Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008792

Physical Location & Seq

Genomic Coordinates Reverse (-)

57810099 .. 57810473

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG437000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGACATGAACAGTATGAGAAAGCCAAGAAGATATCAGAATTCAGGCCAAACAAATCAACATTGGAGCATGTGACAAGGTATTTGGTACTATCAAAGAAGTGGGGTTCAATTCTTTCAGTTTCTAATGATTTCAAGACATATGATTTGCTGCCTGATAGCTATACATGTTCTAGACTGGTCACTAGTTGCATTAGAGCTAGGAAGTTCAAGATTGTTAGCACTTTGCTTGAAGTGTTTAAGTCCAACGACGATGTTGCTCTGCTGGCCTTTGATTCTGCTACGAGAGGCTACAATGAGCTTCACATGTATAAAAGTTCCCTGTCTGTGTTTGAAAAAAATGATATTTTCTCGGGATTCTGGGTGTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

124

Amino Acids

14.34

Weight (kDa)

9.08

Isoelectric Point (pI)

18.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13770
fragaria_vesca	FvH4_4g36140
malus_domestica	MD13G1010900.v1.1 MD16G1008400.v1.1
prunus_persica	Prupe.1G342100_v2.0.a1
pyrus_communis	pycom16g00820
rosa_chinensis	RchiOBHm_Chr4g0445881
rosa_laevigata	RLG00000005705
rosa_multiflora	Rmu_co8340621.1_g000001 Rmu_sc0000961.1_g000004 Rmu_sc0000961.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386320
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG427200 Rh4BG437000 Rh4BG437400 Rh4BG437500 Rh4CG453700 Rh4CG453800 Rh4CG454200 Rh4DG435500
rosa_wichuraiana	Rw4G036550 Rw4G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	1 cut(s)	90
AflIII	ACRYGT	2 cut(s)	167, 306
AgsI	TTSAA	5 cut(s)	111, 136, 211, 233, 335
AhlI	ACTAGT	1 cut(s)	185
AluBI	AGCT	3 cut(s)	162, 200, 301
AluI	AGCT	3 cut(s)	162, 200, 301
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	2 cut(s)	47, 267
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	41
ArsI	GACNNNNNNTTYG	4 cut(s)	67, 99, 130, 162
AvaI	CYCGRG	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	3 cut(s)	174, 186, 201
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	138
BshFI	GGCC	2 cut(s)	49, 269
BsiHKCI	CYCGRG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	49, 269
BsoBI	CYCGRG	1 cut(s)	352
BspANI	GGCC	2 cut(s)	49, 269
BsrI	ACTGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	3 cut(s)	74, 171, 310
BstV1I	GCAGC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	49, 269
Cac8I	GCNNGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	4 cut(s)	8, 71, 168, 307
CviJI	RGCY	7 cut(s)	26, 49, 162, 200, 269, 291, 301
CviKI_1	RGCY	7 cut(s)	26, 49, 162, 200, 269, 291, 301
CviQI	GTAC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	36
FaeI	CATG	4 cut(s)	11, 74, 171, 310
FaiI	YATR	9 cut(s)	9, 18, 72, 142, 144, 165, 169, 308, 312
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	7, 70, 167, 306
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	3 cut(s)	174, 186, 201
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	49, 269
Hin1II	CATG	4 cut(s)	11, 74, 171, 310
HinfI	GANTC	2 cut(s)	275, 357
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	136, 174, 211, 354
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	11, 74, 171, 310
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	31, 164, 168, 251, 335, 346
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	3 cut(s)	174, 186, 201
MaeIII	GTNAC	2 cut(s)	73, 181
MboII	GAAGA	1 cut(s)	43
MluCI	AATT	2 cut(s)	41, 111
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	142
NlaIII	CATG	4 cut(s)	11, 74, 171, 310
NmuCI	GTSAC	2 cut(s)	73, 181
NspI	RCATGY	3 cut(s)	74, 171, 310
PciI	ACATGT	2 cut(s)	167, 306
PfeI	GAWTC	2 cut(s)	275, 357
PkrI	GCNGC	1 cut(s)	153
PscI	ACATGT	2 cut(s)	167, 306
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	152
SetI	ASST	4 cut(s)	83, 164, 202, 303
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	2 cut(s)	41, 111
SspMI	CTAG	3 cut(s)	174, 186, 201
TaaI	ACNGT	1 cut(s)	15
TasI	AATT	2 cut(s)	41, 111
TfiI	GAWTC	2 cut(s)	275, 357
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	2 cut(s)	73, 181
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	73, 181
TspDTI	ATGAA	1 cut(s)	24
XapI	RAATTY	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	3 cut(s)	74, 171, 310
XspI	CTAG	3 cut(s)	174, 186, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.