Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8340621.1

Orthogroup ID

OG0008792

Physical Location & Seq

Genomic Coordinates Forward (+)

44 .. 1006

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8340621.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggccatctccagttcttctccaagttctggagactggtctttggcttctttgatatcttgcagaaagtcccaccgaacacagaaaccccattccttcttctccattcccagctggaatgttcgagctttcaacatcatcaactcctctggctgcccttctccaatacttgaagatcaagcatcgaccaacttgccagtcattgaagtggacctgaaatttcaagaacttaaaatcccggatgccgaaaacttaaatgaattcctatgtgggctgtttcaagaccctgagactgaggcaatgggacatgaacagtatgagaaagccaagaagatatcagaattcagaccaaacaagtcaacattggagcatgtgacaaggtatttggtacgatcaaagaaatggggttcaattatttcagtttctaatgatttcaagacatatgatttgctgcctgatagctatacatgttctagactggtcactagttgcattagagctaggaagttcaagattgttagcactttgcttgaagtgtttaagtccaacggcgatgttgctctgctggcctttgattctgctatgagaggctacaatgagcttcacatgtataaaagtaccatgtctgtgtttgaaaaaatgatatctaccggaattggtccggattctgggtgttattgtaggataatggaagcttatttcaaaaagggtgactatagaaaagttgttgaattgtttcaggaactgaaaagtaggcaattagatttgacaccattgtcaactcagattctatgcgagtcgttaaccaaattggggaagcctctagaagctcttgagatttttcgaagtatgtcaaaggaaggcatttctttagactcttcaaagatatattctgttttgatcagttcatttgcgagcattcgagaagtgaaggtagctgaagagctgtttgaagaagcagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

321

Amino Acids

36.25

Weight (kDa)

6.56

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13770
fragaria_vesca	FvH4_4g36140
malus_domestica	MD13G1010900.v1.1 MD16G1008400.v1.1
prunus_persica	Prupe.1G342100_v2.0.a1
pyrus_communis	pycom16g00820
rosa_chinensis	RchiOBHm_Chr4g0445881
rosa_laevigata	RLG00000005705
rosa_multiflora	Rmu_co8340621.1_g000001 Rmu_sc0000961.1_g000004 Rmu_sc0000961.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386320
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG427200 Rh4BG437000 Rh4BG437400 Rh4BG437500 Rh4CG453700 Rh4CG453800 Rh4CG454200 Rh4DG435500
rosa_wichuraiana	Rw4G036550 Rw4G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	661
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	218, 260, 341
AcuI	CTGAAG	1 cut(s)	960
AfaI	GTAC	2 cut(s)	390, 619
AfiI	CCNNNNNNNGG	3 cut(s)	29, 668, 813
AflIII	ACRYGT	2 cut(s)	467, 606
AhlI	ACTAGT	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	9 cut(s)	114, 128, 462, 500, 601, 695, 830, 938, 946
AluI	AGCT	9 cut(s)	114, 128, 462, 500, 601, 695, 830, 938, 946
Alw26I	GTCTC	2 cut(s)	27, 284
AlwNI	CAGNNNCTG	1 cut(s)	745
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	2 cut(s)	3, 567
ApeKI	GCWGC	2 cut(s)	153, 451
ApoI	RAATTY	3 cut(s)	218, 260, 341
ArsI	GACNNNNNNTTYG	4 cut(s)	367, 399, 430, 462
Asp700I	GAANNNNTTC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	211, 659
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	1 cut(s)	844
AvaII	GGWCC	2 cut(s)	211, 659
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	140, 438
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	565
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BclI	TGATCA	1 cut(s)	900
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	27, 284
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	4 cut(s)	474, 486, 501, 824
BfmI	CTRYAG	1 cut(s)	715
BisI	GCNGC	2 cut(s)	154, 452
BlsI	GCNGC	2 cut(s)	155, 453
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	211, 659
BmgT120I	GGNCC	2 cut(s)	211, 659
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	191, 232
BpmI	CTGGAG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	239
BsaWI	WCCGGW	2 cut(s)	650, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 668, 813
Bse1I	ACTGG	4 cut(s)	12, 41, 197, 483
Bse3DI	GCAATG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	661
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	29, 668, 813
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	279, 285, 797
BseNI	ACTGG	4 cut(s)	12, 41, 197, 483
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	140, 438
BseYI	CCCAGC	1 cut(s)	110
BshFI	GGCC	2 cut(s)	5, 569
BsiSI	CCGG	3 cut(s)	239, 651, 662
BslFI	GGGAC	2 cut(s)	55, 318
BslI	CCNNNNNNNGG	3 cut(s)	29, 668, 813
BsmAI	GTCTC	2 cut(s)	27, 284
BsmFI	GGGAC	2 cut(s)	55, 318
BsmI	GAATGC	1 cut(s)	918
BsnI	GGCC	2 cut(s)	5, 569
Bsp119I	TTCGAA	1 cut(s)	844
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	175, 392, 900
BspANI	GGCC	2 cut(s)	5, 569
BspCNI	CTCAG	3 cut(s)	280, 286, 796
BspEI	TCCGGA	1 cut(s)	661
BspQI	GCTCTTC	1 cut(s)	936
BspT104I	TTCGAA	1 cut(s)	844
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	4 cut(s)	12, 41, 197, 483
BssMI	GATC	3 cut(s)	175, 392, 900
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	2 cut(s)	883, 936
BstBI	TTCGAA	1 cut(s)	844
BstC8I	GCNNGC	2 cut(s)	567, 916
BstDEI	CTNAG	3 cut(s)	288, 294, 783
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	178, 395, 903
BstMAI	GTCTC	2 cut(s)	27, 284
BstMBI	GATC	3 cut(s)	175, 392, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNSI	RCATGY	3 cut(s)	374, 471, 610
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	715
BstV1I	GCAGC	2 cut(s)	140, 438
BsuRI	GGCC	2 cut(s)	5, 569
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	567, 916
CaiI	CAGNNNCTG	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	211, 659
Csp6I	GTAC	2 cut(s)	389, 618
CviAII	CATG	5 cut(s)	308, 371, 468, 607, 622
CviQI	GTAC	2 cut(s)	389, 618
DdeI	CTNAG	3 cut(s)	288, 294, 783
DpnI	GATC	3 cut(s)	177, 394, 902
DpnII	GATC	3 cut(s)	175, 392, 900
DrdI	GACNNNNNNGTC	1 cut(s)	775
DseDI	GACNNNNNNGTC	1 cut(s)	775
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	883, 936
EarI	CTCTTC	2 cut(s)	883, 936
Eco32I	GATATC	3 cut(s)	57, 336, 645
Eco47I	GGWCC	2 cut(s)	211, 659
Eco57I	CTGAAG	1 cut(s)	960
EcoRI	GAATTC	2 cut(s)	260, 341
EcoRV	GATATC	3 cut(s)	57, 336, 645
FaeI	CATG	5 cut(s)	311, 374, 471, 610, 625
FaqI	GGGAC	2 cut(s)	55, 318
FatI	CATG	5 cut(s)	307, 370, 467, 606, 621
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	900
Fnu4HI	GCNGC	2 cut(s)	154, 452
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	154, 452
FspBI	CTAG	4 cut(s)	474, 486, 501, 824
GluI	GCNGC	2 cut(s)	154, 452
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	5, 569
HapII	CCGG	3 cut(s)	239, 651, 662
Hin1II	CATG	5 cut(s)	311, 374, 471, 610, 625
HincII	GTYRAC	3 cut(s)	360, 780, 804
HindII	GTYRAC	3 cut(s)	360, 780, 804
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	5 cut(s)	575, 665, 787, 797, 875
HpaI	GTTAAC	1 cut(s)	804
HpaII	CCGG	3 cut(s)	239, 651, 662
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	4 cut(s)	211, 360, 780, 804
Hpy188I	TCNGA	3 cut(s)	340, 347, 786
Hpy8I	GTNNAC	4 cut(s)	211, 360, 780, 804
HpyAV	CCTTC	4 cut(s)	106, 168, 854, 925
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	63, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	3 cut(s)	288, 294, 783
Hsp92II	CATG	5 cut(s)	311, 374, 471, 610, 625
Kpn2I	TCCGGA	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	900
KspAI	GTTAAC	1 cut(s)	804
Kzo9I	GATC	3 cut(s)	175, 392, 900
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	2 cut(s)	140, 438
LweI	GCATC	2 cut(s)	191, 232
MaeI	CTAG	4 cut(s)	474, 486, 501, 824
MaeIII	GTNAC	3 cut(s)	373, 481, 710
MalI	GATC	3 cut(s)	177, 394, 902
MboI	GATC	3 cut(s)	175, 392, 900
MboII	GAAGA	6 cut(s)	9, 91, 185, 343, 870, 953
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	218, 260, 341, 411, 654, 731, 758, 809
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	806, 869
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	4 cut(s)	157, 289, 581, 831
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	231, 254, 540, 803
MslI	CAYNNNNRTG	2 cut(s)	206, 626
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	3 cut(s)	239, 651, 662
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	918
MwoI	GCNNNNNNNGC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	3 cut(s)	175, 392, 900
NlaIII	CATG	5 cut(s)	311, 374, 471, 610, 625
NmuCI	GTSAC	3 cut(s)	373, 481, 710
NspI	RCATGY	3 cut(s)	374, 471, 610
NspV	TTCGAA	1 cut(s)	844
PciI	ACATGT	2 cut(s)	467, 606
PciSI	GCTCTTC	1 cut(s)	936
PctI	GAATGC	1 cut(s)	918
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	575, 665, 787
PflMI	CCANNNNNTGG	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	155, 453
PleI	GAGTC	2 cut(s)	805, 869
PpsI	GAGTC	2 cut(s)	805, 869
PscI	ACATGT	2 cut(s)	467, 606
PspFI	CCCAGC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	211, 659
PstNI	CAGNNNCTG	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	114
RsaI	GTAC	2 cut(s)	390, 619
RsaNI	GTAC	2 cut(s)	389, 618
RseI	CAYNNNNRTG	2 cut(s)	206, 626
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	4 cut(s)	231, 254, 540, 803
SatI	GCNGC	2 cut(s)	154, 452
Sau3AI	GATC	3 cut(s)	175, 392, 900
Sau96I	GGNCC	2 cut(s)	211, 659
SchI	GAGTC	2 cut(s)	806, 869
ScrFI	CCNGG	1 cut(s)	239
SfaNI	GCATC	2 cut(s)	191, 232
SfcI	CTRYAG	1 cut(s)	715
SfuI	TTCGAA	1 cut(s)	844
SinI	GGWCC	2 cut(s)	211, 659
SmiMI	CAYNNNNRTG	2 cut(s)	206, 626
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	8 cut(s)	218, 260, 341, 411, 654, 731, 758, 809
SspMI	CTAG	4 cut(s)	474, 486, 501, 824
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	124, 185, 844, 922
TasI	AATT	8 cut(s)	218, 260, 341, 411, 654, 731, 758, 809
TfiI	GAWTC	3 cut(s)	575, 665, 787
Tru1I	TTAA	4 cut(s)	231, 254, 540, 803
Tru9I	TTAA	4 cut(s)	231, 254, 540, 803
TseFI	GTSAC	3 cut(s)	373, 481, 710
TseI	GCWGC	2 cut(s)	153, 451
Tsp45I	GTSAC	3 cut(s)	373, 481, 710
TspDTI	ATGAA	3 cut(s)	273, 324, 897
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	211, 659
XapI	RAATTY	3 cut(s)	218, 260, 341
XbaI	TCTAGA	2 cut(s)	473, 823
XceI	RCATGY	3 cut(s)	374, 471, 610
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	4 cut(s)	474, 486, 501, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.