Pentatricopeptide repeat-containing protein At5g13770
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13770 |
| fragaria_vesca | FvH4_4g36140 |
| malus_domestica | MD13G1010900.v1.1 MD16G1008400.v1.1 |
| prunus_persica | Prupe.1G342100_v2.0.a1 |
| pyrus_communis | pycom16g00820 |
| rosa_chinensis | RchiOBHm_Chr4g0445881 |
| rosa_laevigata | RLG00000005705 |
| rosa_multiflora | Rmu_co8340621.1_g000001 Rmu_sc0000961.1_g000004 Rmu_sc0000961.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00386320 |
| rosa_rugosa | Rorug04G0365400 |
| rosa_samantha | Rh4AG427200 Rh4BG437000 Rh4BG437400 Rh4BG437500 Rh4CG453700 Rh4CG453800 Rh4CG454200 Rh4DG435500 |
| rosa_wichuraiana | Rw4G036550 Rw4G036580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1542 |
| AarI | CACCTGC | 1 cut(s) | 1765 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 775 |
| Acc16I | TGCGCA | 1 cut(s) | 1105 |
| Acc36I | ACCTGC | 2 cut(s) | 1125, 1765 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 29 |
| AccIII | TCCGGA | 1 cut(s) | 661 |
| AciI | CCGC | 2 cut(s) | 1602, 1737 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1371 |
| AcsI | RAATTY | 3 cut(s) | 218, 260, 341 |
| AcuI | CTGAAG | 1 cut(s) | 960 |
| AfaI | GTAC | 2 cut(s) | 390, 619 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 29, 668, 813 |
| AflIII | ACRYGT | 2 cut(s) | 467, 606 |
| AhlI | ACTAGT | 1 cut(s) | 485 |
| AjnI | CCWGG | 1 cut(s) | 1124 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 219, 251 |
| Alw26I | GTCTC | 3 cut(s) | 27, 284, 994 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 745, 1760 |
| Aor13HI | TCCGGA | 1 cut(s) | 661 |
| AoxI | GGCC | 4 cut(s) | 3, 567, 1346, 1371 |
| ApeKI | GCWGC | 3 cut(s) | 153, 451, 1101 |
| ApoI | RAATTY | 3 cut(s) | 218, 260, 341 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 367, 399, 430, 462, 979, 1011, 1192, 1224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 735 |
| AspLEI | GCGC | 1 cut(s) | 1106 |
| AspS9I | GGNCC | 3 cut(s) | 211, 659, 1734 |
| AsuC2I | CCSGG | 2 cut(s) | 239, 1191 |
| AsuHPI | GGTGA | 5 cut(s) | 722, 1210, 1525, 1687, 1789 |
| AsuII | TTCGAA | 1 cut(s) | 844 |
| AvaII | GGWCC | 3 cut(s) | 211, 659, 1734 |
| BalI | TGGCCA | 2 cut(s) | 5, 1373 |
| BbsI | GAAGAC | 1 cut(s) | 1343 |
| BbvI | GCAGC | 3 cut(s) | 140, 438, 1088 |
| BccI | CCATC | 5 cut(s) | 14, 1252, 1267, 1420, 1627 |
| BceAI | ACGGC | 1 cut(s) | 565 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 175, 209 |
| BciT130I | CCWGG | 1 cut(s) | 1126 |
| BclI | TGATCA | 2 cut(s) | 900, 1005 |
| BcnI | CCSGG | 2 cut(s) | 239, 1191 |
| BcoDI | GTCTC | 3 cut(s) | 27, 284, 994 |
| BcuI | ACTAGT | 1 cut(s) | 485 |
| BfaI | CTAG | 4 cut(s) | 474, 486, 501, 824 |
| BfmI | CTRYAG | 1 cut(s) | 715 |
| BfuAI | ACCTGC | 2 cut(s) | 1125, 1765 |
| BisI | GCNGC | 3 cut(s) | 154, 452, 1102 |
| BlsI | GCNGC | 3 cut(s) | 155, 453, 1103 |
| Bme1390I | CCNGG | 3 cut(s) | 239, 1126, 1191 |
| Bme18I | GGWCC | 3 cut(s) | 211, 659, 1734 |
| BmgT120I | GGNCC | 3 cut(s) | 211, 659, 1734 |
| BmrFI | CCNGG | 3 cut(s) | 239, 1126, 1191 |
| BmsI | GCATC | 2 cut(s) | 191, 232 |
| BpiI | GAAGAC | 1 cut(s) | 1343 |
| BpmI | CTGGAG | 2 cut(s) | 51, 1108 |
| Bpu14I | TTCGAA | 1 cut(s) | 844 |
| BpuEI | CTTGAG | 2 cut(s) | 854, 1591 |
| BpuMI | CCSGG | 2 cut(s) | 239, 1191 |
| BsaWI | WCCGGW | 3 cut(s) | 650, 661, 1504 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 29, 668, 813 |
| Bse1I | ACTGG | 4 cut(s) | 12, 41, 197, 483 |
| Bse3DI | GCAATG | 3 cut(s) | 306, 1068, 1365 |
| BseAI | TCCGGA | 1 cut(s) | 661 |
| BseBI | CCWGG | 1 cut(s) | 1126 |
| BseGI | GGATG | 3 cut(s) | 247, 1187, 1450 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 29, 668, 813 |
| BseMI | GCAATG | 3 cut(s) | 306, 1068, 1365 |
| BseMII | CTCAG | 4 cut(s) | 279, 285, 797, 1245 |
| BseNI | ACTGG | 4 cut(s) | 12, 41, 197, 483 |
| BseRI | GAGGAG | 1 cut(s) | 136 |
| BseXI | GCAGC | 3 cut(s) | 140, 438, 1088 |
| BseYI | CCCAGC | 1 cut(s) | 110 |
| BshFI | GGCC | 4 cut(s) | 5, 569, 1348, 1373 |
| BsiSI | CCGG | 5 cut(s) | 239, 651, 662, 1190, 1505 |
| BslFI | GGGAC | 4 cut(s) | 55, 318, 1206, 1568 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 29, 668, 813 |
| BsmAI | GTCTC | 3 cut(s) | 27, 284, 994 |
| BsmFI | GGGAC | 4 cut(s) | 55, 318, 1206, 1568 |
| BsmI | GAATGC | 2 cut(s) | 918, 1750 |
| BsnI | GGCC | 4 cut(s) | 5, 569, 1348, 1373 |
| Bsp119I | TTCGAA | 1 cut(s) | 844 |
| Bsp13I | TCCGGA | 1 cut(s) | 661 |
| Bsp143I | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| BspACI | CCGC | 2 cut(s) | 1602, 1737 |
| BspANI | GGCC | 4 cut(s) | 5, 569, 1348, 1373 |
| BspCNI | CTCAG | 4 cut(s) | 280, 286, 796, 1246 |
| BspEI | TCCGGA | 1 cut(s) | 661 |
| BspMI | ACCTGC | 2 cut(s) | 1125, 1765 |
| BspQI | GCTCTTC | 1 cut(s) | 936 |
| BspT104I | TTCGAA | 1 cut(s) | 844 |
| BsrDI | GCAATG | 3 cut(s) | 306, 1068, 1365 |
| BsrI | ACTGG | 4 cut(s) | 12, 41, 197, 483 |
| BssMI | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| Bst2UI | CCWGG | 1 cut(s) | 1126 |
| Bst4CI | ACNGT | 2 cut(s) | 315, 991 |
| Bst6I | CTCTTC | 2 cut(s) | 883, 936 |
| BstBI | TTCGAA | 1 cut(s) | 844 |
| BstC8I | GCNNGC | 2 cut(s) | 567, 916 |
| BstDEI | CTNAG | 5 cut(s) | 288, 294, 783, 1248, 1254 |
| BstF5I | GGATG | 3 cut(s) | 247, 1187, 1450 |
| BstHHI | GCGC | 1 cut(s) | 1106 |
| BstKTI | GATC | 5 cut(s) | 178, 395, 903, 1008, 1173 |
| BstMAI | GTCTC | 3 cut(s) | 27, 284, 994 |
| BstMBI | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 566, 1745 |
| BstNI | CCWGG | 1 cut(s) | 1126 |
| BstNSI | RCATGY | 3 cut(s) | 374, 471, 610 |
| BstSCI | CCNGG | 3 cut(s) | 237, 1124, 1189 |
| BstSFI | CTRYAG | 1 cut(s) | 715 |
| BstV1I | GCAGC | 3 cut(s) | 140, 438, 1088 |
| BstV2I | GAAGAC | 1 cut(s) | 1343 |
| BsuRI | GGCC | 4 cut(s) | 5, 569, 1348, 1373 |
| BtgZI | GCGATG | 1 cut(s) | 567 |
| BtsCI | GGATG | 3 cut(s) | 247, 1187, 1450 |
| BveI | ACCTGC | 2 cut(s) | 1125, 1765 |
| Cac8I | GCNNGC | 2 cut(s) | 567, 916 |
| CaiI | CAGNNNCTG | 2 cut(s) | 745, 1760 |
| CfoI | GCGC | 1 cut(s) | 1106 |
| Cfr13I | GGNCC | 3 cut(s) | 211, 659, 1734 |
| CpoI | CGGWCCG | 1 cut(s) | 1734 |
| Csp6I | GTAC | 2 cut(s) | 389, 618 |
| CspI | CGGWCCG | 1 cut(s) | 1734 |
| CviAII | CATG | 8 cut(s) | 308, 371, 468, 607, 622, 1318, 1436, 1598 |
| CviQI | GTAC | 2 cut(s) | 389, 618 |
| DdeI | CTNAG | 5 cut(s) | 288, 294, 783, 1248, 1254 |
| DpnI | GATC | 5 cut(s) | 177, 394, 902, 1007, 1172 |
| DpnII | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 775 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 775 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1371 |
| Eam1104I | CTCTTC | 2 cut(s) | 883, 936 |
| EarI | CTCTTC | 2 cut(s) | 883, 936 |
| EciI | GGCGGA | 1 cut(s) | 1726 |
| Eco32I | GATATC | 3 cut(s) | 57, 336, 645 |
| Eco47I | GGWCC | 3 cut(s) | 211, 659, 1734 |
| Eco57I | CTGAAG | 1 cut(s) | 960 |
| EcoRI | GAATTC | 2 cut(s) | 260, 341 |
| EcoRII | CCWGG | 1 cut(s) | 1124 |
| EcoRV | GATATC | 3 cut(s) | 57, 336, 645 |
| EcoT22I | ATGCAT | 1 cut(s) | 1437 |
| FaeI | CATG | 8 cut(s) | 311, 374, 471, 610, 625, 1321, 1439, 1601 |
| FaqI | GGGAC | 4 cut(s) | 55, 318, 1206, 1568 |
| FatI | CATG | 8 cut(s) | 307, 370, 467, 606, 621, 1317, 1435, 1597 |
| FauNDI | CATATG | 3 cut(s) | 442, 1097, 1204 |
| FbaI | TGATCA | 2 cut(s) | 900, 1005 |
| Fnu4HI | GCNGC | 3 cut(s) | 154, 452, 1102 |
| FokI | GGATG | 3 cut(s) | 254, 1194, 1457 |
| Fsp4HI | GCNGC | 3 cut(s) | 154, 452, 1102 |
| FspBI | CTAG | 4 cut(s) | 474, 486, 501, 824 |
| FspI | TGCGCA | 1 cut(s) | 1105 |
| GlaI | GCGC | 1 cut(s) | 1105 |
| GluI | GCNGC | 3 cut(s) | 154, 452, 1102 |
| GsaI | CCCAGC | 1 cut(s) | 114 |
| GsuI | CTGGAG | 2 cut(s) | 51, 1108 |
| HaeIII | GGCC | 4 cut(s) | 5, 569, 1348, 1373 |
| HapII | CCGG | 5 cut(s) | 239, 651, 662, 1190, 1505 |
| HhaI | GCGC | 1 cut(s) | 1106 |
| Hin1II | CATG | 8 cut(s) | 311, 374, 471, 610, 625, 1321, 1439, 1601 |
| Hin6I | GCGC | 1 cut(s) | 1104 |
| HinP1I | GCGC | 1 cut(s) | 1104 |
| HincII | GTYRAC | 4 cut(s) | 360, 780, 804, 1666 |
| HindII | GTYRAC | 4 cut(s) | 360, 780, 804, 1666 |
| HindIII | AAGCTT | 2 cut(s) | 693, 1679 |
| HinfI | GANTC | 9 cut(s) | 575, 665, 787, 797, 875, 982, 1042, 1594, 1757 |
| HpaI | GTTAAC | 1 cut(s) | 804 |
| HpaII | CCGG | 5 cut(s) | 239, 651, 662, 1190, 1505 |
| HphI | GGTGA | 5 cut(s) | 722, 1210, 1525, 1687, 1789 |
| Hpy166II | GTNNAC | 6 cut(s) | 211, 360, 780, 804, 1187, 1666 |
| Hpy188I | TCNGA | 7 cut(s) | 340, 347, 786, 987, 1082, 1090, 1756 |
| Hpy8I | GTNNAC | 6 cut(s) | 211, 360, 780, 804, 1187, 1666 |
| HpyCH4III | ACNGT | 2 cut(s) | 315, 991 |
| HpyCH4V | TGCA | 7 cut(s) | 63, 492, 1073, 1435, 1466, 1774, 1789 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 566, 1745 |
| HpyF3I | CTNAG | 5 cut(s) | 288, 294, 783, 1248, 1254 |
| Hsp92II | CATG | 8 cut(s) | 311, 374, 471, 610, 625, 1321, 1439, 1601 |
| HspAI | GCGC | 1 cut(s) | 1104 |
| Kpn2I | TCCGGA | 1 cut(s) | 661 |
| Ksp22I | TGATCA | 2 cut(s) | 900, 1005 |
| KspAI | GTTAAC | 1 cut(s) | 804 |
| Kzo9I | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| LguI | GCTCTTC | 1 cut(s) | 936 |
| LmnI | GCTCC | 2 cut(s) | 367, 1476 |
| Lsp1109I | GCAGC | 3 cut(s) | 140, 438, 1088 |
| LweI | GCATC | 2 cut(s) | 191, 232 |
| MaeI | CTAG | 4 cut(s) | 474, 486, 501, 824 |
| MaeIII | GTNAC | 5 cut(s) | 373, 481, 710, 1198, 1804 |
| MalI | GATC | 5 cut(s) | 177, 394, 902, 1007, 1172 |
| MboI | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| MlsI | TGGCCA | 2 cut(s) | 5, 1373 |
| MluCI | AATT | 9 cut(s) | 218, 260, 341, 411, 654, 731, 758, 809, 1417 |
| MluNI | TGGCCA | 2 cut(s) | 5, 1373 |
| MlyI | GAGTC | 4 cut(s) | 806, 869, 1036, 1588 |
| MmeI | TCCRAC | 2 cut(s) | 570, 1010 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 1373 |
| Mph1103I | ATGCAT | 1 cut(s) | 1437 |
| MroI | TCCGGA | 1 cut(s) | 661 |
| MroXI | GAANNNNTTC | 1 cut(s) | 735 |
| MscI | TGGCCA | 2 cut(s) | 5, 1373 |
| MseI | TTAA | 5 cut(s) | 231, 254, 540, 803, 1152 |
| MslI | CAYNNNNRTG | 3 cut(s) | 206, 626, 1602 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 1373 |
| MspA1I | CMGCKG | 1 cut(s) | 114 |
| MspI | CCGG | 5 cut(s) | 239, 651, 662, 1190, 1505 |
| MspR9I | CCNGG | 3 cut(s) | 239, 1126, 1191 |
| Mva1269I | GAATGC | 2 cut(s) | 918, 1750 |
| MvaI | CCWGG | 1 cut(s) | 1126 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 566, 1745 |
| NciI | CCSGG | 2 cut(s) | 239, 1191 |
| NdeI | CATATG | 3 cut(s) | 442, 1097, 1204 |
| NdeII | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| NlaIII | CATG | 8 cut(s) | 311, 374, 471, 610, 625, 1321, 1439, 1601 |
| NmuCI | GTSAC | 5 cut(s) | 373, 481, 710, 1198, 1804 |
| NsbI | TGCGCA | 1 cut(s) | 1105 |
| NsiI | ATGCAT | 1 cut(s) | 1437 |
| NspI | RCATGY | 3 cut(s) | 374, 471, 610 |
| NspV | TTCGAA | 1 cut(s) | 844 |
| PaqCI | CACCTGC | 1 cut(s) | 1765 |
| PciI | ACATGT | 2 cut(s) | 467, 606 |
| PciSI | GCTCTTC | 1 cut(s) | 936 |
| PctI | GAATGC | 2 cut(s) | 918, 1750 |
| PdmI | GAANNNNTTC | 1 cut(s) | 735 |
| PfeI | GAWTC | 5 cut(s) | 575, 665, 787, 982, 1757 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 29 |
| PfoI | TCCNGGA | 2 cut(s) | 237, 1124 |
| PkrI | GCNGC | 3 cut(s) | 155, 453, 1103 |
| PleI | GAGTC | 4 cut(s) | 805, 869, 1036, 1588 |
| PpsI | GAGTC | 4 cut(s) | 805, 869, 1036, 1588 |
| PscI | ACATGT | 2 cut(s) | 467, 606 |
| PsiI | TTATAA | 1 cut(s) | 1542 |
| Psp6I | CCWGG | 1 cut(s) | 1124 |
| PspFI | CCCAGC | 1 cut(s) | 110 |
| PspGI | CCWGG | 1 cut(s) | 1124 |
| PspPI | GGNCC | 3 cut(s) | 211, 659, 1734 |
| PstNI | CAGNNNCTG | 2 cut(s) | 745, 1760 |
| PvuII | CAGCTG | 1 cut(s) | 114 |
| RsaI | GTAC | 2 cut(s) | 390, 619 |
| RsaNI | GTAC | 2 cut(s) | 389, 618 |
| RseI | CAYNNNNRTG | 3 cut(s) | 206, 626, 1602 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1734 |
| RsrII | CGGWCCG | 1 cut(s) | 1734 |
| SapI | GCTCTTC | 1 cut(s) | 936 |
| SaqAI | TTAA | 5 cut(s) | 231, 254, 540, 803, 1152 |
| SatI | GCNGC | 3 cut(s) | 154, 452, 1102 |
| Sau3AI | GATC | 5 cut(s) | 175, 392, 900, 1005, 1170 |
| Sau96I | GGNCC | 3 cut(s) | 211, 659, 1734 |
| SchI | GAGTC | 4 cut(s) | 806, 869, 1036, 1588 |
| ScrFI | CCNGG | 3 cut(s) | 239, 1126, 1191 |
| SfaNI | GCATC | 2 cut(s) | 191, 232 |
| SfcI | CTRYAG | 1 cut(s) | 715 |
| SfuI | TTCGAA | 1 cut(s) | 844 |
| SinI | GGWCC | 3 cut(s) | 211, 659, 1734 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 206, 626, 1602 |
| SmlI | CTYRAG | 2 cut(s) | 833, 1570 |
| SmoI | CTYRAG | 2 cut(s) | 833, 1570 |
| SpeI | ACTAGT | 1 cut(s) | 485 |
| Sse9I | AATT | 9 cut(s) | 218, 260, 341, 411, 654, 731, 758, 809, 1417 |
| SsiI | CCGC | 2 cut(s) | 1602, 1737 |
| SspMI | CTAG | 4 cut(s) | 474, 486, 501, 824 |
| StyD4I | CCNGG | 3 cut(s) | 237, 1124, 1189 |
| TaaI | ACNGT | 2 cut(s) | 315, 991 |
| TaqI | TCGA | 5 cut(s) | 124, 185, 844, 922, 1211 |
| TaqII | GACCGA | 1 cut(s) | 1722 |
| TasI | AATT | 9 cut(s) | 218, 260, 341, 411, 654, 731, 758, 809, 1417 |
| TfiI | GAWTC | 5 cut(s) | 575, 665, 787, 982, 1757 |
| Tru1I | TTAA | 5 cut(s) | 231, 254, 540, 803, 1152 |
| Tru9I | TTAA | 5 cut(s) | 231, 254, 540, 803, 1152 |
| TseFI | GTSAC | 5 cut(s) | 373, 481, 710, 1198, 1804 |
| TseI | GCWGC | 3 cut(s) | 153, 451, 1101 |
| Tsp45I | GTSAC | 5 cut(s) | 373, 481, 710, 1198, 1804 |
| TspDTI | ATGAA | 8 cut(s) | 273, 324, 897, 1079, 1232, 1394, 1499, 1709 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 3 cut(s) | 211, 659, 1734 |
| XapI | RAATTY | 3 cut(s) | 218, 260, 341 |
| XbaI | TCTAGA | 2 cut(s) | 473, 823 |
| XceI | RCATGY | 3 cut(s) | 374, 471, 610 |
| XmnI | GAANNNNTTC | 1 cut(s) | 735 |
| XspI | CTAG | 4 cut(s) | 474, 486, 501, 824 |
| Zsp2I | ATGCAT | 1 cut(s) | 1437 |