Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003781

Physical Location & Seq

Genomic Coordinates Forward (+)

36663751 .. 36675912

Gene Structure 12162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGGCTGTGGAGATAGACAAGCTTCTCCCCGATGAAGCTGCTTGCATAGCCCGTTTCTACCGGATTGTTCTCAGTTGGGACTTCTTCCGCATAACCCAGGAAGCCGACAGAAGAAATAAGGAAAAGGATAAGATAGATGAGAGCTTGGGATTTGGACAAGTCAAGGACAGTTACACAGACATTGATGACTATATCTCTACTTACGAGCCTCTTATTTTCGAAGAAATCAAAGCTGAGATTGCTTCCAACAAGGATCAGTTGGGAACAGGCAAGACAACCTGTGTGACGAAATGCAAGGAAGAGGATGGGTTTTACATGGCTACTGTTTTTGTTGACTTGGATGGTGGCCATGATGAACAGACAAAAGTGAAGCCCTATGATCTTTTTCTGTTGTCGAAACCACTTTGGTCCAAACAAACGGTTCCAGAGGAGAATTCTTATAAGAAATATGCATTTGCAATGGTGGAAAGTCGCACAAAAGAATCTATAAAGCTTAGAATGTATTTGGCTGGAGAAGTCAGAGACTTGAATACAGATGCAATTCAATATTGTCCAAGGCTGGCACAAGTGCGGTCATTGGTTACTTCTAATGGTGAAGGAGACAGGCTTTTTGATGTTACAAAGATTTGCAGTTTATCTACTACTGCTCGTGAATATATAGCTTTGCGGTCAATTGGTTCTCTCCCTTTTAAGGATTTGATACTTGCACCTTCTGAGAAAAATCTTGATGCAGAAGACCAAGCCTGGAAAATTTCTGGACCTCTTGAGGAATATATAAAAGACAATCTTAATGAATCTCAACAAAAAGCCATACAGGCCGGTCTATCACGAAAACCATTCATCCTGATACAGGGTCCTCCAGGAACAGGAAAGACACAGACTATCCTTGCGCTTCTTAGTGTCATTCTGCATGCTACTCCTGCAACAGTAAAAGCCAGGGTTGCACTGCTAGACATAAAGCATCAGCAGAAGTTATCTATTCAGGAGAAATTCAATCATTGGCAACTGGCGTCTCCCTGGGTTAGTGGTAGCAACCCTAGAGAGAAAACAATGCCTGTTAATGGCGATGATGGTTTTTTTCCAACCACTGGAAATGAGTTAAAACCAGAAGTAGTCAGTTCTACCCGTAAATATCGTGTACGTGTCCTTGTCTGTGCTCCTTCAAACTCTGCACTCGATGAGATTGTATTGCGTGTTATGAACAATGGTGTGCGGGATGAAAGTGACCGTTCATATAGTCCCAAAATTGTGCGGATTGGGGTCAAGGAACATCATTCTATCCGATCTGTCTCCATAAATGAGCTGGTACAAAGAAAGAAAGGAAGCATGGGGGGTCCTAAACTAGATGGAGGTGATGAAGCACTTCGAGCTGTAATTTTGGAGGAGGCCGTAATTGTCTTCTCGACCCTCAGTAGCAGTGGTTCAGCCCATTTCGGTAAATTTGATCGTGGTTTTGATGTTCTTATAATAGATGAAGCTGCACAGGCTGTTGAACCCGCGACTCTTGTTCCATTGGCGAATGGATGCAAACAAGTATTTCTGATAGGTGACCCTGTTCAACTGCCCGCTACTGTAAAGTCTCCCATTGCTGTGAAATTTGGGTATGGAAGGAGTATGTTCGAGAGATTTCAGCGGGCTGGATATCCAGTGACCATGCTGAAGATGCAGTATCGTATGCATCCAGAGATCAGAAGCTTTCCTTCTGGAGAGTTTTATGCAGACTCATTGGAAGATGGTCCTAATATCAGAGAGCAGACAAAGCGTTCATGGCATGAGTATAGCTGCTTTGGACCATTTTGCTTCTTTGACTTGCATGAAGGGAAATCAGTCAAGCCTCAGGCAAGTGGATCTTGGGTGAATGCTGATGAGGTTGAATTTGTCTTGAACTTGTATCACAAGTTGGTGAGCCGATATCCAGAGCTTAAATCTAGTAATAATTTTGCAATTATAACTACTTACCGTGCACAAGTAGATCTCTTGAAAGAACGTTTCAAAAGTACTTTCGGAGTGGACTCTGAGAAAGAAGTGGAAATCACTACTGTTGATGGTTGCCAGGGACGTGAAAAGAATGTTGCAATATTTTCCTGTGTCAGGGCAAGCAAGGAAGGAGGAATTGGGTTTGTGGAAGATTTTCGGCGAATGAATGTTGGGATTACTAGAGCAAAAGCATCTATCCTGGTGGTTGGATCTGCATCAACATTGAGGAGGAGTGATAGCCATTGGAATAACCTAGTGGAAAGCGCTGAAAAGAGACAATGCTTAATTAAGGTGAATATCATTTTCAAGTATATGAAATCTCACATTGGACATTTTAAATCTTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007154 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009875 GO:0009987 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

775

Amino Acids

87.06

Weight (kDa)

8.05

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_11	PF13086	262 - 440	1.2e-25	AAA domain
AAA_11	PF13086	448 - 527	1.2e-27	AAA domain
AAA_12	PF13087	535 - 731	1.6e-61	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15570 AT4G15570 AT4G15570 AT4G15570
fragaria_vesca	FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_3g12391 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281 FvH4_4g11281
malus_domestica	MD15G1420100.v1.1 MD15G1420400.v1.1
prunus_persica	Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1 Prupe.1G566100_v2.0.a1
pyrus_communis	pycom15g37290
rosa_chinensis	RchiOBHm_Chr4g0407481
rosa_laevigata	RLG00000008716
rosa_multiflora	Rmu_sc0004841.1_g000016
rosa_roxburghii	Rroxscaffold_5G00352130
rosa_rugosa	Rorug04G0080000
rosa_samantha	Rh4AG144700 Rh4BG142600 Rh4CG151400 Rh4DG138600
rosa_wichuraiana	Rw4G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	441, 1466, 1949
AccB7I	CCANNNNNTGG	1 cut(s)	1088
AccII	CGCG	1 cut(s)	1499
AciI	CCGC	8 cut(s)	88, 571, 667, 1213, 1252, 1497, 1566, 1633
AclI	AACGTT	1 cut(s)	1987
AclWI	GGATC	3 cut(s)	261, 1855, 2194
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	6 cut(s)	433, 750, 989, 1439, 1595, 1874
AcuI	CTGAAG	1 cut(s)	1679
AcyI	GRCGYC	1 cut(s)	1010
AfaI	GTAC	3 cut(s)	1140, 1308, 1999
AfeI	AGCGCT	1 cut(s)	2242
AfiI	CCNNNNNNNGG	6 cut(s)	691, 850, 866, 1061, 1088, 2091
AflIII	ACRYGT	1 cut(s)	1141
AjiI	CACGTC	1 cut(s)	2060
AjnI	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
AjuI	GAANNNNNNNTTGG	2 cut(s)	2097, 2129
Alw21I	GWGCWC	2 cut(s)	1159, 1966
Alw26I	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
Alw44I	GTGCAC	1 cut(s)	1962
AlwI	GGATC	3 cut(s)	261, 1855, 2194
Aor51HI	AGCGCT	1 cut(s)	2242
AoxI	GGCC	3 cut(s)	346, 816, 1386
ApaLI	GTGCAC	1 cut(s)	1962
ApeKI	GCWGC	3 cut(s)	38, 1478, 1782
ApoI	RAATTY	6 cut(s)	433, 750, 989, 1439, 1595, 1874
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp700I	GAANNNNTTC	2 cut(s)	1362, 2130
AspLEI	GCGC	2 cut(s)	892, 2243
AspS9I	GGNCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
AsuHPI	GGTGA	6 cut(s)	605, 1364, 1559, 1867, 1915, 2281
AsuII	TTCGAA	1 cut(s)	219
AvaII	GGWCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
AxyI	CCTNAGG	1 cut(s)	1836
BaeGI	GKGCMC	1 cut(s)	1966
BalI	TGGCCA	1 cut(s)	348
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	2 cut(s)	741, 1390
Bbv12I	GWGCWC	2 cut(s)	1159, 1966
BbvI	GCAGC	3 cut(s)	25, 1465, 1769
BccI	CCATC	6 cut(s)	299, 335, 1064, 1340, 1727, 2039
BceAI	ACGGC	1 cut(s)	1373
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BcoDI	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
BfaI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
BfoI	RGCGCY	1 cut(s)	2244
BglI	GCCNNNNNGGC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	1972
BisI	GCNGC	3 cut(s)	39, 1479, 1783
BlsI	GCNGC	3 cut(s)	40, 1480, 1784
BmcAI	AGTACT	1 cut(s)	1999
Bme1390I	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
Bme18I	GGWCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
BmgBI	CACGTC	1 cut(s)	2060
BmgT120I	GGNCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
BmiI	GGNNCC	3 cut(s)	423, 855, 1335
BmrFI	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BmsI	GCATC	8 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201
BpiI	GAAGAC	2 cut(s)	741, 1390
BpmI	CTGGAG	3 cut(s)	531, 843, 1725
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	785
BsaAI	YACGTR	1 cut(s)	1142
BsaBI	GATNNNNATC	1 cut(s)	2191
BsaHI	GRCGYC	1 cut(s)	1010
BsaJI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 1017, 2053
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	6 cut(s)	691, 850, 866, 1061, 1088, 2091
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	3 cut(s)	1011, 1093, 1646
Bse21I	CCTNAGG	1 cut(s)	1836
Bse3DI	GCAATG	2 cut(s)	465, 1584
Bse8I	GATNNNNATC	1 cut(s)	2191
BseBI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BseDI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 1017, 2053
BseGI	GGATG	6 cut(s)	310, 346, 840, 1222, 1529, 1678
BseJI	GATNNNNATC	1 cut(s)	2191
BseLI	CCNNNNNNNGG	6 cut(s)	691, 850, 866, 1061, 1088, 2091
BseMI	GCAATG	2 cut(s)	465, 1584
BseMII	CTCAG	6 cut(s)	85, 225, 705, 1423, 1850, 2007
BseNI	ACTGG	3 cut(s)	1011, 1093, 1646
BseRI	GAGGAG	4 cut(s)	443, 1397, 2218, 2221
BseSI	GKGCMC	1 cut(s)	1966
BseXI	GCAGC	3 cut(s)	25, 1465, 1769
BsgI	GTGCAG	2 cut(s)	1155, 1464
Bsh1236I	CGCG	1 cut(s)	1499
BshFI	GGCC	3 cut(s)	348, 818, 1388
BsiHKAI	GWGCWC	2 cut(s)	1159, 1966
BsiSI	CCGG	2 cut(s)	61, 819
BslFI	GGGAC	3 cut(s)	92, 1224, 2070
BslI	CCNNNNNNNGG	6 cut(s)	691, 850, 866, 1061, 1088, 2091
BsmAI	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
BsmBI	CGTCTC	1 cut(s)	1017
BsmFI	GGGAC	3 cut(s)	92, 1224, 2070
BsmI	GAATGC	1 cut(s)	1864
BsnI	GGCC	3 cut(s)	348, 818, 1388
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	1159, 1966
Bsp143I	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BspACI	CCGC	8 cut(s)	88, 571, 667, 1213, 1252, 1497, 1566, 1633
BspANI	GGCC	3 cut(s)	348, 818, 1388
BspCNI	CTCAG	6 cut(s)	84, 226, 706, 1422, 1849, 2008
BspFNI	CGCG	1 cut(s)	1499
BspLI	GGNNCC	3 cut(s)	423, 855, 1335
BspPI	GGATC	3 cut(s)	261, 1855, 2194
BspT104I	TTCGAA	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	465, 1584
BsrFI	RCCGGY	1 cut(s)	818
BsrI	ACTGG	3 cut(s)	1011, 1093, 1646
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 1017, 2053
BssMI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BssNI	GRCGYC	1 cut(s)	1010
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
Bst4CI	ACNGT	8 cut(s)	170, 325, 421, 928, 1229, 1573, 1961, 2041
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	1010
BstBAI	YACGTR	1 cut(s)	1142
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	6 cut(s)	43, 561, 912, 1566, 1635, 2098
BstDEI	CTNAG	8 cut(s)	71, 234, 494, 714, 896, 1409, 1836, 2016
BstEII	GGTNACC	1 cut(s)	1547
BstENI	CCTNNNNNAGG	2 cut(s)	848, 2089
BstF5I	GGATG	6 cut(s)	310, 346, 840, 1222, 1529, 1678
BstFNI	CGCG	1 cut(s)	1499
BstH2I	RGCGCY	1 cut(s)	2244
BstHHI	GCGC	2 cut(s)	892, 2243
BstKTI	GATC	8 cut(s)	256, 382, 1286, 1447, 1689, 1850, 1975, 2189
BstMAI	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
BstMBI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BstNI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BstNSI	RCATGY	1 cut(s)	914
BstPI	GGTNACC	1 cut(s)	1547
BstSCI	CCNGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
BstSLI	GKGCMC	1 cut(s)	1966
BstUI	CGCG	1 cut(s)	1499
BstV1I	GCAGC	3 cut(s)	25, 1465, 1769
BstV2I	GAAGAC	2 cut(s)	741, 1390
BstX2I	RGATCY	3 cut(s)	1847, 1972, 2186
BstYI	RGATCY	3 cut(s)	1847, 1972, 2186
Bsu36I	CCTNAGG	1 cut(s)	1836
BsuRI	GGCC	3 cut(s)	348, 818, 1388
BtgZI	GCGATG	1 cut(s)	1080
BtrI	CACGTC	1 cut(s)	2060
BtsCI	GGATG	6 cut(s)	310, 346, 840, 1222, 1529, 1678
BtsI	GCAGTG	2 cut(s)	944, 1423
BtsIMutI	CAGTG	4 cut(s)	944, 1086, 1423, 1653
Cac8I	GCNNGC	6 cut(s)	43, 561, 912, 1566, 1635, 2098
CfoI	GCGC	2 cut(s)	892, 2243
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
CseI	GACGC	1 cut(s)	999
Csp6I	GTAC	3 cut(s)	1139, 1307, 1998
CviAII	CATG	8 cut(s)	316, 350, 911, 1327, 1654, 1767, 1772, 1814
CviQI	GTAC	3 cut(s)	1139, 1307, 1998
DdeI	CTNAG	8 cut(s)	71, 234, 494, 714, 896, 1409, 1836, 2016
DpnI	GATC	8 cut(s)	255, 381, 1285, 1446, 1688, 1849, 1974, 2188
DpnII	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
DraI	TTTAAA	1 cut(s)	2314
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	554
Eco32I	GATATC	2 cut(s)	1643, 1913
Eco47I	GGWCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
Eco47III	AGCGCT	1 cut(s)	2242
Eco57I	CTGAAG	1 cut(s)	1679
Eco81I	CCTNAGG	1 cut(s)	1836
Eco91I	GGTNACC	1 cut(s)	1547
EcoNI	CCTNNNNNAGG	2 cut(s)	848, 2089
EcoO109I	RGGNCCY	2 cut(s)	854, 1334
EcoO65I	GGTNACC	1 cut(s)	1547
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
EcoRV	GATATC	2 cut(s)	1643, 1913
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	2 cut(s)	454, 1680
ErhI	CCWWGG	1 cut(s)	554
Esp3I	CGTCTC	1 cut(s)	1017
FaeI	CATG	8 cut(s)	319, 353, 914, 1330, 1657, 1770, 1775, 1817
FalI	AAGNNNNNCTT	6 cut(s)	771, 803, 1684, 1716, 1834, 1866
FaqI	GGGAC	3 cut(s)	92, 1224, 2070
FatI	CATG	8 cut(s)	315, 349, 910, 1326, 1653, 1766, 1771, 1813
FauI	CCCGC	4 cut(s)	1206, 1504, 1573, 1626
Fnu4HI	GCNGC	3 cut(s)	39, 1479, 1783
FokI	GGATG	6 cut(s)	317, 353, 827, 1229, 1536, 1665
Fsp4HI	GCNGC	3 cut(s)	39, 1479, 1783
FspBI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
GlaI	GCGC	2 cut(s)	891, 2242
GluI	GCNGC	3 cut(s)	39, 1479, 1783
GsuI	CTGGAG	3 cut(s)	531, 843, 1725
HaeII	RGCGCY	1 cut(s)	2244
HaeIII	GGCC	3 cut(s)	348, 818, 1388
HapII	CCGG	2 cut(s)	61, 819
HgaI	GACGC	1 cut(s)	999
HhaI	GCGC	2 cut(s)	892, 2243
Hin1I	GRCGYC	1 cut(s)	1010
Hin1II	CATG	8 cut(s)	319, 353, 914, 1330, 1657, 1770, 1775, 1817
Hin6I	GCGC	2 cut(s)	890, 2241
HinP1I	GCGC	2 cut(s)	890, 2241
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	3 cut(s)	20, 491, 1693
HinfI	GANTC	5 cut(s)	482, 794, 1501, 1721, 2012
HpaII	CCGG	2 cut(s)	61, 819
HphI	GGTGA	6 cut(s)	605, 1364, 1559, 1867, 1915, 2281
Hpy166II	GTNNAC	4 cut(s)	334, 1139, 1964, 2011
Hpy188I	TCNGA	8 cut(s)	521, 715, 1283, 1542, 1691, 1748, 2006, 2017
Hpy8I	GTNNAC	4 cut(s)	334, 1139, 1964, 2011
HpyAV	CCTTC	7 cut(s)	590, 720, 1170, 1602, 1710, 1811, 2099
HpyCH4III	ACNGT	8 cut(s)	170, 325, 421, 928, 1229, 1573, 1961, 2041
HpyCH4IV	ACGT	3 cut(s)	1141, 1987, 2059
HpyF3I	CTNAG	8 cut(s)	71, 234, 494, 714, 896, 1409, 1836, 2016
HpySE526I	ACGT	3 cut(s)	1141, 1987, 2059
Hsp92I	GRCGYC	1 cut(s)	1010
Hsp92II	CATG	8 cut(s)	319, 353, 914, 1330, 1657, 1770, 1775, 1817
HspAI	GCGC	2 cut(s)	890, 2241
Kzo9I	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
LmnI	GCTCC	1 cut(s)	1162
Lsp1109I	GCAGC	3 cut(s)	25, 1465, 1769
LweI	GCATC	8 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201
MaeI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
MaeII	ACGT	3 cut(s)	1141, 1987, 2059
MaeIII	GTNAC	7 cut(s)	170, 283, 580, 616, 1223, 1547, 1648
MalI	GATC	8 cut(s)	255, 381, 1285, 1446, 1688, 1849, 1974, 2188
MboI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
MboII	GAAGA	9 cut(s)	76, 123, 233, 311, 746, 1390, 1672, 1742, 2138
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	3 cut(s)	1847, 1972, 2186
MhlI	GDGCHC	2 cut(s)	1159, 1966
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	3 cut(s)	1495, 1715, 2006
MmeI	TCCRAC	3 cut(s)	270, 1106, 2164
Mox20I	TGGCCA	1 cut(s)	348
Mph1103I	ATGCAT	2 cut(s)	454, 1680
MroXI	GAANNNNTTC	2 cut(s)	1362, 2130
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	8 cut(s)	690, 789, 1059, 1100, 1923, 2261, 2265, 2313
MslI	CAYNNNNRTG	1 cut(s)	1589
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	1633
MspI	CCGG	2 cut(s)	61, 819
MspR9I	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	1864
MvaI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
MvnI	CGCG	1 cut(s)	1499
NdeII	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
NlaIII	CATG	8 cut(s)	319, 353, 914, 1330, 1657, 1770, 1775, 1817
NlaIV	GGNNCC	3 cut(s)	423, 855, 1335
NmuCI	GTSAC	4 cut(s)	283, 1223, 1547, 1648
NsiI	ATGCAT	2 cut(s)	454, 1680
NspI	RCATGY	1 cut(s)	914
NspV	TTCGAA	1 cut(s)	219
PacI	TTAATTAA	1 cut(s)	2265
PaeI	GCATGC	1 cut(s)	914
PasI	CCCWGGG	1 cut(s)	1017
PctI	GAATGC	1 cut(s)	1864
PdmI	GAANNNNTTC	2 cut(s)	1362, 2130
PfeI	GAWTC	2 cut(s)	482, 794
PflMI	CCANNNNNTGG	1 cut(s)	1088
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	3 cut(s)	40, 1480, 1784
PleI	GAGTC	3 cut(s)	1495, 1715, 2006
PpsI	GAGTC	3 cut(s)	1495, 1715, 2006
Ppu21I	YACGTR	1 cut(s)	1142
PpuMI	RGGWCCY	2 cut(s)	854, 1334
PsiI	TTATAA	3 cut(s)	441, 1466, 1949
Psp1406I	AACGTT	1 cut(s)	1987
Psp5II	RGGWCCY	2 cut(s)	854, 1334
Psp6I	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
PspEI	GGTNACC	1 cut(s)	1547
PspGI	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
PspN4I	GGNNCC	3 cut(s)	423, 855, 1335
PspPI	GGNCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
PspPPI	RGGWCCY	2 cut(s)	854, 1334
PsrI	GAACNNNNNNTAC	2 cut(s)	1405, 1437
PsuI	RGATCY	3 cut(s)	1847, 1972, 2186
RsaI	GTAC	3 cut(s)	1140, 1308, 1999
RsaNI	GTAC	3 cut(s)	1139, 1307, 1998
RseI	CAYNNNNRTG	1 cut(s)	1589
SaqAI	TTAA	8 cut(s)	690, 789, 1059, 1100, 1923, 2261, 2265, 2313
SatI	GCNGC	3 cut(s)	39, 1479, 1783
Sau3AI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
Sau96I	GGNCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
ScaI	AGTACT	1 cut(s)	1999
SchI	GAGTC	3 cut(s)	1495, 1715, 2006
ScrFI	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
SduI	GDGCHC	2 cut(s)	1159, 1966
SfaNI	GCATC	8 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
SmiMI	CAYNNNNRTG	1 cut(s)	1589
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SphI	GCATGC	1 cut(s)	914
SsiI	CCGC	8 cut(s)	88, 571, 667, 1213, 1252, 1497, 1566, 1633
SspI	AATATT	2 cut(s)	548, 2079
SspMI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
StyD4I	CCNGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	8 cut(s)	170, 325, 421, 928, 1229, 1573, 1961, 2041
TaiI	ACGT	3 cut(s)	1144, 1990, 2062
TaqI	TCGA	6 cut(s)	219, 395, 1176, 1366, 1403, 1620
TatI	WGTACW	1 cut(s)	1997
TfiI	GAWTC	2 cut(s)	482, 794
Tru1I	TTAA	8 cut(s)	690, 789, 1059, 1100, 1923, 2261, 2265, 2313
Tru9I	TTAA	8 cut(s)	690, 789, 1059, 1100, 1923, 2261, 2265, 2313
TscAI	CASTG	4 cut(s)	951, 1093, 1423, 1653
TseFI	GTSAC	4 cut(s)	283, 1223, 1547, 1648
TseI	GCWGC	3 cut(s)	38, 1478, 1782
Tsp45I	GTSAC	4 cut(s)	283, 1223, 1547, 1648
TspRI	CASTG	4 cut(s)	951, 1093, 1423, 1653
Van91I	CCANNNNNTGG	1 cut(s)	1088
VneI	GTGCAC	1 cut(s)	1962
VpaK11BI	GGWCC	6 cut(s)	408, 758, 854, 1334, 1736, 1790
XagI	CCTNNNNNAGG	2 cut(s)	848, 2089
XapI	RAATTY	6 cut(s)	433, 750, 989, 1439, 1595, 1874
XceI	RCATGY	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1300
XmnI	GAANNNNTTC	2 cut(s)	1362, 2130
XspI	CTAG	6 cut(s)	950, 1038, 1343, 1929, 2157, 2231
ZrmI	AGTACT	1 cut(s)	1999
Zsp2I	ATGCAT	2 cut(s)	454, 1680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.