Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004962

Physical Location & Seq

Genomic Coordinates Forward (+)

3449949 .. 3452009

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAAGGATCGCGATCGCGAACCCCTTTACTTCCTTCTGATCTTCCAGAATCCACCTCCTTTAATAATACTGGAAGCGCTCGTGGGCTGTCTGGTATTCAGGGACTGAAGAAGAGAGGTCACGGAAGTCGTTCTTGGATAAAGATTGATCTGCTTGGGAATATAAGCATTTTGGAGCTTGACAAGGCTACTATAATGAGACGTTGTTCGTTGCCTGGCAGAGATCTCCGACTTTTGGATCCTTTGTTCATTTACCCTTCTACAATATTAGGAAGGGAGAAAGCTATTGTTGTTAGTTTTGAACAGATCAGGTGTATAATCACTGCTGACGAGGTTATCCTGATGAATTCCCTGGTTGAAAGTGTTGTTCAGTACAAGTCTGAATTGTGCAAACGCCTAGAGTCAAACAAAGATCAATCTGATAACTTGCCTTTCGAGTTTAGAGCATTGGAGCTGGCTTTGGAACTAACCTGCATGTCTCTAGATGCTCAGGCACAGGAACTGCAAAAGGAGATATACCCTTTGCTGGATGAACTAGCATCATCAATAAACACTGTTAATCTGGAGCGTGTGCGTAGACTCAAAGGTCACCTCCTTGCATTGACTCAACGAGTTCAGAAGGTCCGTGATGAAATAGAAAATCTCATGGATGATGACGGTGATATGGCTGAGATGTACCTTACTGAGAAGAAACTACAGTCAGAGGGTTATCCCTCTAGTGACCTTGGTTTTCAAACTAACACATCATGCGAGGAAACAATTGTTTCAAAATCTGCTCCTGTTTCTCCTGTGGGGTCATTCAGTGGAACACATAAATTGCAAAGGGCTTTTACCAGTATTGTGAGTTCAAGCAGGCAGGGAAGCTTATTGAGTTCGTCTAATTGCGGAGAAAACATTGATAAACTGGAAATGCTGCTTGAAGCATACTTTGTTGTCATCGACCATACTCTCAGCAAGTTGTTATCGCTGAAAGAATACATAGATGATACCGAAGACTTGATTAACATTAAACTGAGCAATGTTCAGAACCATCTGATACAGTATCAGTTGCTTCTTACAGCGGCTACCTTCTTGGCTACTATTTTTGCCGCTGTTACAGCAGTGTTTGGAATGAATTTTGCCGCCACTGTTTTCGATCACCCACCTACATTCAATTGGGTTCTGGTTATTAGCGGTGTTGCCTGTGGGTTCACGTACTTCGCTTTTCTTATGTATTTTAGGTACAAAAGGATCTTCCCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

415

Amino Acids

46.37

Weight (kDa)

5.45

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03620 AT2G03620
fragaria_vesca	FvH4_4g30000 FvH4_4g30000
malus_domestica	MD13G1062600.v1.1 MD16G1060900.v1.1
prunus_persica	Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1
pyrus_communis	pycom13g05500 pycom16g05310
rosa_chinensis	RchiOBHm_Chr4g0438281
rosa_laevigata	RLG00000006374
rosa_multiflora	Rmu_sc0011129.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379370
rosa_rugosa	Rorug04G0308500 Rorug04G0308500 Rorug04G0308600 Rorug04G0308700
rosa_samantha	Rh4AG359700 Rh4BG370700 Rh4CG384800 Rh4DG365500
rosa_wichuraiana	Rw0G006430 Rw0G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	585
Acc36I	ACCTGC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	577
AccII	CGCG	2 cut(s)	13, 19
AciI	CCGC	5 cut(s)	885, 1061, 1089, 1122, 1173
AclWI	GGATC	4 cut(s)	16, 233, 246, 1238
AcsI	RAATTY	2 cut(s)	346, 1114
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	4 cut(s)	374, 677, 1196, 1223
AfeI	AGCGCT	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	235, 526
AgsI	TTSAA	7 cut(s)	302, 359, 734, 768, 849, 920, 1153
AjnI	CCWGG	2 cut(s)	214, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	4 cut(s)	178, 284, 454, 864
AluI	AGCT	4 cut(s)	178, 284, 454, 864
Alw26I	GTCTC	2 cut(s)	193, 483
AlwI	GGATC	4 cut(s)	16, 233, 246, 1238
AlwNI	CAGNNNCTG	2 cut(s)	106, 502
Aor51HI	AGCGCT	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	913
ApoI	RAATTY	2 cut(s)	346, 1114
AsiSI	GCGATCGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	3 cut(s)	581, 671, 1130
AvaII	GGWCC	1 cut(s)	622
BamHI	GGATCC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	1 cut(s)	900
BccI	CCATC	1 cut(s)	1038
BciT130I	CCWGG	2 cut(s)	216, 353
BcoDI	GTCTC	2 cut(s)	193, 483
BfaI	CTAG	4 cut(s)	398, 482, 536, 717
BfmI	CTRYAG	1 cut(s)	695
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
BlsI	GCNGC	4 cut(s)	915, 1063, 1090, 1123
Bme1390I	CCNGG	2 cut(s)	216, 353
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	216, 353
BmsI	GCATC	2 cut(s)	475, 548
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	1194
BsaBI	GATNNNNATC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	351, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 526
Bse1I	ACTGG	3 cut(s)	76, 834, 909
Bse3DI	GCAATG	1 cut(s)	1024
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	216, 353
BseDI	CCNNGG	2 cut(s)	351, 724
BseGI	GGATG	2 cut(s)	535, 655
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	235, 526
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	5 cut(s)	503, 660, 675, 964, 1004
BseNI	ACTGG	3 cut(s)	76, 834, 909
BseXI	GCAGC	1 cut(s)	900
Bsh1236I	CGCG	2 cut(s)	13, 19
Bsh1285I	CGRYCG	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	235, 526
BsmAI	GTCTC	2 cut(s)	193, 483
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	117
Bsp68I	TCGCGA	2 cut(s)	13, 19
BspACI	CCGC	5 cut(s)	885, 1061, 1089, 1122, 1173
BspCNI	CTCAG	5 cut(s)	502, 661, 676, 963, 1005
BspFNI	CGCG	2 cut(s)	13, 19
BspLI	GGNNCC	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	4 cut(s)	16, 233, 246, 1238
BsrDI	GCAATG	1 cut(s)	1024
BsrI	ACTGG	3 cut(s)	76, 834, 909
BssECI	CCNNGG	2 cut(s)	351, 724
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	724
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	216, 353
Bst4CI	ACNGT	5 cut(s)	556, 659, 699, 1041, 1129
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	1194
BstC8I	GCNNGC	2 cut(s)	456, 854
BstDEI	CTNAG	5 cut(s)	489, 669, 684, 950, 1013
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	535, 655
BstFNI	CGCG	2 cut(s)	13, 19
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	2 cut(s)	193, 483
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	1097
BstNI	CCWGG	2 cut(s)	216, 353
BstNSI	RCATGY	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	214, 351
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	2 cut(s)	13, 19
BstV1I	GCAGC	1 cut(s)	900
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	3 cut(s)	223, 238, 1230
BstYI	RGATCY	3 cut(s)	223, 238, 1230
BtsCI	GGATG	2 cut(s)	535, 655
BtsI	GCAGTG	2 cut(s)	321, 1107
BtsIMutI	CAGTG	5 cut(s)	321, 552, 808, 1107, 1125
BtuMI	TCGCGA	2 cut(s)	13, 19
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	456, 854
CaiI	CAGNNNCTG	2 cut(s)	106, 502
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	4 cut(s)	373, 676, 1195, 1222
CviAII	CATG	3 cut(s)	475, 646, 747
CviQI	GTAC	4 cut(s)	373, 676, 1195, 1222
DdeI	CTNAG	5 cut(s)	489, 669, 684, 950, 1013
DrdI	GACNNNNNNGTC	1 cut(s)	585
DseDI	GACNNNNNNGTC	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	622
Eco47III	AGCGCT	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	214, 351
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	478, 649, 750
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	474, 645, 746
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
FokI	GGATG	2 cut(s)	542, 662
Fsp4HI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
FspBI	CTAG	4 cut(s)	398, 482, 536, 717
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	81
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	478, 649, 750
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	862
HinfI	GANTC	4 cut(s)	50, 401, 579, 604
HphI	GGTGA	3 cut(s)	581, 671, 1130
Hpy166II	GTNNAC	2 cut(s)	578, 1191
Hpy188I	TCNGA	8 cut(s)	40, 230, 382, 421, 618, 703, 1026, 1035
Hpy188III	TCNNGA	6 cut(s)	12, 18, 47, 340, 482, 563
Hpy8I	GTNNAC	2 cut(s)	578, 1191
HpyAV	CCTTC	5 cut(s)	45, 267, 267, 613, 1078
HpyCH4III	ACNGT	5 cut(s)	556, 659, 699, 1041, 1129
HpyCH4IV	ACGT	2 cut(s)	202, 1193
HpyCH4V	TGCA	5 cut(s)	390, 474, 505, 599, 820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1097
HpyF3I	CTNAG	5 cut(s)	489, 669, 684, 950, 1013
HpySE526I	ACGT	2 cut(s)	202, 1193
Hsp92II	CATG	3 cut(s)	478, 649, 750
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	175, 451, 565, 781
Lsp1109I	GCAGC	1 cut(s)	900
LweI	GCATC	2 cut(s)	475, 548
MaeI	CTAG	4 cut(s)	398, 482, 536, 717
MaeII	ACGT	2 cut(s)	202, 1193
MaeIII	GTNAC	4 cut(s)	119, 587, 719, 1093
MboII	GAAGA	6 cut(s)	35, 121, 124, 700, 1004, 1225
MfeI	CAATTG	2 cut(s)	759, 1153
MflI	RGATCY	3 cut(s)	223, 238, 1230
MluCI	AATT	7 cut(s)	346, 383, 759, 815, 880, 1114, 1153
MlyI	GAGTC	3 cut(s)	410, 573, 598
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	67, 110, 325, 602, 697, 724, 745
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	4 cut(s)	63, 558, 1002, 1008
MspA1I	CMGCKG	2 cut(s)	1061, 1091
MspR9I	CCNGG	2 cut(s)	216, 353
MunI	CAATTG	2 cut(s)	759, 1153
MvaI	CCWGG	2 cut(s)	216, 353
MvnI	CGCG	2 cut(s)	13, 19
MwoI	GCNNNNNNNGC	1 cut(s)	1097
NlaIII	CATG	3 cut(s)	478, 649, 750
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	3 cut(s)	119, 587, 719
NruI	TCGCGA	2 cut(s)	13, 19
NspI	RCATGY	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	915, 1063, 1090, 1123
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	3 cut(s)	409, 573, 598
PpsI	GAGTC	3 cut(s)	409, 573, 598
Ppu21I	YACGTR	1 cut(s)	1194
Psp6I	CCWGG	2 cut(s)	214, 351
PspEI	GGTNACC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	214, 351
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	622
PsrI	GAACNNNNNNTAC	2 cut(s)	829, 861
PstNI	CAGNNNCTG	2 cut(s)	106, 502
PsuI	RGATCY	3 cut(s)	223, 238, 1230
PvuI	CGATCG	1 cut(s)	17
RgaI	GCGATCGC	1 cut(s)	17
RruI	TCGCGA	2 cut(s)	13, 19
RsaI	GTAC	4 cut(s)	374, 677, 1196, 1223
RsaNI	GTAC	4 cut(s)	373, 676, 1195, 1222
SaqAI	TTAA	4 cut(s)	63, 558, 1002, 1008
SatI	GCNGC	4 cut(s)	914, 1062, 1089, 1122
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	3 cut(s)	410, 573, 598
ScrFI	CCNGG	2 cut(s)	216, 353
SfaAI	GCGATCGC	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	475, 548
SfcI	CTRYAG	1 cut(s)	695
SgfI	GCGATCGC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	622
Sse9I	AATT	7 cut(s)	346, 383, 759, 815, 880, 1114, 1153
SsiI	CCGC	5 cut(s)	885, 1061, 1089, 1122, 1173
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	4 cut(s)	398, 482, 536, 717
StyD4I	CCNGG	2 cut(s)	214, 351
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	5 cut(s)	556, 659, 699, 1041, 1129
TaiI	ACGT	2 cut(s)	205, 1196
TaqI	TCGA	3 cut(s)	435, 939, 1134
TasI	AATT	7 cut(s)	346, 383, 759, 815, 880, 1114, 1153
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	3 cut(s)	1064, 1091, 1124
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	4 cut(s)	63, 558, 1002, 1008
Tru9I	TTAA	4 cut(s)	63, 558, 1002, 1008
TscAI	CASTG	5 cut(s)	328, 559, 808, 1107, 1132
TseFI	GTSAC	3 cut(s)	119, 587, 719
TseI	GCWGC	1 cut(s)	913
Tsp45I	GTSAC	3 cut(s)	119, 587, 719
TspDTI	ATGAA	5 cut(s)	238, 359, 546, 645, 1127
TspGWI	ACGGA	2 cut(s)	138, 614
TspRI	CASTG	5 cut(s)	328, 559, 808, 1107, 1132
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	2 cut(s)	346, 1114
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	4 cut(s)	398, 482, 536, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.