	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SphI	GCATGC	2 cut(s)	914, 2383
SsiI	CCGC	9 cut(s)	88, 571, 667, 731, 1213, 1252, 1497, 1566, 2286
SspI	AATATT	2 cut(s)	548, 2079
SspMI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
StyD4I	CCNGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
StyI	CCWWGG	2 cut(s)	554, 2325
TaaI	ACNGT	8 cut(s)	170, 325, 421, 1229, 1573, 1961, 2041, 2395
TaiI	ACGT	5 cut(s)	183, 618, 1144, 1990, 2062
TaqI	TCGA	6 cut(s)	219, 1176, 1366, 1403, 1620, 2273
TatI	WGTACW	1 cut(s)	1997
TfiI	GAWTC	3 cut(s)	482, 794, 2312
Tru1I	TTAA	6 cut(s)	690, 789, 1100, 1923, 2261, 2265
Tru9I	TTAA	6 cut(s)	690, 789, 1100, 1923, 2261, 2265
TscAI	CASTG	6 cut(s)	951, 1093, 1423, 1653, 2302, 2398
TseFI	GTSAC	5 cut(s)	283, 1223, 1547, 1648, 2438
TseI	GCWGC	4 cut(s)	38, 1370, 1478, 1782
Tsp45I	GTSAC	5 cut(s)	283, 1223, 1547, 1648, 2438
TspGWI	ACGGA	2 cut(s)	302, 844
TspRI	CASTG	6 cut(s)	951, 1093, 1423, 1653, 2302, 2398
Van91I	CCANNNNNTGG	1 cut(s)	1088
VneI	GTGCAC	1 cut(s)	1962
VpaK11BI	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
XagI	CCTNNNNNAGG	1 cut(s)	848
XapI	RAATTY	5 cut(s)	433, 989, 1439, 1595, 1874
XceI	RCATGY	3 cut(s)	161, 914, 2383
XmnI	GAANNNNTTC	3 cut(s)	836, 1362, 2130
XspI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
ZrmI	AGTACT	1 cut(s)	1999
Zsp2I	ATGCAT	2 cut(s)	454, 1680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.