Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005436

Physical Location & Seq

Genomic Coordinates Forward (+)

1948003 .. 1951510

Gene Structure 3508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1027700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTTCCAACTGAGTTGCTTGCAGTCCAGCATTATGAGCACTTAAATAATCTGCTTGAAAATATGGAGGATGTTGAACAAAAACCTTCAATTGCTTTACTAACCGGCTCAACCCCATCAAAACAATCACGGATAATTCTTGAGGCATGGATTAATGTCCAGTTCTTTTGTTTTCTTGAGTATAATGGTCTCAGGACTGGAGAGATATCGATGGTCATTGGAACCACCAGTTTGATATCTGACAAAATAGAGTTCTCTGCATTACGCATTGCAGTGGTGGATGAACAACATCGTTTTGGTGTGATCCAGAGAGGACGGCTTAACAGTAAGCTATACTATACCTCTGTAAATTCTAGAATGGTAGCTGCCAATTCAGATGTGACCTCCAAAGGCGACAACCATATGGCTCCTCATGTTCTTGCCATGTCAGCTACTCCTATACCGAGGACACTTGCTCTGGCTTTATATGGTGATATGTCATTGACACAGATAACCGACTTACCTCCAGGAAGAATACCAGTTGAGACGTTCATCATTGAAGGAAATGACAATGGATTTGAGGATGTTTATGAGATGATGCTGGATGAGTTAAAAGGAGGAGGGAGAGTCTATCTTGTGTATCCAGTTATTGAACAATCTGAACAGCTGCCACAACTTCGTGCAGCTGCAGCAGATTTTGAAGCTATATCTGATAGGTTTCAGGGCTACACTTGTGGATTGTTGCATGGAAGGATGAAGAGTGATGAGAAAGATGAAGCATTGAGAAAGTTCAGATCTGGGGAAACAAATATACTGCTTTCCACACAAGTTATTGAGATTGGTGTTGATGTTCCCGATGCATCTATGATGGTTGTTATGAACGCTGAGAGATTTGGGATAGCTCAGTTACACCAACTTAGAGGACGAGTTGGACGAGGAGTGAGAAAGTCTAAATGTATACTGTTAGCATCTTCTTCCAGTAGTCTAACTCGGTTGAAGGTCCTGGGGAAATCATCAGATGGTTTTTACTTGGCAAACATGGACCTTCTTCTACGTGGACCTGGTAACTTGCTTGGCAAGAAACAATCAGGACATCTTCCAGAGTTTCCTATTGCAAGATTGGAAGTAGATGGCAATATCTTACAGGAAGCACATCTTGCTGGTCTGAAAGTTTTAGGCGCTTCCCATGATTTGGAGCAATTCCCGATCCTTAAGGCAGAGCTTAGCATGAGAGAGCCGCTCTCTATTCTGGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

413

Amino Acids

45.48

Weight (kDa)

5.66

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	1 - 150	2.3e-06	DEAD/DEAH box helicase
Helicase_C	PF00271	196 - 305	1e-19	Helicase conserved C-terminal domain
RecG_dom3_C	PF19833	332 - 387	8.1e-08	ATP-dependent DNA helicase RecG, domain 3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01440
fragaria_vesca	FvH4_4g32470 FvH4_4g32470
malus_domestica	MD13G1025100.v1.1 MD16G1027600.v1.1 MD16G1027700.v1.1
prunus_persica	Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1
pyrus_communis	pycom13g02340 pycom16g02340
rosa_chinensis	RchiOBHm_Chr4g0441331
rosa_laevigata	RLG00000006101
rosa_multiflora	Rmu_co8457807.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382220
rosa_rugosa	Rorug04G0332400
rosa_samantha	Rh4AG384400 Rh4BG398500 Rh4CG413600 Rh4DG391100
rosa_wichuraiana	Rw4G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1171
AccBSI	CCGCTC	1 cut(s)	1219
AccI	GTMKAC	1 cut(s)	937
AciI	CCGC	1 cut(s)	1217
AclWI	GGATC	2 cut(s)	298, 1180
AcsI	RAATTY	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	1171
AflII	CTTAAG	1 cut(s)	1190
AgsI	TTSAA	7 cut(s)	59, 77, 90, 539, 632, 680, 976
AjnI	CCWGG	3 cut(s)	505, 981, 1039
AluBI	AGCT	8 cut(s)	331, 365, 431, 646, 665, 683, 881, 1201
AluI	AGCT	8 cut(s)	331, 365, 431, 646, 665, 683, 881, 1201
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	194, 518
AlwI	GGATC	2 cut(s)	298, 1180
ApeKI	GCWGC	5 cut(s)	365, 646, 662, 665, 668
ApoI	RAATTY	1 cut(s)	349
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	1160
AspS9I	GGNCC	3 cut(s)	979, 1021, 1037
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	3 cut(s)	979, 1021, 1037
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	5 cut(s)	352, 633, 652, 674, 680
BccI	CCATC	5 cut(s)	124, 205, 841, 992, 1103
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	3 cut(s)	507, 983, 1041
BciVI	GTATCC	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	194, 518
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	1161
BfrI	CTTAAG	1 cut(s)	1190
BfuI	GTATCC	1 cut(s)	630
BglII	AGATCT	1 cut(s)	773
BisI	GCNGC	6 cut(s)	366, 647, 663, 666, 669, 1217
BlpI	GCTNAGC	1 cut(s)	1202
BlsI	GCNGC	6 cut(s)	367, 648, 664, 667, 670, 1218
Bme1390I	CCNGG	3 cut(s)	507, 983, 1041
Bme18I	GGWCC	3 cut(s)	979, 1021, 1037
BmgT120I	GGNCC	3 cut(s)	979, 1021, 1037
BmiI	GGNNCC	3 cut(s)	6, 223, 408
BmrFI	CCNGG	3 cut(s)	507, 983, 1041
BmsI	GCATC	4 cut(s)	567, 826, 848, 956
BplI	GAGNNNNNCTC	4 cut(s)	1203, 1235, 1205, 1237
BpmI	CTGGAG	2 cut(s)	219, 489
Bpu1102I	GCTNAGC	1 cut(s)	1202
BpuEI	CTTGAG	2 cut(s)	161, 197
Bsa29I	ATCGAT	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	1034
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	443, 982
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	1171
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	6 cut(s)	160, 202, 228, 518, 623, 957
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	507, 983, 1041
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	443, 982
BseGI	GGATG	5 cut(s)	76, 286, 568, 589, 738
BseLI	CCNNNNNNNGG	1 cut(s)	1171
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	205, 855, 896
BseNI	ACTGG	6 cut(s)	160, 202, 228, 518, 623, 957
BseRI	GAGGAG	3 cut(s)	399, 612, 930
BseXI	GCAGC	5 cut(s)	352, 633, 652, 674, 680
BsgI	GTGCAG	1 cut(s)	681
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	1171
BsmAI	GTCTC	2 cut(s)	194, 518
BsmBI	CGTCTC	1 cut(s)	518
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	303, 773, 1185
Bsp1720I	GCTNAGC	1 cut(s)	1202
BspACI	CCGC	1 cut(s)	1217
BspCNI	CTCAG	4 cut(s)	4, 204, 856, 895
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	3 cut(s)	6, 223, 408
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	2 cut(s)	298, 1180
BspTI	CTTAAG	1 cut(s)	1190
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	1219
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	6 cut(s)	160, 202, 228, 518, 623, 957
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	443, 982
BssMI	GATC	3 cut(s)	303, 773, 1185
BssNAI	GTATAC	1 cut(s)	938
Bst1107I	GTATAC	1 cut(s)	938
Bst2UI	CCWGG	3 cut(s)	507, 983, 1041
Bst4CI	ACNGT	2 cut(s)	326, 942
Bst6I	CTCTTC	1 cut(s)	731
BstAFI	CTTAAG	1 cut(s)	1190
BstAPI	GCANNNNNTGC	1 cut(s)	1136
BstBAI	YACGTR	1 cut(s)	1034
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	6 cut(s)	12, 191, 864, 882, 896, 1202
BstF5I	GGATG	5 cut(s)	76, 286, 568, 589, 738
BstH2I	RGCGCY	1 cut(s)	1161
BstHHI	GCGC	1 cut(s)	1160
BstKTI	GATC	3 cut(s)	306, 776, 1188
BstMAI	GTCTC	2 cut(s)	194, 518
BstMBI	GATC	3 cut(s)	303, 773, 1185
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 428, 668, 1136
BstNI	CCWGG	3 cut(s)	507, 983, 1041
BstSCI	CCNGG	3 cut(s)	505, 981, 1039
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	5 cut(s)	352, 633, 652, 674, 680
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BstZ17I	GTATAC	1 cut(s)	938
Bsu15I	ATCGAT	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	630
BsuTUI	ATCGAT	1 cut(s)	209
BtsCI	GGATG	5 cut(s)	76, 286, 568, 589, 738
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	1160
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	3 cut(s)	979, 1021, 1037
ClaI	ATCGAT	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	1039
CviAII	CATG	7 cut(s)	147, 413, 424, 725, 1018, 1166, 1207
DdeI	CTNAG	6 cut(s)	12, 191, 864, 882, 896, 1202
DpnI	GATC	3 cut(s)	305, 775, 1187
DpnII	GATC	3 cut(s)	303, 773, 1185
Eam1104I	CTCTTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	731
Eco31I	GGTCTC	1 cut(s)	194
Eco32I	GATATC	2 cut(s)	207, 237
Eco47I	GGWCC	3 cut(s)	979, 1021, 1037
EcoO109I	RGGNCCY	1 cut(s)	979
EcoRII	CCWGG	3 cut(s)	505, 981, 1039
EcoRV	GATATC	2 cut(s)	207, 237
EcoT22I	ATGCAT	1 cut(s)	841
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	7 cut(s)	150, 416, 427, 728, 1021, 1169, 1210
FalI	AAGNNNNNCTT	2 cut(s)	1119, 1151
FatI	CATG	7 cut(s)	146, 412, 423, 724, 1017, 1165, 1206
FauNDI	CATATG	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	937
Fnu4HI	GCNGC	6 cut(s)	366, 647, 663, 666, 669, 1217
FokI	GGATG	5 cut(s)	83, 293, 575, 596, 745
Fsp4HI	GCNGC	6 cut(s)	366, 647, 663, 666, 669, 1217
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	1159
GluI	GCNGC	6 cut(s)	366, 647, 663, 666, 669, 1217
GsuI	CTGGAG	2 cut(s)	219, 489
HaeII	RGCGCY	1 cut(s)	1161
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	1160
Hin1II	CATG	7 cut(s)	150, 416, 427, 728, 1021, 1169, 1210
Hin6I	GCGC	1 cut(s)	1158
HinP1I	GCGC	1 cut(s)	1158
HinfI	GANTC	1 cut(s)	606
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	938, 1037
Hpy188I	TCNGA	7 cut(s)	241, 376, 640, 691, 773, 997, 1146
Hpy188III	TCNNGA	9 cut(s)	140, 176, 193, 307, 354, 833, 1068, 1079, 1183
Hpy8I	GTNNAC	2 cut(s)	938, 1037
HpyAV	CCTTC	5 cut(s)	96, 533, 723, 970, 1034
HpyCH4III	ACNGT	2 cut(s)	326, 942
HpyCH4IV	ACGT	2 cut(s)	527, 1033
HpyCH4V	TGCA	8 cut(s)	23, 260, 272, 662, 668, 724, 839, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 428, 668, 1136
HpyF3I	CTNAG	6 cut(s)	12, 191, 864, 882, 896, 1202
HpySE526I	ACGT	2 cut(s)	527, 1033
Hsp92II	CATG	7 cut(s)	150, 416, 427, 728, 1021, 1169, 1210
HspAI	GCGC	1 cut(s)	1158
Kzo9I	GATC	3 cut(s)	303, 773, 1185
LmnI	GCTCC	2 cut(s)	412, 1174
Lsp1109I	GCAGC	5 cut(s)	352, 633, 652, 674, 680
LweI	GCATC	4 cut(s)	567, 826, 848, 956
MabI	ACCWGGT	1 cut(s)	1039
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	527, 1033
MaeIII	GTNAC	4 cut(s)	379, 885, 1043, 1232
MalI	GATC	3 cut(s)	305, 775, 1187
MbiI	CCGCTC	1 cut(s)	1219
MboI	GATC	3 cut(s)	303, 773, 1185
MboII	GAAGA	6 cut(s)	522, 748, 942, 945, 1019, 1067
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	5 cut(s)	90, 135, 349, 370, 1178
MlyI	GAGTC	1 cut(s)	615
MmeI	TCCRAC	2 cut(s)	32, 889
Mph1103I	ATGCAT	1 cut(s)	841
MseI	TTAA	5 cut(s)	44, 153, 321, 590, 1191
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	646, 665
MspCI	CTTAAG	1 cut(s)	1190
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	507, 983, 1041
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	3 cut(s)	507, 983, 1041
MwoI	GCNNNNNNNGC	4 cut(s)	37, 428, 668, 1136
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	3 cut(s)	303, 773, 1185
NlaIII	CATG	7 cut(s)	150, 416, 427, 728, 1021, 1169, 1210
NlaIV	GGNNCC	3 cut(s)	6, 223, 408
NmuCI	GTSAC	2 cut(s)	379, 1232
NsiI	ATGCAT	1 cut(s)	841
PcsI	WCGNNNNNNNCGW	1 cut(s)	910
PflMI	CCANNNNNTGG	1 cut(s)	1171
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	6 cut(s)	367, 648, 664, 667, 670, 1218
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
Ppu21I	YACGTR	1 cut(s)	1034
PpuMI	RGGWCCY	1 cut(s)	979
PshBI	ATTAAT	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	979
Psp6I	CCWGG	3 cut(s)	505, 981, 1039
PspGI	CCWGG	3 cut(s)	505, 981, 1039
PspN4I	GGNNCC	3 cut(s)	6, 223, 408
PspPI	GGNCC	3 cut(s)	979, 1021, 1037
PspPPI	RGGWCCY	1 cut(s)	979
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	773
PvuII	CAGCTG	2 cut(s)	646, 665
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	5 cut(s)	44, 153, 321, 590, 1191
SatI	GCNGC	6 cut(s)	366, 647, 663, 666, 669, 1217
Sau3AI	GATC	3 cut(s)	303, 773, 1185
Sau96I	GGNCC	3 cut(s)	979, 1021, 1037
SchI	GAGTC	1 cut(s)	615
ScrFI	CCNGG	3 cut(s)	507, 983, 1041
SduI	GDGCHC	1 cut(s)	42
SexAI	ACCWGGT	1 cut(s)	1039
SfaNI	GCATC	4 cut(s)	567, 826, 848, 956
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	3 cut(s)	979, 1021, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	3 cut(s)	140, 176, 1190
SmoI	CTYRAG	3 cut(s)	140, 176, 1190
Sse9I	AATT	5 cut(s)	90, 135, 349, 370, 1178
SsiI	CCGC	1 cut(s)	1217
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	505, 981, 1039
TaaI	ACNGT	2 cut(s)	326, 942
TaiI	ACGT	2 cut(s)	530, 1036
TaqI	TCGA	1 cut(s)	209
TasI	AATT	5 cut(s)	90, 135, 349, 370, 1178
TauI	GCSGC	1 cut(s)	1219
Tru1I	TTAA	5 cut(s)	44, 153, 321, 590, 1191
Tru9I	TTAA	5 cut(s)	44, 153, 321, 590, 1191
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	379, 1232
TseI	GCWGC	5 cut(s)	365, 646, 662, 665, 668
Tsp45I	GTSAC	2 cut(s)	379, 1232
TspDTI	ATGAA	5 cut(s)	297, 520, 749, 768, 872
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	279
Van91I	CCANNNNNTGG	1 cut(s)	1171
Vha464I	CTTAAG	1 cut(s)	1190
VpaK11BI	GGWCC	3 cut(s)	979, 1021, 1037
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	349
XbaI	TCTAGA	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	937
XspI	CTAG	1 cut(s)	354
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.