Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008792

Physical Location & Seq

Genomic Coordinates Reverse (-)

57818033 .. 57818780

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG437500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCATCTCCAGTTCTTCTCCAAGTTCTGGAGACTGGTCTTTGGCTTCTTTGATATCTTGCAGAAAATCCCACAGAACACAGAAACCCCATTCCTTCTTCTCCATTCCCACCTGGAATGTTCGAGCTTTCAACATCATCAACTCCTCTGGCTGCCCTTCTCCAATACTTGAAGATCAAGCATCGACCAACTTGCCAGTCATTGAAGTGGACCTGAAATTTCAAGAACTTAAAATCCCGGATACCGAAAACTTAAATGAATTCCTATGTGGGCTGTTTCAAGACCCTGAGACTGAAGCAATGGGACATGAACAGTATGAGAAAGCAAAGAAGATATCAGAATTCAGACCAAACAAATCAACATTGGAGCATGTGACAAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

128

Amino Acids

14.41

Weight (kDa)

5.78

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13770
fragaria_vesca	FvH4_4g36140
malus_domestica	MD13G1010900.v1.1 MD16G1008400.v1.1
prunus_persica	Prupe.1G342100_v2.0.a1
pyrus_communis	pycom16g00820
rosa_chinensis	RchiOBHm_Chr4g0445881
rosa_laevigata	RLG00000005705
rosa_multiflora	Rmu_co8340621.1_g000001 Rmu_sc0000961.1_g000004 Rmu_sc0000961.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386320
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG427200 Rh4BG437000 Rh4BG437400 Rh4BG437500 Rh4CG453700 Rh4CG453800 Rh4CG454200 Rh4DG435500
rosa_wichuraiana	Rw4G036550 Rw4G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	218, 260, 341
AcuI	CTGAAG	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	5 cut(s)	133, 173, 206, 224, 281
AjnI	CCWGG	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	27, 284
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	3 cut(s)	218, 260, 341
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	27, 284
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	115, 239
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	115, 239
BmsI	GCATC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	3 cut(s)	12, 41, 197
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	12, 41, 197
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	27, 284
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	12, 41, 197
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	27, 284
BstMBI	GATC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	113, 237
BstV1I	GCAGC	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	2 cut(s)	308, 371
CviJI	RGCY	5 cut(s)	5, 47, 128, 153, 274
CviKI_1	RGCY	5 cut(s)	5, 47, 128, 153, 274
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	3
Eco32I	GATATC	2 cut(s)	57, 336
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	315
EcoRI	GAATTC	2 cut(s)	260, 341
EcoRII	CCWGG	1 cut(s)	113
EcoRV	GATATC	2 cut(s)	57, 336
FaeI	CATG	2 cut(s)	311, 374
FaiI	YATR	4 cut(s)	268, 309, 318, 372
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	307, 370
Fnu4HI	GCNGC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	2 cut(s)	311, 374
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	340, 347
Hpy188III	TCNNGA	3 cut(s)	30, 224, 281
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	106, 168
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	311, 374
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	4 cut(s)	9, 91, 185, 343
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	218, 260, 341
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	157
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	231, 254
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	115, 239
MvaI	CCWGG	1 cut(s)	115
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	311, 374
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	231, 254
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	115, 239
SetI	ASST	3 cut(s)	116, 130, 216
SfaNI	GCATC	1 cut(s)	191
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	218, 260, 341
StyD4I	CCNGG	2 cut(s)	113, 237
TaaI	ACNGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	124, 185
TasI	AATT	3 cut(s)	218, 260, 341
Tru1I	TTAA	2 cut(s)	231, 254
Tru9I	TTAA	2 cut(s)	231, 254
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	2 cut(s)	273, 324
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	3 cut(s)	218, 260, 341
XceI	RCATGY	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.