Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008792

Physical Location & Seq

Genomic Coordinates Reverse (-)

628820 .. 630646

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1008400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGTCCATCGCCAGTTCTGCTGCAACTTCAGCAGACTGGTCTTCTGCTCGCGTAATTTCATCCAAAAATCCCCGCAAATTCAACTTCATCGCATCATTCAAAACCAATTTATTCTCTTCCAATCTTCCCACCAGCAGCTACAGTAATATCAGAGTTTTCAATGTAAACTCCACCAATTTTCCCGTCGTTGAATTGGACATAAAATTACAAAAATCCCCAGAAGAATGTCCAGCTCCGTCGCCGGATGCCGATGACTTGAACAACTTACTCTGTCGGTTGTTTCAAAACCCTCAAACCGAAGATTACGCATATGAAGAGTACGAGAAAGCGCGAAAGAAGGCCGAATTCAGACCAAACAAATCAACATTGGAGCAGCTGATAAGGCACTTGATCCGTTCCAAGAAATGGGGTTTGTTTACTTTGGTTTGTGAGGATTTTAAGAATTATAATGTAGTGCCTGATGGTTATACTTGCTCTAGATTGGTCACTAGCTGCATTAGAGCTAGGAAGTTCAAAATTGTTAGGACTTTGCTTGATGTGTTTAGTGAGCATGGAAATGATGTCGCTGTCCCGGCTTTTGATTCAGCGATGCGAGGATATAATGAGCTTCATATGTTTAAGAGCACGATTTCCGTGTTTGAACGGATGGAATCCGATGGAATTGCTGCGAATTCTGGATGTTATTGCCTGATCATGGAAGCTTATTTGAAAAAGGGTGATTGTAGAAAAGTTGTTGAATTGTATGAAGAGCTGAAAAGTAGGGAATTAGATTTGGCACCATTTTCAACTCAAATATACGGAATTTTATGCGAGTCGCTGTGCAAATTGGGAAGGCCTTTTGAAGCTCTTGAAACTTTTCGAAGTGTGACGAAGAGTGGAGTTCCTTTAGACTCTTCGAAGATTTACTCTGTGCTGATTTGTTCCTTCGCGAGCATTCGAGAAGTGGAGGTGGCTGAAGAGCTTTTTGAAGAAGGAGAGAGCAAGAAAATGTTGAAGGATCCGAATCCGTTTTTAAGAATGATATCAATGTATGTGGAAGAAGGGTTGACGGAGAAGACTCTCGGGGTAGTTAAGGCGATGAAGGGTGCGAATATCAGGGTTTCGGACAATATATGTTGTGCGGTTGTCAGTGGCTTCTCTAGGAAAAACCGGCTCCTGACTGCAGTTAAAGTTTTCGAAGAGTTGGTGTCGATGGGCTGCCAGCCAGGGCAAGTGACATATGCGTCAATCATCAATGTCTATTGCCGCCTAGGGCTTCACTCGAAAGCAGAAAAGGTTTTTGAGGAGATGGAGGAAAAGGGGTTTGGTAAATGTGTTGTGGCTTATTCTAGCATGGTTGTCATGTATGGGAAAACGGGGAGGCCAAGAGACGCAATGAGGCTCGTGGCGAAAATGAAGGAAAGAGGGTGTAAGCCAAACGTATGGATATACAATTCTTTGATGGATATGCATGGAAGGGACAAGAATTTGAGGCAAGTTTCGAAGATTTGGACGGAAATGAAGCGAAGGAAGATAGCGCCGGATAAGGTAAGCTACACGACGATTATAGGTGCTTACAACAAGGCAGGGGAGTACGAAATGTGTATGAAATATTACCATGAGTTTAGGGTTCAAGGGGGTGTTTTGGACAAGGCTTTGGCTGGAATGATGGTCGCAATTTTTTCCAAGACGGGCCGGATTGATGAACTGGTGAAGCTTTTGAGAGATATGAAAGCGGAAGGGGCAGAGTTGGATGGGAGGTTATATCGGTCCGCCTTGAAAGCCTTGACAGATTCCGGCCTGGAAATGCAGGTCAAATGGCTGCAAGGTAGCTTTAAGGTTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

609

Amino Acids

68.79

Weight (kDa)

8.92

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	374 - 416	2.5e-07	PPR repeat family
PPR_1	PF12854	398 - 431	2.5e-09	PPR repeat
PPR_2	PF13041	402 - 435	7.3e-07	PPR repeat family
PPR	PF01535	405 - 435	8.2e-09	PPR repeat
PPR_3	PF13812	425 - 485	3.3e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	438 - 474	4.9e-08	PPR repeat family
PPR	PF01535	440 - 470	1e-05	PPR repeat
PPR_2	PF13041	472 - 519	2.3e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13770
fragaria_vesca	FvH4_4g36140
malus_domestica	MD13G1010900.v1.1 MD16G1008400.v1.1
prunus_persica	Prupe.1G342100_v2.0.a1
pyrus_communis	pycom16g00820
rosa_chinensis	RchiOBHm_Chr4g0445881
rosa_laevigata	RLG00000005705
rosa_multiflora	Rmu_co8340621.1_g000001 Rmu_sc0000961.1_g000004 Rmu_sc0000961.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386320
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG427200 Rh4BG437000 Rh4BG437400 Rh4BG437500 Rh4CG453700 Rh4CG453800 Rh4CG454200 Rh4DG435500
rosa_wichuraiana	Rw4G036550 Rw4G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AasI	GACNNNNNNGTC	1 cut(s)	1222
Acc36I	ACCTGC	1 cut(s)	1780
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	405
AccII	CGCG	3 cut(s)	51, 331, 929
AciI	CCGC	5 cut(s)	73, 1121, 1246, 1715, 1752
AclWI	GGATC	3 cut(s)	385, 992, 1005
AcsI	RAATTY	5 cut(s)	77, 344, 670, 801, 1465
AcuI	CTGAAG	2 cut(s)	12, 975
AfaI	GTAC	2 cut(s)	320, 1574
AfiI	CCNNNNNNNGG	2 cut(s)	405, 694
AjnI	CCWGG	2 cut(s)	1204, 1779
AjuI	GAANNNNNNNTTGG	2 cut(s)	1287, 1319
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	1 cut(s)	1362
AlwI	GGATC	3 cut(s)	385, 992, 1005
Ama87I	CYCGRG	1 cut(s)	1061
AoxI	GGCC	5 cut(s)	339, 833, 1361, 1672, 1777
ApeKI	GCWGC	7 cut(s)	20, 135, 373, 492, 665, 1197, 1801
ApoI	RAATTY	5 cut(s)	77, 344, 670, 801, 1465
Asp700I	GAANNNNTTC	1 cut(s)	855
AspA2I	CCTAGG	1 cut(s)	1249
AspLEI	GCGC	2 cut(s)	331, 1519
AspS9I	GGNCC	2 cut(s)	1672, 1749
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	728, 1702
AsuII	TTCGAA	4 cut(s)	859, 896, 1176, 1481
AvaI	CYCGRG	1 cut(s)	1061
AvaII	GGWCC	1 cut(s)	1749
AvrII	CCTAGG	1 cut(s)	1249
BamHI	GGATCC	1 cut(s)	997
BanI	GGYRCC	1 cut(s)	775
BauI	CACGAG	1 cut(s)	1382
BbsI	GAAGAC	2 cut(s)	33, 1061
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	7 cut(s)	7, 147, 385, 479, 652, 1184, 1788
BccI	CCATC	9 cut(s)	14, 455, 640, 650, 1186, 1282, 1435, 1642, 1727
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	2 cut(s)	1206, 1781
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	1362
BfaI	CTAG	6 cut(s)	477, 489, 504, 1140, 1250, 1329
BfmI	CTRYAG	2 cut(s)	139, 1161
BfoI	RGCGCY	1 cut(s)	1520
BfuAI	ACCTGC	1 cut(s)	1780
BisI	GCNGC	8 cut(s)	21, 136, 374, 493, 666, 1198, 1246, 1802
BlnI	CCTAGG	1 cut(s)	1249
BlsI	GCNGC	8 cut(s)	22, 137, 375, 494, 667, 1199, 1247, 1803
Bme1390I	CCNGG	3 cut(s)	572, 1206, 1781
Bme18I	GGWCC	1 cut(s)	1749
BmeT110I	CYCGRG	1 cut(s)	1061
BmgT120I	GGNCC	2 cut(s)	1672, 1749
BmiI	GGNNCC	3 cut(s)	777, 999, 1154
BmrFI	CCNGG	3 cut(s)	572, 1206, 1781
BmsI	GCATC	3 cut(s)	101, 235, 579
BpiI	GAAGAC	2 cut(s)	33, 1061
Bpu14I	TTCGAA	4 cut(s)	859, 896, 1176, 1481
BpuMI	CCSGG	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	1824
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaJI	CCNNGG	2 cut(s)	1205, 1249
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 694
Bse118I	RCCGGY	1 cut(s)	1149
Bse1I	ACTGG	3 cut(s)	12, 41, 1692
Bse3DI	GCAATG	1 cut(s)	1380
Bse8I	GATNNNNATC	1 cut(s)	1002
BseBI	CCWGG	2 cut(s)	1206, 1781
BseDI	CCNNGG	2 cut(s)	1205, 1249
BseGI	GGATG	5 cut(s)	59, 250, 651, 683, 1738
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	2 cut(s)	405, 694
BseMI	GCAATG	1 cut(s)	1380
BseNI	ACTGG	3 cut(s)	12, 41, 1692
BseRI	GAGGAG	1 cut(s)	1298
BseXI	GCAGC	7 cut(s)	7, 147, 385, 479, 652, 1184, 1788
Bsh1236I	CGCG	3 cut(s)	51, 331, 929
BshFI	GGCC	5 cut(s)	341, 835, 1363, 1674, 1779
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	626
BsiHKCI	CYCGRG	1 cut(s)	1061
BsiSI	CCGG	6 cut(s)	242, 572, 1150, 1520, 1675, 1776
BslFI	GGGAC	2 cut(s)	554, 1472
BslI	CCNNNNNNNGG	2 cut(s)	405, 694
BsmAI	GTCTC	1 cut(s)	1362
BsmBI	CGTCTC	1 cut(s)	1362
BsmFI	GGGAC	2 cut(s)	554, 1472
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	5 cut(s)	341, 835, 1363, 1674, 1779
BsoBI	CYCGRG	1 cut(s)	1061
Bsp119I	TTCGAA	4 cut(s)	859, 896, 1176, 1481
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	3 cut(s)	390, 690, 997
Bsp68I	TCGCGA	1 cut(s)	929
BspACI	CCGC	5 cut(s)	73, 1121, 1246, 1715, 1752
BspANI	GGCC	5 cut(s)	341, 835, 1363, 1674, 1779
BspFNI	CGCG	3 cut(s)	51, 331, 929
BspLI	GGNNCC	3 cut(s)	777, 999, 1154
BspMAI	CTGCAG	1 cut(s)	1165
BspMI	ACCTGC	1 cut(s)	1780
BspPI	GGATC	3 cut(s)	385, 992, 1005
BspQI	GCTCTTC	2 cut(s)	741, 951
BspT104I	TTCGAA	4 cut(s)	859, 896, 1176, 1481
BspT107I	GGYRCC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	1380
BsrFI	RCCGGY	1 cut(s)	1149
BsrI	ACTGG	3 cut(s)	12, 41, 1692
BssAI	RCCGGY	1 cut(s)	1149
BssECI	CCNNGG	2 cut(s)	1205, 1249
BssMI	GATC	3 cut(s)	390, 690, 997
BssSI	CACGAG	1 cut(s)	1382
BssT1I	CCWWGG	1 cut(s)	1249
Bst2BI	CACGAG	1 cut(s)	1382
Bst2UI	CCWGG	2 cut(s)	1206, 1781
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	7 cut(s)	121, 309, 741, 866, 898, 951, 1173
BstBAI	YACGTR	1 cut(s)	1824
BstBI	TTCGAA	4 cut(s)	859, 896, 1176, 1481
BstC8I	GCNNGC	3 cut(s)	49, 931, 1202
BstF5I	GGATG	5 cut(s)	59, 250, 651, 683, 1738
BstFNI	CGCG	3 cut(s)	51, 331, 929
BstH2I	RGCGCY	1 cut(s)	1520
BstHHI	GCGC	2 cut(s)	331, 1519
BstKTI	GATC	3 cut(s)	393, 693, 1000
BstMAI	GTCTC	1 cut(s)	1362
BstMBI	GATC	3 cut(s)	390, 690, 997
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 29, 382, 572, 1721, 1760
BstNI	CCWGG	2 cut(s)	1206, 1781
BstSCI	CCNGG	3 cut(s)	570, 1204, 1779
BstSFI	CTRYAG	2 cut(s)	139, 1161
BstSNI	TACGTA	1 cut(s)	1824
BstUI	CGCG	3 cut(s)	51, 331, 929
BstV1I	GCAGC	7 cut(s)	7, 147, 385, 479, 652, 1184, 1788
BstV2I	GAAGAC	2 cut(s)	33, 1061
BstX2I	RGATCY	1 cut(s)	997
BstXI	CCANNNNNNTGG	1 cut(s)	1422
BstYI	RGATCY	1 cut(s)	997
BsuRI	GGCC	5 cut(s)	341, 835, 1363, 1674, 1779
BtgZI	GCGATG	3 cut(s)	73, 602, 1091
BtsCI	GGATG	5 cut(s)	59, 250, 651, 683, 1738
BtsIMutI	CAGTG	1 cut(s)	1135
BtuMI	TCGCGA	1 cut(s)	929
BveI	ACCTGC	1 cut(s)	1780
Cac8I	GCNNGC	3 cut(s)	49, 931, 1202
CfoI	GCGC	2 cut(s)	331, 1519
Cfr10I	RCCGGY	1 cut(s)	1149
Cfr13I	GGNCC	2 cut(s)	1672, 1749
CpoI	CGGWCCG	1 cut(s)	1749
CseI	GACGC	2 cut(s)	1212, 1379
Csp6I	GTAC	2 cut(s)	319, 1573
CspCI	CAANNNNNGTGG	2 cut(s)	1014, 1049
CspI	CGGWCCG	1 cut(s)	1749
CviAII	CATG	6 cut(s)	551, 694, 1333, 1342, 1451, 1598
CviQI	GTAC	2 cut(s)	319, 1573
DpnI	GATC	3 cut(s)	392, 692, 999
DpnII	GATC	3 cut(s)	390, 690, 997
DrdI	GACNNNNNNGTC	1 cut(s)	1222
DseDI	GACNNNNNNGTC	1 cut(s)	1222
Eam1104I	CTCTTC	7 cut(s)	121, 309, 741, 866, 898, 951, 1173
EarI	CTCTTC	7 cut(s)	121, 309, 741, 866, 898, 951, 1173
EciI	GGCGGA	1 cut(s)	1741
Eco105I	TACGTA	1 cut(s)	1824
Eco130I	CCWWGG	1 cut(s)	1249
Eco147I	AGGCCT	1 cut(s)	835
Eco32I	GATATC	1 cut(s)	1023
Eco47I	GGWCC	1 cut(s)	1749
Eco57I	CTGAAG	2 cut(s)	12, 975
Eco88I	CYCGRG	1 cut(s)	1061
EcoRI	GAATTC	2 cut(s)	344, 670
EcoRII	CCWGG	2 cut(s)	1204, 1779
EcoRV	GATATC	1 cut(s)	1023
EcoT14I	CCWWGG	1 cut(s)	1249
EcoT22I	ATGCAT	1 cut(s)	1452
ErhI	CCWWGG	1 cut(s)	1249
Esp3I	CGTCTC	1 cut(s)	1362
FaeI	CATG	6 cut(s)	554, 697, 1336, 1345, 1454, 1601
FaqI	GGGAC	2 cut(s)	554, 1472
FatI	CATG	6 cut(s)	550, 693, 1332, 1341, 1450, 1597
FauI	CCCGC	1 cut(s)	80
FauNDI	CATATG	3 cut(s)	310, 612, 1219
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	8 cut(s)	21, 136, 374, 493, 666, 1198, 1246, 1802
FokI	GGATG	5 cut(s)	46, 257, 658, 690, 1745
Fsp4HI	GCNGC	8 cut(s)	21, 136, 374, 493, 666, 1198, 1246, 1802
FspBI	CTAG	6 cut(s)	477, 489, 504, 1140, 1250, 1329
GlaI	GCGC	2 cut(s)	330, 1518
GluI	GCNGC	8 cut(s)	21, 136, 374, 493, 666, 1198, 1246, 1802
HaeII	RGCGCY	1 cut(s)	1520
HaeIII	GGCC	5 cut(s)	341, 835, 1363, 1674, 1779
HapII	CCGG	6 cut(s)	242, 572, 1150, 1520, 1675, 1776
HgaI	GACGC	2 cut(s)	1212, 1379
HhaI	GCGC	2 cut(s)	331, 1519
Hin1II	CATG	6 cut(s)	554, 697, 1336, 1345, 1454, 1601
Hin6I	GCGC	2 cut(s)	329, 1517
HinP1I	GCGC	2 cut(s)	329, 1517
HincII	GTYRAC	1 cut(s)	1047
HindII	GTYRAC	1 cut(s)	1047
HindIII	AAGCTT	2 cut(s)	699, 1694
HinfI	GANTC	7 cut(s)	581, 650, 812, 890, 1003, 1057, 1772
HpaII	CCGG	6 cut(s)	242, 572, 1150, 1520, 1675, 1776
HphI	GGTGA	2 cut(s)	728, 1702
Hpy166II	GTNNAC	3 cut(s)	166, 417, 1047
Hpy188I	TCNGA	5 cut(s)	152, 350, 655, 1002, 1105
Hpy188III	TCNNGA	6 cut(s)	477, 675, 848, 928, 938, 1156
Hpy8I	GTNNAC	3 cut(s)	166, 417, 1047
Hpy99I	CGWCG	3 cut(s)	188, 241, 1543
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	1419, 1823
HpyCH4V	TGCA	7 cut(s)	23, 495, 822, 1163, 1450, 1789, 1804
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 29, 382, 572, 1721, 1760
HpySE526I	ACGT	2 cut(s)	1419, 1823
Hsp92II	CATG	6 cut(s)	554, 697, 1336, 1345, 1454, 1601
HspAI	GCGC	2 cut(s)	329, 1517
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	3 cut(s)	390, 690, 997
LguI	GCTCTTC	2 cut(s)	741, 951
LmnI	GCTCC	3 cut(s)	238, 370, 1158
Lsp1109I	GCAGC	7 cut(s)	7, 147, 385, 479, 652, 1184, 1788
LweI	GCATC	3 cut(s)	101, 235, 579
MaeI	CTAG	6 cut(s)	477, 489, 504, 1140, 1250, 1329
MaeII	ACGT	2 cut(s)	1419, 1823
MaeIII	GTNAC	4 cut(s)	484, 865, 1213, 1819
MalI	GATC	3 cut(s)	392, 692, 999
MboI	GATC	3 cut(s)	390, 690, 997
MflI	RGATCY	1 cut(s)	997
MhlI	GDGCHC	1 cut(s)	626
MlyI	GAGTC	3 cut(s)	821, 884, 1051
MmeI	TCCRAC	1 cut(s)	1710
Mph1103I	ATGCAT	1 cut(s)	1452
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	6 cut(s)	438, 618, 1013, 1071, 1167, 1815
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	6 cut(s)	242, 572, 1150, 1520, 1675, 1776
MspR9I	CCNGG	3 cut(s)	572, 1206, 1781
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	2 cut(s)	1206, 1781
MvnI	CGCG	3 cut(s)	51, 331, 929
MwoI	GCNNNNNNNGC	6 cut(s)	17, 29, 382, 572, 1721, 1760
NciI	CCSGG	1 cut(s)	572
NdeI	CATATG	3 cut(s)	310, 612, 1219
NdeII	GATC	3 cut(s)	390, 690, 997
NlaIII	CATG	6 cut(s)	554, 697, 1336, 1345, 1454, 1601
NlaIV	GGNNCC	3 cut(s)	777, 999, 1154
NmuCI	GTSAC	3 cut(s)	484, 865, 1213
NruI	TCGCGA	1 cut(s)	929
NsiI	ATGCAT	1 cut(s)	1452
NspV	TTCGAA	4 cut(s)	859, 896, 1176, 1481
PceI	AGGCCT	1 cut(s)	835
PciSI	GCTCTTC	2 cut(s)	741, 951
PctI	GAATGC	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	4 cut(s)	581, 650, 1003, 1772
PflMI	CCANNNNNTGG	1 cut(s)	405
PkrI	GCNGC	8 cut(s)	22, 137, 375, 494, 667, 1199, 1247, 1803
PleI	GAGTC	3 cut(s)	820, 884, 1051
PpsI	GAGTC	3 cut(s)	820, 884, 1051
Ppu21I	YACGTR	1 cut(s)	1824
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	1204, 1779
PspGI	CCWGG	2 cut(s)	1204, 1779
PspN4I	GGNNCC	3 cut(s)	777, 999, 1154
PspPI	GGNCC	2 cut(s)	1672, 1749
PstI	CTGCAG	1 cut(s)	1165
PsuI	RGATCY	1 cut(s)	997
PvuII	CAGCTG	1 cut(s)	376
RruI	TCGCGA	1 cut(s)	929
RsaI	GTAC	2 cut(s)	320, 1574
RsaNI	GTAC	2 cut(s)	319, 1573
RseI	CAYNNNNRTG	1 cut(s)	555
Rsr2I	CGGWCCG	1 cut(s)	1749
RsrII	CGGWCCG	1 cut(s)	1749
SapI	GCTCTTC	2 cut(s)	741, 951
SaqAI	TTAA	6 cut(s)	438, 618, 1013, 1071, 1167, 1815
SatI	GCNGC	8 cut(s)	21, 136, 374, 493, 666, 1198, 1246, 1802
Sau3AI	GATC	3 cut(s)	390, 690, 997
Sau96I	GGNCC	2 cut(s)	1672, 1749
SchI	GAGTC	3 cut(s)	821, 884, 1051
ScrFI	CCNGG	3 cut(s)	572, 1206, 1781
SduI	GDGCHC	1 cut(s)	626
SfaNI	GCATC	3 cut(s)	101, 235, 579
SfcI	CTRYAG	2 cut(s)	139, 1161
SfuI	TTCGAA	4 cut(s)	859, 896, 1176, 1481
SinI	GGWCC	1 cut(s)	1749
SmiMI	CAYNNNNRTG	1 cut(s)	555
SnaBI	TACGTA	1 cut(s)	1824
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	5 cut(s)	73, 1121, 1246, 1715, 1752
SspI	AATATT	1 cut(s)	1592
SspMI	CTAG	6 cut(s)	477, 489, 504, 1140, 1250, 1329
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	3 cut(s)	570, 1204, 1779
StyI	CCWWGG	1 cut(s)	1249
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	1422, 1826
TaqI	TCGA	7 cut(s)	859, 896, 937, 1176, 1190, 1262, 1481
TaqII	GACCGA	1 cut(s)	1737
TauI	GCSGC	1 cut(s)	1248
TfiI	GAWTC	4 cut(s)	581, 650, 1003, 1772
Tru1I	TTAA	6 cut(s)	438, 618, 1013, 1071, 1167, 1815
Tru9I	TTAA	6 cut(s)	438, 618, 1013, 1071, 1167, 1815
TscAI	CASTG	1 cut(s)	1135
TseFI	GTSAC	3 cut(s)	484, 865, 1213
TseI	GCWGC	7 cut(s)	20, 135, 373, 492, 665, 1197, 1801
Tsp45I	GTSAC	3 cut(s)	484, 865, 1213
TspGWI	ACGGA	8 cut(s)	225, 383, 622, 658, 813, 996, 1064, 1508
TspRI	CASTG	1 cut(s)	1135
Van91I	CCANNNNNTGG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	1749
XapI	RAATTY	5 cut(s)	77, 344, 670, 801, 1465
XbaI	TCTAGA	1 cut(s)	476
XmaJI	CCTAGG	1 cut(s)	1249
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	6 cut(s)	477, 489, 504, 1140, 1250, 1329
Zsp2I	ATGCAT	1 cut(s)	1452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.