Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003781

Physical Location & Seq

Genomic Coordinates Forward (+)

29058665 .. 29070445

Gene Structure 11781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGCTGTGGAGATAGACAAGCTTCTCCCCGATGAAGCTGCTTGCATAGCCCGTTTCTACCGGATTAAAAGAAATAAGGAAAAGGATAAGATAGATGAGAGCTTGGGATTTGGACAAGTCAAGGACAGTTACACAGACGTTGATGACTATATCTCTACTTACGAGCCTCTTATTTTCGAAGAAATCAAAGCTGAGATTGCTTCCAACAAGGATCAGTTGGGAACAGGCAAGACAACCTGTGTGACGGAATGCAAGGAAGAGGATGGGTTTTACATGGCTACTGTTTTTGTTGACTTGGATGATGGCCATGATGAACAGACAAAAGTGAAGCCCAATGATCTTTTTCTGTTGTCCAAACCACTTTGGTCCAAACAAACGGTTCCAGAGGAGAATTCATATAAGAAATACGCATTTGCTTTGGTGGAAAGTCGCACAAAAGAATCTATAAAGCTTAGAATGTATTTGGCTGGAGAAGTCAGAGACTTGAATACAGATGCAATTCAATATTGTCCAAGGCTGGCACAAGTGCGGTCATTGGTTACTTCTAATGGTGAAGGAGACAGGCTTTTTGATGTTACAAAGATTTGCAGTTTATCTACTACTGCTCGTGAATATATAGCTTTGCGGTCAGTTGGTTCTCTCCCTTTTAAGGATTTGATACTTGCACCTTCTGAGAAAAATCTTGATGCGGAAGACCAAGCCTGGAAAGTTTCTGGACCTCTTGAGGAATATATAAAAGACAATCTTAATGAATCTCAACAAAAAGCCATACAGGCCGGTCTATCACGAAAACCATTCATCCTGATACAGGGTCCTCCAGGAACAGGAAAGACACAGACCATCCTTGCGCTTCTTAGTGCCATTCTGCATGCTACTCCTGCAAGAGTAAAAGCCAGGGTTGCACTGCTAGACATAAAGCATCAGCAGAAGTTATCTATTCAGGAGAAATTCAATCATTGGCGACTAGCGTCTCCCTGGCTTAGCGGTAGCAACCCTAGAGAGAAAATAATGCCTGTTAATGGCGATGATGGTTTTTTTCCAACCACTGGAAATGAGTTAAAACCAGAAGTAGTCAGTTCTACCCGTAAATATCGTGTTCGTGTCCTTGTCTGTGCTCCTTCAAACTCTGCACTCGATGAGATTGTATTGCGTGTTATGAACAATGGTGTGCGGGATGAAAGTGGCCGTTCATATAGTCCCAAAATTGTGCGGATTGGGGTCAAGGAACATCATTCTATCCGATCTGTCTCCATAAATGAGCTGGTACAAAGAAGGAAAGGAAGTATGGGGAGTGCTAAACTAGATGGAGGTGATGAAGCACTTCGAGCTGTAATTTTGGAGGAGGCCGTAATTGTCTTCTCGACCCTTAGTAGCAGTGGTTCAGCCCATTTCGGTAAATTTGATCGTGGTTTTGATGTTGTTATAATAGATGAAGCTGCACAGGCTGTTGAACCCGCGACTCTTGTTCCATTGGCGAACGGATGCAAACAAATATTTCTGATCGGTGACCCTGTTCAACTGCCTGCTACTGTAAAGTCTCCTGTTGCTGTGAAATTTGGGTATGGACGGAGTATGTTCGAGAGATTTCAGCAGGCTGGATATCCAGTGACCATGCTGAAGATGCAGTATCGTATGCATCCAGAGATCAGAAGCTTTCCTTCTGGAGAGTTTTATGCAGACTCATTGGAAGATGGTCCTAATATCAGAGAGCAGACAACGAGTTCTTGGCATGAGTATAGCTGCTTTGGACCATTTTGCTTCTTTGACTTGCATGAAGGGAAATCAGTCAAGCCTCAGGCAAGTGGATCTTGGGTGAATGCTGATGAGGTTGAATTTGTCTTGAACTTGTATCACAAGTTGGTGAGCCGATATCCAGAGCTTAAATCTAGTAATCATTTTGCAATTATAACTACTTACCGTGCACAAGCAGATCTCTTGAAAGAACGTTTCAAAAGTACTTTCGGAGTGGACTCTGAGAAAGAAGTGGAAATCACTACTGTTGATGGTTGCCAGGGACGTGAAAAGGATGTTGCAATATTTTCTTGTGTCAGGGCAAGCAAGGAAGGAGGAATTGGGTTTGTGGAAGATTTTCGGCGAATGAATGTTGGGATTACTAGAGCAAAAGCATCTATCCTGGTGGTTGGATCTGCATCAACATTGAGGAGGAGTGATAGCCATTGGAATAACCTAGTGGAAAGCGCTGAAAAGAGACAATGCTTAATTAAGGTTTCAAAGCCATATACCGCGTTTTTCAGTGATGAGAGTCTGGAATCTATGAGAATCAAGGAAGAAATCATGCCAAGCGAGGAAGTTCAAAATGATGAATTAGATTACAGCATGCCTACCTACACTGTTGGGGATGCTGATGAAGTGCAGGGAGATGACAATGGCTATGGTGATGGGGACGAGATGGACATGGATGATGGAGGTTTTGGAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007154 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009875 GO:0009987 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

814

Amino Acids

90.89

Weight (kDa)

5.3

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_11	PF13086	248 - 426	2.6e-26	AAA domain
AAA_11	PF13086	432 - 513	7.1e-28	AAA domain
AAA_12	PF13087	521 - 717	3.1e-61	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15570 AT4G15570 AT4G15570 AT4G15570
fragaria_vesca	FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281
malus_domestica	MD15G1420100.v1.1 MD15G1420400.v1.1
prunus_persica	Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1
pyrus_communis	pycom15g37290
rosa_chinensis	RchiOBHm_Chr4g0407481
rosa_laevigata	RLG00000008716
rosa_multiflora	Rmu_sc0004841.1_g000016
rosa_roxburghii	Rroxscaffold_5G00352130
rosa_rugosa	Rorug04G0080000
rosa_samantha	Rh4AG144700 Rh4BG142600 Rh4CG151400 Rh4DG138600
rosa_wichuraiana	Rw4G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1424, 1907
AccB7I	CCANNNNNTGG	1 cut(s)	1046
AccII	CGCG	2 cut(s)	1457, 2246
AciI	CCGC	8 cut(s)	529, 625, 689, 984, 1171, 1210, 1455, 2244
AclI	AACGTT	1 cut(s)	1945
AclWI	GGATC	3 cut(s)	219, 1813, 2152
AcoI	YGGCCR	2 cut(s)	304, 1183
AcsI	RAATTY	5 cut(s)	391, 947, 1397, 1553, 1832
AcuI	CTGAAG	1 cut(s)	1637
AfaI	GTAC	2 cut(s)	1266, 1957
AfeI	AGCGCT	1 cut(s)	2200
AfiI	CCNNNNNNNGG	5 cut(s)	649, 808, 824, 1019, 1046
AjiI	CACGTC	1 cut(s)	2018
AjnI	CCWGG	6 cut(s)	701, 817, 893, 974, 2010, 2133
AjuI	GAANNNNNNNTTGG	2 cut(s)	2055, 2087
Alw21I	GWGCWC	2 cut(s)	1117, 1924
Alw26I	GTCTC	6 cut(s)	474, 552, 975, 1252, 1542, 2203
Alw44I	GTGCAC	1 cut(s)	1920
AlwI	GGATC	3 cut(s)	219, 1813, 2152
Aor51HI	AGCGCT	1 cut(s)	2200
AoxI	GGCC	4 cut(s)	304, 774, 1183, 1344
ApaLI	GTGCAC	1 cut(s)	1920
ApeKI	GCWGC	3 cut(s)	38, 1436, 1740
ApoI	RAATTY	5 cut(s)	391, 947, 1397, 1553, 1832
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
Asp700I	GAANNNNTTC	2 cut(s)	1320, 2088
AspLEI	GCGC	2 cut(s)	850, 2201
AspS9I	GGNCC	5 cut(s)	366, 716, 812, 1694, 1748
AsuHPI	GGTGA	6 cut(s)	563, 1322, 1517, 1825, 1873, 2408
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	5 cut(s)	366, 716, 812, 1694, 1748
AxyI	CCTNAGG	1 cut(s)	1794
BaeGI	GKGCMC	1 cut(s)	1924
BalI	TGGCCA	1 cut(s)	306
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	2 cut(s)	699, 1348
Bbv12I	GWGCWC	2 cut(s)	1117, 1924
BbvI	GCAGC	3 cut(s)	25, 1423, 1727
BceAI	ACGGC	2 cut(s)	1170, 1331
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
BcoDI	GTCTC	6 cut(s)	474, 552, 975, 1252, 1542, 2203
BfaI	CTAG	7 cut(s)	908, 965, 996, 1301, 1887, 2115, 2189
BfoI	RGCGCY	1 cut(s)	2202
BglI	GCCNNNNNGGC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	1930
BisI	GCNGC	3 cut(s)	39, 1437, 1741
BlpI	GCTNAGC	1 cut(s)	980
BlsI	GCNGC	3 cut(s)	40, 1438, 1742
BmcAI	AGTACT	1 cut(s)	1957
Bme1390I	CCNGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
Bme18I	GGWCC	5 cut(s)	366, 716, 812, 1694, 1748
BmgBI	CACGTC	1 cut(s)	2018
BmgT120I	GGNCC	5 cut(s)	366, 716, 812, 1694, 1748
BmiI	GGNNCC	2 cut(s)	381, 813
BmrFI	CCNGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
BmsI	GCATC	9 cut(s)	484, 676, 928, 1472, 1611, 1645, 2135, 2159, 2350
BoxI	GACNNNNGTC	1 cut(s)	967
BpiI	GAAGAC	2 cut(s)	699, 1348
BpmI	CTGGAG	3 cut(s)	489, 801, 1683
Bpu1102I	GCTNAGC	1 cut(s)	980
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	743
BsaBI	GATNNNNATC	1 cut(s)	2149
BsaJI	CCNNGG	4 cut(s)	512, 894, 974, 2011
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	5 cut(s)	649, 808, 824, 1019, 1046
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	2 cut(s)	1051, 1604
Bse21I	CCTNAGG	1 cut(s)	1794
Bse8I	GATNNNNATC	1 cut(s)	2149
BseBI	CCWGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
BseDI	CCNNGG	4 cut(s)	512, 894, 974, 2011
BseJI	GATNNNNATC	1 cut(s)	2149
BseLI	CCNNNNNNNGG	5 cut(s)	649, 808, 824, 1019, 1046
BseMII	CTCAG	4 cut(s)	183, 663, 1808, 1965
BseNI	ACTGG	2 cut(s)	1051, 1604
BseRI	GAGGAG	4 cut(s)	401, 1355, 2176, 2179
BseSI	GKGCMC	1 cut(s)	1924
BseXI	GCAGC	3 cut(s)	25, 1423, 1727
BsgI	GTGCAG	3 cut(s)	1113, 1422, 2393
Bsh1236I	CGCG	2 cut(s)	1457, 2246
BshFI	GGCC	4 cut(s)	306, 776, 1185, 1346
BsiHKAI	GWGCWC	2 cut(s)	1117, 1924
BsiSI	CCGG	2 cut(s)	61, 777
BslFI	GGGAC	3 cut(s)	1182, 2028, 2417
BslI	CCNNNNNNNGG	5 cut(s)	649, 808, 824, 1019, 1046
BsmAI	GTCTC	6 cut(s)	474, 552, 975, 1252, 1542, 2203
BsmBI	CGTCTC	1 cut(s)	975
BsmFI	GGGAC	3 cut(s)	1182, 2028, 2417
BsmI	GAATGC	2 cut(s)	254, 1822
BsnI	GGCC	4 cut(s)	306, 776, 1185, 1346
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	1117, 1924
Bsp143I	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
Bsp1720I	GCTNAGC	1 cut(s)	980
BspACI	CCGC	8 cut(s)	529, 625, 689, 984, 1171, 1210, 1455, 2244
BspANI	GGCC	4 cut(s)	306, 776, 1185, 1346
BspCNI	CTCAG	4 cut(s)	184, 664, 1807, 1966
BspFNI	CGCG	2 cut(s)	1457, 2246
BspLI	GGNNCC	2 cut(s)	381, 813
BspPI	GGATC	3 cut(s)	219, 1813, 2152
BspT104I	TTCGAA	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	2 cut(s)	1051, 1604
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	4 cut(s)	512, 894, 974, 2011
BssMI	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	512
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
Bst4CI	ACNGT	7 cut(s)	128, 283, 379, 1531, 1919, 1999, 2353
Bst6I	CTCTTC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	7 cut(s)	43, 519, 870, 1524, 1593, 2056, 2339
BstDEI	CTNAG	8 cut(s)	192, 452, 672, 854, 980, 1367, 1794, 1974
BstEII	GGTNACC	1 cut(s)	1505
BstENI	CCTNNNNNAGG	1 cut(s)	806
BstFNI	CGCG	2 cut(s)	1457, 2246
BstH2I	RGCGCY	1 cut(s)	2202
BstHHI	GCGC	2 cut(s)	850, 2201
BstKTI	GATC	9 cut(s)	214, 340, 1244, 1405, 1503, 1647, 1808, 1933, 2147
BstMAI	GTCTC	6 cut(s)	474, 552, 975, 1252, 1542, 2203
BstMBI	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 197, 773, 878, 899, 1325, 1442, 1621
BstNI	CCWGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
BstNSI	RCATGY	2 cut(s)	872, 2341
BstPAI	GACNNNNGTC	1 cut(s)	967
BstPI	GGTNACC	1 cut(s)	1505
BstSCI	CCNGG	6 cut(s)	701, 817, 893, 974, 2010, 2133
BstSLI	GKGCMC	1 cut(s)	1924
BstUI	CGCG	2 cut(s)	1457, 2246
BstV1I	GCAGC	3 cut(s)	25, 1423, 1727
BstV2I	GAAGAC	2 cut(s)	699, 1348
BstX2I	RGATCY	3 cut(s)	1805, 1930, 2144
BstYI	RGATCY	3 cut(s)	1805, 1930, 2144
Bsu36I	CCTNAGG	1 cut(s)	1794
BsuRI	GGCC	4 cut(s)	306, 776, 1185, 1346
BtgZI	GCGATG	1 cut(s)	1038
BtrI	CACGTC	1 cut(s)	2018
BtsI	GCAGTG	2 cut(s)	902, 1381
BtsIMutI	CAGTG	6 cut(s)	902, 1044, 1381, 1611, 2260, 2349
Cac8I	GCNNGC	7 cut(s)	43, 519, 870, 1524, 1593, 2056, 2339
CfoI	GCGC	2 cut(s)	850, 2201
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	5 cut(s)	366, 716, 812, 1694, 1748
CseI	GACGC	1 cut(s)	957
Csp6I	GTAC	2 cut(s)	1265, 1956
CviAII	CATG	9 cut(s)	274, 308, 869, 1612, 1730, 1772, 2296, 2338, 2416
CviQI	GTAC	2 cut(s)	1265, 1956
DdeI	CTNAG	8 cut(s)	192, 452, 672, 854, 980, 1367, 1794, 1974
DpnI	GATC	9 cut(s)	213, 339, 1243, 1404, 1502, 1646, 1807, 1932, 2146
DpnII	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
EaeI	YGGCCR	2 cut(s)	304, 1183
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	512
Eco32I	GATATC	2 cut(s)	1601, 1871
Eco47I	GGWCC	5 cut(s)	366, 716, 812, 1694, 1748
Eco47III	AGCGCT	1 cut(s)	2200
Eco57I	CTGAAG	1 cut(s)	1637
Eco81I	CCTNAGG	1 cut(s)	1794
Eco91I	GGTNACC	1 cut(s)	1505
EcoNI	CCTNNNNNAGG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	812
EcoO65I	GGTNACC	1 cut(s)	1505
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	6 cut(s)	701, 817, 893, 974, 2010, 2133
EcoRV	GATATC	2 cut(s)	1601, 1871
EcoT14I	CCWWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	1638
ErhI	CCWWGG	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	975
FaeI	CATG	9 cut(s)	277, 311, 872, 1615, 1733, 1775, 2299, 2341, 2419
FalI	AAGNNNNNCTT	6 cut(s)	729, 761, 1642, 1674, 1792, 1824
FaqI	GGGAC	3 cut(s)	1182, 2028, 2417
FatI	CATG	9 cut(s)	273, 307, 868, 1611, 1729, 1771, 2295, 2337, 2415
FauI	CCCGC	2 cut(s)	1164, 1462
Fnu4HI	GCNGC	3 cut(s)	39, 1437, 1741
Fsp4HI	GCNGC	3 cut(s)	39, 1437, 1741
FspBI	CTAG	7 cut(s)	908, 965, 996, 1301, 1887, 2115, 2189
GlaI	GCGC	2 cut(s)	849, 2200
GluI	GCNGC	3 cut(s)	39, 1437, 1741
GsuI	CTGGAG	3 cut(s)	489, 801, 1683
HaeII	RGCGCY	1 cut(s)	2202
HaeIII	GGCC	4 cut(s)	306, 776, 1185, 1346
HapII	CCGG	2 cut(s)	61, 777
HgaI	GACGC	1 cut(s)	957
HhaI	GCGC	2 cut(s)	850, 2201
Hin1II	CATG	9 cut(s)	277, 311, 872, 1615, 1733, 1775, 2299, 2341, 2419
Hin6I	GCGC	2 cut(s)	848, 2199
HinP1I	GCGC	2 cut(s)	848, 2199
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	3 cut(s)	20, 449, 1651
HinfI	GANTC	8 cut(s)	440, 752, 1459, 1679, 1970, 2263, 2270, 2280
HpaII	CCGG	2 cut(s)	61, 777
HphI	GGTGA	6 cut(s)	563, 1322, 1517, 1825, 1873, 2408
Hpy166II	GTNNAC	3 cut(s)	292, 1922, 1969
Hpy188I	TCNGA	8 cut(s)	479, 673, 1241, 1500, 1649, 1706, 1964, 1975
Hpy8I	GTNNAC	3 cut(s)	292, 1922, 1969
HpyAV	CCTTC	7 cut(s)	548, 678, 1128, 1266, 1668, 1769, 2057
HpyCH4III	ACNGT	7 cut(s)	128, 283, 379, 1531, 1919, 1999, 2353
HpyCH4IV	ACGT	3 cut(s)	138, 1945, 2017
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 197, 773, 878, 899, 1325, 1442, 1621
HpyF3I	CTNAG	8 cut(s)	192, 452, 672, 854, 980, 1367, 1794, 1974
HpySE526I	ACGT	3 cut(s)	138, 1945, 2017
Hsp92II	CATG	9 cut(s)	277, 311, 872, 1615, 1733, 1775, 2299, 2341, 2419
HspAI	GCGC	2 cut(s)	848, 2199
Kzo9I	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
LmnI	GCTCC	1 cut(s)	1120
Lsp1109I	GCAGC	3 cut(s)	25, 1423, 1727
LweI	GCATC	9 cut(s)	484, 676, 928, 1472, 1611, 1645, 2135, 2159, 2350
MaeI	CTAG	7 cut(s)	908, 965, 996, 1301, 1887, 2115, 2189
MaeII	ACGT	3 cut(s)	138, 1945, 2017
MaeIII	GTNAC	6 cut(s)	128, 241, 538, 574, 1505, 1606
MalI	GATC	9 cut(s)	213, 339, 1243, 1404, 1502, 1646, 1807, 1932, 2146
MboI	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
MboII	GAAGA	8 cut(s)	191, 269, 704, 1348, 1630, 1700, 2096, 2300
MflI	RGATCY	3 cut(s)	1805, 1930, 2144
MhlI	GDGCHC	2 cut(s)	1117, 1924
MlsI	TGGCCA	1 cut(s)	306
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	4 cut(s)	1453, 1673, 1964, 2272
MmeI	TCCRAC	3 cut(s)	228, 1064, 2122
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	1638
MroXI	GAANNNNTTC	2 cut(s)	1320, 2088
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	8 cut(s)	66, 648, 747, 1017, 1058, 1881, 2219, 2223
Msp20I	TGGCCA	1 cut(s)	306
MspI	CCGG	2 cut(s)	61, 777
MspR9I	CCNGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
Mva1269I	GAATGC	2 cut(s)	254, 1822
MvaI	CCWGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
MvnI	CGCG	2 cut(s)	1457, 2246
MwoI	GCNNNNNNNGC	8 cut(s)	47, 197, 773, 878, 899, 1325, 1442, 1621
NdeII	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
NlaIII	CATG	9 cut(s)	277, 311, 872, 1615, 1733, 1775, 2299, 2341, 2419
NlaIV	GGNNCC	2 cut(s)	381, 813
NmuCI	GTSAC	3 cut(s)	241, 1505, 1606
NsiI	ATGCAT	1 cut(s)	1638
NspI	RCATGY	2 cut(s)	872, 2341
NspV	TTCGAA	1 cut(s)	177
PacI	TTAATTAA	1 cut(s)	2223
PaeI	GCATGC	2 cut(s)	872, 2341
PctI	GAATGC	2 cut(s)	254, 1822
PdmI	GAANNNNTTC	2 cut(s)	1320, 2088
PfeI	GAWTC	4 cut(s)	440, 752, 2270, 2280
PflMI	CCANNNNNTGG	1 cut(s)	1046
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	3 cut(s)	40, 1438, 1742
PleI	GAGTC	4 cut(s)	1453, 1673, 1964, 2271
PpsI	GAGTC	4 cut(s)	1453, 1673, 1964, 2271
PpuMI	RGGWCCY	1 cut(s)	812
PshAI	GACNNNNGTC	1 cut(s)	967
PsiI	TTATAA	2 cut(s)	1424, 1907
Psp1406I	AACGTT	1 cut(s)	1945
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	6 cut(s)	701, 817, 893, 974, 2010, 2133
PspEI	GGTNACC	1 cut(s)	1505
PspGI	CCWGG	6 cut(s)	701, 817, 893, 974, 2010, 2133
PspN4I	GGNNCC	2 cut(s)	381, 813
PspPI	GGNCC	5 cut(s)	366, 716, 812, 1694, 1748
PspPPI	RGGWCCY	1 cut(s)	812
PsrI	GAACNNNNNNTAC	2 cut(s)	1363, 1395
PsuI	RGATCY	3 cut(s)	1805, 1930, 2144
RsaI	GTAC	2 cut(s)	1266, 1957
RsaNI	GTAC	2 cut(s)	1265, 1956
SaqAI	TTAA	8 cut(s)	66, 648, 747, 1017, 1058, 1881, 2219, 2223
SatI	GCNGC	3 cut(s)	39, 1437, 1741
Sau3AI	GATC	9 cut(s)	211, 337, 1241, 1402, 1500, 1644, 1805, 1930, 2144
Sau96I	GGNCC	5 cut(s)	366, 716, 812, 1694, 1748
ScaI	AGTACT	1 cut(s)	1957
SchI	GAGTC	4 cut(s)	1453, 1673, 1964, 2272
ScrFI	CCNGG	6 cut(s)	703, 819, 895, 976, 2012, 2135
SduI	GDGCHC	2 cut(s)	1117, 1924
SfaNI	GCATC	9 cut(s)	484, 676, 928, 1472, 1611, 1645, 2135, 2159, 2350
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	5 cut(s)	366, 716, 812, 1694, 1748
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SphI	GCATGC	2 cut(s)	872, 2341
SsiI	CCGC	8 cut(s)	529, 625, 689, 984, 1171, 1210, 1455, 2244
SspI	AATATT	3 cut(s)	506, 1494, 2037
SspMI	CTAG	7 cut(s)	908, 965, 996, 1301, 1887, 2115, 2189
StyD4I	CCNGG	6 cut(s)	701, 817, 893, 974, 2010, 2133
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	7 cut(s)	128, 283, 379, 1531, 1919, 1999, 2353
TaiI	ACGT	3 cut(s)	141, 1948, 2020
TaqI	TCGA	5 cut(s)	177, 1134, 1324, 1361, 1578
TatI	WGTACW	1 cut(s)	1955
TfiI	GAWTC	4 cut(s)	440, 752, 2270, 2280
Tru1I	TTAA	8 cut(s)	66, 648, 747, 1017, 1058, 1881, 2219, 2223
Tru9I	TTAA	8 cut(s)	66, 648, 747, 1017, 1058, 1881, 2219, 2223
TscAI	CASTG	6 cut(s)	909, 1051, 1381, 1611, 2260, 2356
TseFI	GTSAC	3 cut(s)	241, 1505, 1606
TseI	GCWGC	3 cut(s)	38, 1436, 1740
Tsp45I	GTSAC	3 cut(s)	241, 1505, 1606
TspGWI	ACGGA	3 cut(s)	260, 1494, 1582
TspRI	CASTG	6 cut(s)	909, 1051, 1381, 1611, 2260, 2356
Van91I	CCANNNNNTGG	1 cut(s)	1046
VneI	GTGCAC	1 cut(s)	1920
VpaK11BI	GGWCC	5 cut(s)	366, 716, 812, 1694, 1748
XagI	CCTNNNNNAGG	1 cut(s)	806
XapI	RAATTY	5 cut(s)	391, 947, 1397, 1553, 1832
XceI	RCATGY	2 cut(s)	872, 2341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1258
XmnI	GAANNNNTTC	2 cut(s)	1320, 2088
XspI	CTAG	7 cut(s)	908, 965, 996, 1301, 1887, 2115, 2189
ZrmI	AGTACT	1 cut(s)	1957
Zsp2I	ATGCAT	1 cut(s)	1638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.