Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004962

Physical Location & Seq

Genomic Coordinates Forward (+)

4354461 .. 4357498

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1060900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAAGGATCGCGATCGCGAACCCCTTTACTTCCTTCTGATCTTCCAGAATCCACCTCCTCTAATAATACTGGAAGCGCTCGTGGGCTGTCTGGTATTCAGGGACTGAAGAAGAGAGGTCATGGAAGTCGTTCTTGGATAAAGATTGATCTGCATGGGAATATAAGCATTTTGGAGCTTGACAAAGCTACTATAATGAGACATTGTTCGTTGCCTGGCAGAGATCTCCGACTTTTGGATCCTTTGTTCATTCACCCTTCTACAATACTAGGAAGGGAGAAAGCTATTGTTGTTAGTCTTGAACAGATCAGGTGTATAATCACTGCTGACGATGTTATCCTGATGAATTCCCTGGATGAAAGTGTTGCTCAGTACAAGTTTGAATTGTGCAAACGCCTAGAGTCAAACGAAGATCAATCTGATGACTTGCCTTTCGAGTTCAGAGCATTGGAGCTGGCTTTGGAGCTAACCTGCATGTCTCTAGATGCTCAGGCACAGCAACTGCAAATGGAGATATACCCTGTGCTGGATGAACTAGCATCATCGATAAACACTGTTAATCTGGAGCGTGTGCGTAGACTCAAAGGTCACCTCCTTGCATTGACTCAACGAGTTCAGAAGGTCCGTGACGAAATAGAACATCTCATGGATGATGACGGTGATATGGCTGAGATGTACCTTACTGAGAAGAAACAACGGTCAGAGGGTTATCCCTCTAGTGACCTTGGTTTTCAAACTAACACATCACGCGAGGAAACAATTGTTTCAAAATCTGCTCCTGTTTCTCCAGTGGGGTCATTCAGTGGAACACATAAATTGCAAAGGGCTTTTACCAGTTTTGTGAGTTCAAGCAGGCAGGGAAGCTTATTGAGTTCGTCTAATGGCGGAGAAAACATTGATAAACTGGAAATGCTGCTTGAAGCATACTTTGTTGTCATCGACCATACTCTCAGCAAGTTGTTATCGCTGAAAGAATACATAGATGATACCGAAGACTTGATTAACATTAAACTGGGCAATGTTCAGAACCAACTGATACAGTATCAGTTGCTTCTTACAGCGGCTACCTTCTTGGCTACTGCTTTTGCCGCTGTTACAGCAGTGTTTGGAATGAATTTTGCCGCCACTGTTTTCGATCATCCATCTACATTCAATTGGGTTCTGGTTATTAGCAGTGTTGCCTGTGGGTTCCTGTACTTCTCTTTTCTGATGTATTTTAGGTACAAAAGGATCTTCCCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

415

Amino Acids

46.35

Weight (kDa)

5.39

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	51 - 244	1.6e-32	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03620 AT2G03620
fragaria_vesca	FvH4_4g30000 FvH4_4g30000
malus_domestica	MD13G1062600.v1.1 MD16G1060900.v1.1
prunus_persica	Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1
pyrus_communis	pycom13g05500 pycom16g05310
rosa_chinensis	RchiOBHm_Chr4g0438281
rosa_laevigata	RLG00000006374
rosa_multiflora	Rmu_sc0011129.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379370
rosa_rugosa	Rorug04G0308500 Rorug04G0308500 Rorug04G0308600 Rorug04G0308700
rosa_samantha	Rh4AG359700 Rh4BG370700 Rh4CG384800 Rh4DG365500
rosa_wichuraiana	Rw0G006430 Rw0G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	585
Acc36I	ACCTGC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	577
AccII	CGCG	3 cut(s)	13, 19, 750
AciI	CCGC	4 cut(s)	885, 1061, 1089, 1122
AclWI	GGATC	4 cut(s)	16, 233, 246, 1238
AcsI	RAATTY	2 cut(s)	346, 1114
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	4 cut(s)	374, 677, 1196, 1223
AfeI	AGCGCT	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	235, 526
AgsI	TTSAA	7 cut(s)	302, 383, 734, 768, 849, 920, 1153
AjnI	CCWGG	2 cut(s)	214, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	6 cut(s)	178, 188, 284, 454, 466, 864
AluI	AGCT	6 cut(s)	178, 188, 284, 454, 466, 864
Alw26I	GTCTC	2 cut(s)	193, 483
AlwI	GGATC	4 cut(s)	16, 233, 246, 1238
AlwNI	CAGNNNCTG	2 cut(s)	106, 502
Aor51HI	AGCGCT	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	913
ApoI	RAATTY	2 cut(s)	346, 1114
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AsiSI	GCGATCGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	3 cut(s)	245, 581, 671
AvaII	GGWCC	1 cut(s)	622
BamHI	GGATCC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	1 cut(s)	900
BccI	CCATC	1 cut(s)	1150
BciT130I	CCWGG	2 cut(s)	216, 353
BcoDI	GTCTC	2 cut(s)	193, 483
BfaI	CTAG	5 cut(s)	269, 398, 482, 536, 717
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
BlsI	GCNGC	4 cut(s)	915, 1063, 1090, 1123
Bme1390I	CCNGG	2 cut(s)	216, 353
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	240, 1190
BmrFI	CCNGG	2 cut(s)	216, 353
BmrI	ACTGGG	1 cut(s)	1022
BmsI	GCATC	2 cut(s)	475, 548
BmuI	ACTGGG	1 cut(s)	1022
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	2 cut(s)	584, 771
Bpu10I	CCTNAGC	1 cut(s)	489
Bsa29I	ATCGAT	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	351, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 526
Bse1I	ACTGG	5 cut(s)	76, 788, 834, 909, 1017
Bse3DI	GCAATG	1 cut(s)	1024
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	216, 353
BseCI	ATCGAT	1 cut(s)	545
BseDI	CCNNGG	2 cut(s)	351, 724
BseGI	GGATG	4 cut(s)	361, 535, 655, 1138
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	235, 526
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	5 cut(s)	383, 503, 660, 675, 964
BseNI	ACTGG	5 cut(s)	76, 788, 834, 909, 1017
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	900
Bsh1236I	CGCG	3 cut(s)	13, 19, 750
Bsh1285I	CGRYCG	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	235, 526
BsmAI	GTCTC	2 cut(s)	193, 483
BsmFI	GGGAC	1 cut(s)	117
Bsp68I	TCGCGA	2 cut(s)	13, 19
BspACI	CCGC	4 cut(s)	885, 1061, 1089, 1122
BspCNI	CTCAG	5 cut(s)	382, 502, 661, 676, 963
BspDI	ATCGAT	1 cut(s)	545
BspFNI	CGCG	3 cut(s)	13, 19, 750
BspLI	GGNNCC	2 cut(s)	240, 1190
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	4 cut(s)	16, 233, 246, 1238
BsrDI	GCAATG	1 cut(s)	1024
BsrI	ACTGG	5 cut(s)	76, 788, 834, 909, 1017
BssECI	CCNNGG	2 cut(s)	351, 724
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	724
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	216, 353
Bst4CI	ACNGT	5 cut(s)	556, 659, 699, 1041, 1129
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	456, 854
BstDEI	CTNAG	5 cut(s)	369, 489, 669, 684, 950
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	4 cut(s)	361, 535, 655, 1138
BstFNI	CGCG	3 cut(s)	13, 19, 750
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	2 cut(s)	193, 483
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	1088, 1097
BstNI	CCWGG	2 cut(s)	216, 353
BstNSI	RCATGY	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	214, 351
BstUI	CGCG	3 cut(s)	13, 19, 750
BstV1I	GCAGC	1 cut(s)	900
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	3 cut(s)	223, 238, 1230
BstYI	RGATCY	3 cut(s)	223, 238, 1230
Bsu15I	ATCGAT	1 cut(s)	545
BsuTUI	ATCGAT	1 cut(s)	545
BtsCI	GGATG	4 cut(s)	361, 535, 655, 1138
BtsI	GCAGTG	3 cut(s)	321, 1107, 1180
BtsIMutI	CAGTG	7 cut(s)	321, 552, 795, 808, 1107, 1125, 1180
BtuMI	TCGCGA	2 cut(s)	13, 19
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	456, 854
CaiI	CAGNNNCTG	2 cut(s)	106, 502
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	622
ClaI	ATCGAT	1 cut(s)	545
Csp6I	GTAC	4 cut(s)	373, 676, 1195, 1222
CviAII	CATG	4 cut(s)	122, 155, 475, 646
CviQI	GTAC	4 cut(s)	373, 676, 1195, 1222
DdeI	CTNAG	5 cut(s)	369, 489, 669, 684, 950
DrdI	GACNNNNNNGTC	1 cut(s)	585
DseDI	GACNNNNNNGTC	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	900
Eco130I	CCWWGG	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	622
Eco47III	AGCGCT	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	214, 351
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	4 cut(s)	125, 158, 478, 649
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	4 cut(s)	121, 154, 474, 645
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
FokI	GGATG	4 cut(s)	368, 542, 662, 1125
Fsp4HI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
FspBI	CTAG	5 cut(s)	269, 398, 482, 536, 717
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
GsuI	CTGGAG	2 cut(s)	584, 771
HaeII	RGCGCY	1 cut(s)	81
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	125, 158, 478, 649
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	862
HinfI	GANTC	4 cut(s)	50, 401, 579, 604
HphI	GGTGA	3 cut(s)	245, 581, 671
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	8 cut(s)	40, 230, 421, 443, 618, 703, 1026, 1209
Hpy188III	TCNNGA	7 cut(s)	12, 18, 47, 299, 340, 482, 563
Hpy8I	GTNNAC	1 cut(s)	578
HpyAV	CCTTC	5 cut(s)	45, 267, 267, 613, 1078
HpyCH4III	ACNGT	5 cut(s)	556, 659, 699, 1041, 1129
HpyCH4V	TGCA	6 cut(s)	154, 390, 474, 505, 599, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1088, 1097
HpyF3I	CTNAG	5 cut(s)	369, 489, 669, 684, 950
Hsp92II	CATG	4 cut(s)	125, 158, 478, 649
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	5 cut(s)	175, 451, 463, 565, 781
Lsp1109I	GCAGC	1 cut(s)	900
LweI	GCATC	2 cut(s)	475, 548
MaeI	CTAG	5 cut(s)	269, 398, 482, 536, 717
MaeIII	GTNAC	4 cut(s)	587, 626, 719, 1093
MboII	GAAGA	7 cut(s)	35, 121, 124, 422, 700, 1004, 1225
MfeI	CAATTG	2 cut(s)	759, 1153
MflI	RGATCY	3 cut(s)	223, 238, 1230
MluCI	AATT	6 cut(s)	346, 383, 759, 815, 1114, 1153
MlyI	GAGTC	3 cut(s)	410, 573, 598
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	67, 70, 110, 602, 697, 724, 745
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	3 cut(s)	558, 1002, 1008
MspA1I	CMGCKG	2 cut(s)	1061, 1091
MspR9I	CCNGG	2 cut(s)	216, 353
MunI	CAATTG	2 cut(s)	759, 1153
MvaI	CCWGG	2 cut(s)	216, 353
MvnI	CGCG	3 cut(s)	13, 19, 750
MwoI	GCNNNNNNNGC	2 cut(s)	1088, 1097
NlaIII	CATG	4 cut(s)	125, 158, 478, 649
NlaIV	GGNNCC	2 cut(s)	240, 1190
NmuCI	GTSAC	3 cut(s)	587, 626, 719
NruI	TCGCGA	2 cut(s)	13, 19
NspI	RCATGY	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	915, 1063, 1090, 1123
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	3 cut(s)	409, 573, 598
PpsI	GAGTC	3 cut(s)	409, 573, 598
Psp6I	CCWGG	2 cut(s)	214, 351
PspEI	GGTNACC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	214, 351
PspN4I	GGNNCC	2 cut(s)	240, 1190
PspPI	GGNCC	1 cut(s)	622
PstNI	CAGNNNCTG	2 cut(s)	106, 502
PsuI	RGATCY	3 cut(s)	223, 238, 1230
PvuI	CGATCG	1 cut(s)	17
RgaI	GCGATCGC	1 cut(s)	17
RruI	TCGCGA	2 cut(s)	13, 19
RsaI	GTAC	4 cut(s)	374, 677, 1196, 1223
RsaNI	GTAC	4 cut(s)	373, 676, 1195, 1222
SaqAI	TTAA	3 cut(s)	558, 1002, 1008
SatI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	3 cut(s)	410, 573, 598
ScrFI	CCNGG	2 cut(s)	216, 353
SfaAI	GCGATCGC	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	475, 548
SgfI	GCGATCGC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	622
Sse9I	AATT	6 cut(s)	346, 383, 759, 815, 1114, 1153
SsiI	CCGC	4 cut(s)	885, 1061, 1089, 1122
SspMI	CTAG	5 cut(s)	269, 398, 482, 536, 717
StyD4I	CCNGG	2 cut(s)	214, 351
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	5 cut(s)	556, 659, 699, 1041, 1129
TaqI	TCGA	4 cut(s)	435, 545, 939, 1134
TasI	AATT	6 cut(s)	346, 383, 759, 815, 1114, 1153
TatI	WGTACW	2 cut(s)	372, 1194
TauI	GCSGC	3 cut(s)	1064, 1091, 1124
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	3 cut(s)	558, 1002, 1008
Tru9I	TTAA	3 cut(s)	558, 1002, 1008
TscAI	CASTG	7 cut(s)	328, 559, 795, 808, 1107, 1132, 1180
TseFI	GTSAC	3 cut(s)	587, 626, 719
TseI	GCWGC	1 cut(s)	913
Tsp45I	GTSAC	3 cut(s)	587, 626, 719
TspDTI	ATGAA	5 cut(s)	238, 359, 372, 546, 1127
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	7 cut(s)	328, 559, 795, 808, 1107, 1132, 1180
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	2 cut(s)	346, 1114
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	5 cut(s)	269, 398, 482, 536, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.