Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008792

Physical Location & Seq

Genomic Coordinates Reverse (-)

66237156 .. 66239338

Gene Structure 2183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGCCATCTCCAGTTCTTCTCCAAGTTCTGGAGACTGGTCTTTGGCTTCTTTGATATCTTGCAGAAAATCCCACAAAACACAGAAATCCCATTCCTTCTTCTCCATTCCCACCTGGAATGTTCGAGCTTTCAACATCATCAACTCCTCTGGCTGCCCTTCTCCAATACTTGAAGATCAAGCATCGACCAACTTGCCAGTCATTGAAGTGGACCTGAAATTTCAAGAACTTAAAATCCCGGATGCCGAAAACTTAAATGAATTCCTATGTGGGCTGTTTCAAGACCCTGAGACTGAAGCAATGGGACATGAACAGTATGAGAAAGCCAAGAAGATATCAGAATTCAGACCAAACAAGTCAACATTGGAGCATGTGACAAGGTATTTGGAACTGAAAAGTAGGCAATTAGATCTGACACCATTGTCAACTCAGATTCTATGCGAGTCGTTAACCAAATTGGGGAAGCCTCTAGAAGCTCTTGAGATTTTTCGAAGTATGTCAAAGGAAGGCATTTCTTTAGACTCTTCAAAGATATATTCTGTTTTGATCAGTTCATTTGCAAGCATTCGAGAAGTGAAGGTAGCTGAAGAGCTGTTTGAAGAAGCAGAAACCAAGAAAATGTTGAGGAATCCGACTGTATTTTTGAGACTGATCACAATGTATGTTGAAGAAGGGTCGGTGGATAAGACTCTTGAAATAGTCAAGGCAATGAAGGGTGCAAATATCAGAGTTTCCGATAACATATGCTGCGCAGTTGTGAGTGGCTTCTCCAGGAAAAGCAGGTTTCTCACAGCAGTTAAAGTGTTTGAAGATTTGATCTCAATGGGATGTGAACCGGGACAGGTGACATATGCTTCGATTATCAATGTGTATTGTCGTCTTGGGCTTCATTCTAAGGCTGAGATGGTGTTTAGAGAGATGGAAGAAAAAGGGTTTGATAAATGTGTTGTGGCGTATTCAAGCATGGTTGTAATGTATGGGAAGACAGGAAGGCCAAGAGAGGCAATGAGGCTTGTGGCCAAGATGAAAGAAAGAGGGTGTAAGCCGAATGTGTGGATTTACAATTCTTTGATGGATATGCATGGAAGGGATAATAATATGAGGCAAGTTGCAAAGCTATGGAGCGAAATGAAGCGAAGGAAGGTAGCACCAGATAAGGTGAGCTACACAACTGTTATAGGTGCTTATAACAAGGCAGGGGACTTTGATATGTGCTTGAGATTTTACAATGAGTATAGGACTCATGGCGGTGTCTTGGACAAGGCTATGGCTGGAATGATGGTTGGTGTTTTCTCCAAGAGTGGTCGTGTTGACGAGTTGGTGAAGCTTCTGCGAGATATGAAAGCAGAAGGAACAGGGTTAGATGTGAGGCTTTATCGATCCGCCTTGAATGCTTTGGCAGATTCTGGTCTGGAAATGCAGGTGAAATGGTTGCAAAGTAGCTTTGAGGTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

485

Amino Acids

54.66

Weight (kDa)

8.68

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	251 - 293	2.5e-06	PPR repeat family
PPR_1	PF12854	275 - 308	1.1e-08	PPR repeat
PPR_2	PF13041	279 - 312	2.5e-06	PPR repeat family
PPR	PF01535	282 - 312	2.5e-08	PPR repeat
PPR_3	PF13812	303 - 362	2.9e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	315 - 351	2.1e-08	PPR repeat family
PPR	PF01535	317 - 347	2e-06	PPR repeat
PPR_long	PF17177	334 - 446	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	349 - 395	1.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13770
fragaria_vesca	FvH4_4g36140
malus_domestica	MD13G1010900.v1.1 MD16G1008400.v1.1
prunus_persica	Prupe.1G342100_v2.0.a1
pyrus_communis	pycom16g00820
rosa_chinensis	RchiOBHm_Chr4g0445881
rosa_laevigata	RLG00000005705
rosa_multiflora	Rmu_co8340621.1_g000001 Rmu_sc0000961.1_g000004 Rmu_sc0000961.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386320
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG427200 Rh4BG437000 Rh4BG437400 Rh4BG437500 Rh4CG453700 Rh4CG453800 Rh4CG454200 Rh4DG435500
rosa_wichuraiana	Rw4G036550 Rw4G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1188
AarI	CACCTGC	1 cut(s)	1411
AasI	GACNNNNNNGTC	1 cut(s)	421
Acc16I	TGCGCA	1 cut(s)	751
Acc36I	ACCTGC	2 cut(s)	771, 1411
AccB7I	CCANNNNNTGG	1 cut(s)	29
AciI	CCGC	2 cut(s)	1248, 1383
AclWI	GGATC	1 cut(s)	1374
AcoI	YGGCCR	2 cut(s)	3, 1017
AcsI	RAATTY	3 cut(s)	218, 260, 341
AcuI	CTGAAG	2 cut(s)	315, 606
AfiI	CCNNNNNNNGG	2 cut(s)	29, 459
AjnI	CCWGG	2 cut(s)	113, 770
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	8 cut(s)	128, 476, 584, 592, 1117, 1164, 1327, 1443
AluI	AGCT	8 cut(s)	128, 476, 584, 592, 1117, 1164, 1327, 1443
Alw26I	GTCTC	3 cut(s)	27, 284, 640
AlwI	GGATC	1 cut(s)	1374
AlwNI	CAGNNNCTG	1 cut(s)	1406
AoxI	GGCC	3 cut(s)	3, 992, 1017
ApeKI	GCWGC	2 cut(s)	153, 747
ApoI	RAATTY	3 cut(s)	218, 260, 341
ArsI	GACNNNNNNTTYG	6 cut(s)	367, 399, 625, 657, 838, 870
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	2 cut(s)	239, 837
AsuHPI	GGTGA	4 cut(s)	856, 1171, 1333, 1435
AsuII	TTCGAA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	2 cut(s)	5, 1019
BbsI	GAAGAC	1 cut(s)	989
BbvI	GCAGC	2 cut(s)	140, 734
BccI	CCATC	5 cut(s)	14, 898, 913, 1066, 1273
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	115, 772
BclI	TGATCA	2 cut(s)	546, 651
BcnI	CCSGG	2 cut(s)	239, 837
BcoDI	GTCTC	3 cut(s)	27, 284, 640
BfaI	CTAG	1 cut(s)	470
BfuAI	ACCTGC	2 cut(s)	771, 1411
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	2 cut(s)	154, 748
BlsI	GCNGC	2 cut(s)	155, 749
Bme1390I	CCNGG	4 cut(s)	115, 239, 772, 837
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	4 cut(s)	115, 239, 772, 837
BmsI	GCATC	2 cut(s)	191, 232
BpiI	GAAGAC	1 cut(s)	989
BpmI	CTGGAG	2 cut(s)	51, 754
Bpu14I	TTCGAA	1 cut(s)	490
BpuEI	CTTGAG	2 cut(s)	500, 1237
BpuMI	CCSGG	2 cut(s)	239, 837
Bsa29I	ATCGAT	1 cut(s)	1378
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 459
Bse1I	ACTGG	3 cut(s)	12, 41, 197
Bse3DI	GCAATG	3 cut(s)	306, 714, 1011
BseBI	CCWGG	2 cut(s)	115, 772
BseCI	ATCGAT	1 cut(s)	1378
BseGI	GGATG	2 cut(s)	247, 833
BseLI	CCNNNNNNNGG	2 cut(s)	29, 459
BseMI	GCAATG	3 cut(s)	306, 714, 1011
BseMII	CTCAG	3 cut(s)	279, 443, 891
BseNI	ACTGG	3 cut(s)	12, 41, 197
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	140, 734
BshFI	GGCC	3 cut(s)	5, 994, 1019
BshVI	ATCGAT	1 cut(s)	1378
BsiSI	CCGG	2 cut(s)	239, 836
BslFI	GGGAC	3 cut(s)	318, 852, 1214
BslI	CCNNNNNNNGG	2 cut(s)	29, 459
BsmAI	GTCTC	3 cut(s)	27, 284, 640
BsmFI	GGGAC	3 cut(s)	318, 852, 1214
BsmI	GAATGC	2 cut(s)	564, 1396
BsnI	GGCC	3 cut(s)	5, 994, 1019
Bsp119I	TTCGAA	1 cut(s)	490
Bsp143I	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
BspACI	CCGC	2 cut(s)	1248, 1383
BspANI	GGCC	3 cut(s)	5, 994, 1019
BspCNI	CTCAG	3 cut(s)	280, 442, 892
BspDI	ATCGAT	1 cut(s)	1378
BspMI	ACCTGC	2 cut(s)	771, 1411
BspPI	GGATC	1 cut(s)	1374
BspQI	GCTCTTC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	490
BsrDI	GCAATG	3 cut(s)	306, 714, 1011
BsrI	ACTGG	3 cut(s)	12, 41, 197
BssMI	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
Bst2UI	CCWGG	2 cut(s)	115, 772
Bst4CI	ACNGT	3 cut(s)	315, 637, 1174
Bst6I	CTCTTC	2 cut(s)	529, 582
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	4 cut(s)	288, 429, 894, 900
BstF5I	GGATG	2 cut(s)	247, 833
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	6 cut(s)	178, 412, 549, 654, 819, 1382
BstMAI	GTCTC	3 cut(s)	27, 284, 640
BstMBI	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
BstMWI	GCNNNNNNNGC	1 cut(s)	1391
BstNI	CCWGG	2 cut(s)	115, 772
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	113, 237, 770, 835
BstV1I	GCAGC	2 cut(s)	140, 734
BstV2I	GAAGAC	1 cut(s)	989
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	1378
BsuRI	GGCC	3 cut(s)	5, 994, 1019
BsuTUI	ATCGAT	1 cut(s)	1378
BtsCI	GGATG	2 cut(s)	247, 833
BveI	ACCTGC	2 cut(s)	771, 1411
Cac8I	GCNNGC	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	1406
CfoI	GCGC	1 cut(s)	752
Cfr13I	GGNCC	1 cut(s)	211
ClaI	ATCGAT	1 cut(s)	1378
CviAII	CATG	5 cut(s)	308, 371, 964, 1082, 1244
DdeI	CTNAG	4 cut(s)	288, 429, 894, 900
DpnI	GATC	6 cut(s)	177, 411, 548, 653, 818, 1381
DpnII	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	3, 1017
Eam1104I	CTCTTC	2 cut(s)	529, 582
EarI	CTCTTC	2 cut(s)	529, 582
EciI	GGCGGA	1 cut(s)	1372
Eco32I	GATATC	2 cut(s)	57, 336
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	315, 606
EcoRI	GAATTC	2 cut(s)	260, 341
EcoRII	CCWGG	2 cut(s)	113, 770
EcoRV	GATATC	2 cut(s)	57, 336
EcoT22I	ATGCAT	1 cut(s)	1083
FaeI	CATG	5 cut(s)	311, 374, 967, 1085, 1247
FaqI	GGGAC	3 cut(s)	318, 852, 1214
FatI	CATG	5 cut(s)	307, 370, 963, 1081, 1243
FauNDI	CATATG	2 cut(s)	743, 850
FbaI	TGATCA	2 cut(s)	546, 651
Fnu4HI	GCNGC	2 cut(s)	154, 748
FokI	GGATG	2 cut(s)	254, 840
Fsp4HI	GCNGC	2 cut(s)	154, 748
FspBI	CTAG	1 cut(s)	470
FspI	TGCGCA	1 cut(s)	751
GlaI	GCGC	1 cut(s)	751
GluI	GCNGC	2 cut(s)	154, 748
GsuI	CTGGAG	2 cut(s)	51, 754
HaeIII	GGCC	3 cut(s)	5, 994, 1019
HapII	CCGG	2 cut(s)	239, 836
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	5 cut(s)	311, 374, 967, 1085, 1247
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HincII	GTYRAC	4 cut(s)	360, 426, 450, 1312
HindII	GTYRAC	4 cut(s)	360, 426, 450, 1312
HindIII	AAGCTT	1 cut(s)	1325
HinfI	GANTC	7 cut(s)	433, 443, 521, 628, 688, 1240, 1403
HpaI	GTTAAC	1 cut(s)	450
HpaII	CCGG	2 cut(s)	239, 836
HphI	GGTGA	4 cut(s)	856, 1171, 1333, 1435
Hpy166II	GTNNAC	6 cut(s)	211, 360, 426, 450, 833, 1312
Hpy188I	TCNGA	7 cut(s)	340, 347, 414, 432, 633, 728, 736
Hpy188III	TCNNGA	8 cut(s)	30, 224, 281, 470, 479, 569, 692, 1412
Hpy8I	GTNNAC	6 cut(s)	211, 360, 426, 450, 833, 1312
HpyCH4III	ACNGT	3 cut(s)	315, 637, 1174
HpyCH4V	TGCA	7 cut(s)	63, 560, 719, 1081, 1112, 1420, 1435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1391
HpyF3I	CTNAG	4 cut(s)	288, 429, 894, 900
Hsp92II	CATG	5 cut(s)	311, 374, 967, 1085, 1247
HspAI	GCGC	1 cut(s)	750
Ksp22I	TGATCA	2 cut(s)	546, 651
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	2 cut(s)	367, 1122
Lsp1109I	GCAGC	2 cut(s)	140, 734
LweI	GCATC	2 cut(s)	191, 232
MaeI	CTAG	1 cut(s)	470
MaeIII	GTNAC	3 cut(s)	373, 844, 1450
MalI	GATC	6 cut(s)	177, 411, 548, 653, 818, 1381
MboI	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
MflI	RGATCY	1 cut(s)	409
MlsI	TGGCCA	2 cut(s)	5, 1019
MluCI	AATT	6 cut(s)	218, 260, 341, 404, 455, 1063
MluNI	TGGCCA	2 cut(s)	5, 1019
MlyI	GAGTC	4 cut(s)	452, 515, 682, 1234
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	9 cut(s)	157, 477, 618, 994, 1002, 1028, 1095, 1362, 1441
Mox20I	TGGCCA	2 cut(s)	5, 1019
Mph1103I	ATGCAT	1 cut(s)	1083
MscI	TGGCCA	2 cut(s)	5, 1019
MseI	TTAA	4 cut(s)	231, 254, 449, 798
MslI	CAYNNNNRTG	2 cut(s)	206, 1248
Msp20I	TGGCCA	2 cut(s)	5, 1019
MspI	CCGG	2 cut(s)	239, 836
MspR9I	CCNGG	4 cut(s)	115, 239, 772, 837
Mva1269I	GAATGC	2 cut(s)	564, 1396
MvaI	CCWGG	2 cut(s)	115, 772
MwoI	GCNNNNNNNGC	1 cut(s)	1391
NciI	CCSGG	2 cut(s)	239, 837
NdeI	CATATG	2 cut(s)	743, 850
NdeII	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
NlaIII	CATG	5 cut(s)	311, 374, 967, 1085, 1247
NmuCI	GTSAC	3 cut(s)	373, 844, 1450
NsbI	TGCGCA	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	1083
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	490
PaqCI	CACCTGC	1 cut(s)	1411
PciSI	GCTCTTC	1 cut(s)	582
PctI	GAATGC	2 cut(s)	564, 1396
PfeI	GAWTC	3 cut(s)	433, 628, 1403
PflMI	CCANNNNNTGG	1 cut(s)	29
PfoI	TCCNGGA	2 cut(s)	237, 770
PkrI	GCNGC	2 cut(s)	155, 749
PleI	GAGTC	4 cut(s)	451, 515, 682, 1234
PpsI	GAGTC	4 cut(s)	451, 515, 682, 1234
PsiI	TTATAA	1 cut(s)	1188
Psp6I	CCWGG	2 cut(s)	113, 770
PspGI	CCWGG	2 cut(s)	113, 770
PspPI	GGNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	1406
PsuI	RGATCY	1 cut(s)	409
RseI	CAYNNNNRTG	2 cut(s)	206, 1248
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	231, 254, 449, 798
SatI	GCNGC	2 cut(s)	154, 748
Sau3AI	GATC	6 cut(s)	175, 409, 546, 651, 816, 1379
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	4 cut(s)	452, 515, 682, 1234
ScrFI	CCNGG	4 cut(s)	115, 239, 772, 837
SfaNI	GCATC	2 cut(s)	191, 232
SfuI	TTCGAA	1 cut(s)	490
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	206, 1248
SmlI	CTYRAG	2 cut(s)	479, 1216
SmoI	CTYRAG	2 cut(s)	479, 1216
Sse9I	AATT	6 cut(s)	218, 260, 341, 404, 455, 1063
SsiI	CCGC	2 cut(s)	1248, 1383
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	4 cut(s)	113, 237, 770, 835
TaaI	ACNGT	3 cut(s)	315, 637, 1174
TaqI	TCGA	6 cut(s)	124, 185, 490, 568, 857, 1378
TasI	AATT	6 cut(s)	218, 260, 341, 404, 455, 1063
TfiI	GAWTC	3 cut(s)	433, 628, 1403
Tru1I	TTAA	4 cut(s)	231, 254, 449, 798
Tru9I	TTAA	4 cut(s)	231, 254, 449, 798
TseFI	GTSAC	3 cut(s)	373, 844, 1450
TseI	GCWGC	2 cut(s)	153, 747
Tsp45I	GTSAC	3 cut(s)	373, 844, 1450
TspDTI	ATGAA	8 cut(s)	273, 324, 543, 725, 878, 1040, 1145, 1355
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	3 cut(s)	218, 260, 341
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.