Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00245

Orthogroup ID

OG0004962

Physical Location & Seq

Genomic Coordinates Forward (+)

169051 .. 171488

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAAGGATCACGGAGTCCTTTAATTCATTCTGATCATCCAGAATCCACCTCCTCTAATAATACTGGAAACTTTCAGTTTTATGCAAATGGAATTCGTGAGTGTCCTGGTGGTATCCAGGGACTGGAGAAGAGAGGTCATGGAATTCGTGGTTGGCCTGGTGGTATCGAGGAACTGAAGAAGAGAGGTCATGGAAATCGATCTTGGATAAAGATTGATACAACTGGGGACTCAAAGATTTTGGAGCTTGACAAGGCTACTATTATGAGACATTGTTCTTTGCCTGCCAGAGATCTCCGACTTTTGGACCCTTTGTTCATTTACCCTTCTACAATTTTAGGAAGGGAGAAAGCTATTGTTGTTAGTCTAGAACAGATAAGGTGTATAATCACTGCTGAAGAGGTTATCCTTATGAATTCCCTGGATCGATGTGTTGTTCAGTACAAATCTGAATTATGCAAACGCCTTCAGGCAAACAAAGATCAATCTGATGACTTGCCCTTCGAATTTAGAGCACTGGAGCTGGCTTTGGAACTAACTTGCTTATCTCTAGATGCTCAGGTAAAAGAACTGGAACTGGAGATATACCCTGTGCTGGATGAACTAGCAACATCCATTAACACTCTGAATCTAGAGCGTGTGCGTAGACTCAAAGGTCACCTCCTTGCCTTGACACAACGAGTGCAGAAGGTCCGTGATGAAATAGAACATCTCATGGATGATGACGGCGACATGGCTGAGATGTACCTGACTGAGAAGAAACAAAGGTCGGAGTGTTTTCCCTCAGGTGACCTTAGCTTTCAAACTAACTCCTCGCGTGATGATAAAGTGGTTTCGAAATCTGCTCCTGTTTCACCAGTAGAGTCACTCGGTCGATCACAGAATTTGCAAAGGACTTTTAGCAGTATTGTGAATTCAAGCAGAACTGGAAGCTTCATTAGTTCATCTAATAGTGAAGAAGACGTTGATCAACTGGAAATGCTGCTTGAAGCATACTTTATTATCATTGACCATACTCTCAGCAAATTGTTATCGCTAAAAGAATACATTGATGATACTGAAGATTTTATTAACATCAAACTGGGCAATGTTCAGAACCATCTGATAAAATTTGAGTTGCTTCTTACAGCAGCTACCTTTGTGGCTACAATGTTTGCTTCTGTTACAGCAGTATTTGGAATGAATTTTGCAGACTCTGTTTTTGAAAATCCATCCACATTTAGTTGGGTTCTGATTATTTGTGGTTTCGTCTGTGGGTTCTTGTACTTCGCTTTCCTGATTTATTGTAGGCACAAAAGGATCTTTCCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

437

Amino Acids

49.39

Weight (kDa)

5.36

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	81 - 262	8.5e-31	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03620 AT2G03620
fragaria_vesca	FvH4_4g30000 FvH4_4g30000
malus_domestica	MD13G1062600.v1.1 MD16G1060900.v1.1
prunus_persica	Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1
pyrus_communis	pycom13g05500 pycom16g05310
rosa_chinensis	RchiOBHm_Chr4g0438281
rosa_laevigata	RLG00000006374
rosa_multiflora	Rmu_sc0011129.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379370
rosa_rugosa	Rorug04G0308500 Rorug04G0308500 Rorug04G0308600 Rorug04G0308700
rosa_samantha	Rh4AG359700 Rh4BG370700 Rh4CG384800 Rh4DG365500
rosa_wichuraiana	Rw0G006430 Rw0G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	646
AccII	CGCG	1 cut(s)	817
AclWI	GGATC	3 cut(s)	16, 432, 1307
AcsI	RAATTY	8 cut(s)	93, 144, 415, 506, 883, 913, 1109, 1183
AcuI	CTGAAG	4 cut(s)	197, 417, 452, 1080
AfaI	GTAC	3 cut(s)	443, 746, 1265
AfiI	CCNNNNNNNGG	3 cut(s)	124, 304, 595
AgsI	TTSAA	4 cut(s)	803, 918, 989, 1205
AjnI	CCWGG	4 cut(s)	106, 117, 157, 420
AjuI	GAANNNNNNNTTGG	4 cut(s)	136, 168, 187, 219
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	6 cut(s)	247, 353, 523, 798, 933, 1133
AluI	AGCT	6 cut(s)	247, 353, 523, 798, 933, 1133
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	3 cut(s)	16, 432, 1307
AlwNI	CAGNNNCTG	2 cut(s)	124, 1196
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	982, 1130
ApoI	RAATTY	8 cut(s)	93, 144, 415, 506, 883, 913, 1109, 1183
ArsI	GACNNNNNNTTYG	4 cut(s)	485, 517, 1184, 1216
AspS9I	GGNCC	2 cut(s)	307, 691
AsuHPI	GGTGA	3 cut(s)	650, 800, 846
AsuII	TTCGAA	2 cut(s)	504, 836
AvaII	GGWCC	2 cut(s)	307, 691
AxyI	CCTNAGG	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	2 cut(s)	969, 1142
BccI	CCATC	2 cut(s)	1107, 1219
BceAI	ACGGC	1 cut(s)	742
BciT130I	CCWGG	4 cut(s)	108, 119, 159, 422
BciVI	GTATCC	1 cut(s)	125
BclI	TGATCA	2 cut(s)	34, 967
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	4 cut(s)	368, 551, 605, 632
BfuI	GTATCC	1 cut(s)	125
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	2 cut(s)	983, 1131
BlsI	GCNGC	2 cut(s)	984, 1132
Bme1390I	CCNGG	4 cut(s)	108, 119, 159, 422
Bme18I	GGWCC	2 cut(s)	307, 691
BmgT120I	GGNCC	2 cut(s)	307, 691
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	4 cut(s)	108, 119, 159, 422
BmrI	ACTGGG	2 cut(s)	234, 1091
BmsI	GCATC	1 cut(s)	544
BmuI	ACTGGG	2 cut(s)	234, 1091
BpiI	GAAGAC	1 cut(s)	966
BpmI	CTGGAG	3 cut(s)	146, 539, 599
Bpu10I	CCTNAGC	2 cut(s)	558, 794
Bpu14I	TTCGAA	2 cut(s)	504, 836
Bsa29I	ATCGAT	2 cut(s)	199, 427
BsaJI	CCNNGG	2 cut(s)	118, 420
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 304, 595
Bse21I	CCTNAGG	1 cut(s)	784
Bse3DI	GCAATG	1 cut(s)	1093
BseBI	CCWGG	4 cut(s)	108, 119, 159, 422
BseCI	ATCGAT	2 cut(s)	199, 427
BseDI	CCNNGG	2 cut(s)	118, 420
BseGI	GGATG	5 cut(s)	37, 604, 611, 724, 1211
BseLI	CCNNNNNNNGG	3 cut(s)	124, 304, 595
BseMI	GCAATG	1 cut(s)	1093
BseMII	CTCAG	5 cut(s)	572, 729, 744, 798, 1033
BseRI	GAGGAG	2 cut(s)	43, 802
BseXI	GCAGC	2 cut(s)	969, 1142
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	817
Bsh1285I	CGRYCG	1 cut(s)	874
BshFI	GGCC	1 cut(s)	157
BshVI	ATCGAT	2 cut(s)	199, 427
BsiEI	CGRYCG	1 cut(s)	874
BsiHKAI	GWGCWC	1 cut(s)	517
BslFI	GGGAC	2 cut(s)	135, 242
BslI	CCNNNNNNNGG	3 cut(s)	124, 304, 595
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	135, 242
BsnI	GGCC	1 cut(s)	157
Bsp119I	TTCGAA	2 cut(s)	504, 836
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	5 cut(s)	571, 730, 745, 797, 1032
BspDI	ATCGAT	2 cut(s)	199, 427
BspFNI	CGCG	1 cut(s)	817
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	16, 432, 1307
BspT104I	TTCGAA	2 cut(s)	504, 836
BsrDI	GCAATG	1 cut(s)	1093
BssECI	CCNNGG	2 cut(s)	118, 420
BssMI	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
Bst2UI	CCWGG	4 cut(s)	108, 119, 159, 422
Bst6I	CTCTTC	3 cut(s)	125, 176, 393
BstBI	TTCGAA	2 cut(s)	504, 836
BstC8I	GCNNGC	2 cut(s)	285, 525
BstDEI	CTNAG	6 cut(s)	558, 738, 753, 784, 794, 1019
BstEII	GGTNACC	2 cut(s)	656, 788
BstF5I	GGATG	5 cut(s)	37, 604, 611, 724, 1211
BstFNI	CGCG	1 cut(s)	817
BstKTI	GATC	9 cut(s)	11, 37, 203, 295, 427, 484, 878, 970, 1302
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
BstMCI	CGRYCG	1 cut(s)	874
BstNI	CCWGG	4 cut(s)	108, 119, 159, 422
BstPI	GGTNACC	2 cut(s)	656, 788
BstSCI	CCNGG	4 cut(s)	106, 117, 157, 420
BstUI	CGCG	1 cut(s)	817
BstV1I	GCAGC	2 cut(s)	969, 1142
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	2 cut(s)	292, 1299
BstYI	RGATCY	2 cut(s)	292, 1299
Bsu15I	ATCGAT	2 cut(s)	199, 427
Bsu36I	CCTNAGG	1 cut(s)	784
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	157
BsuTUI	ATCGAT	2 cut(s)	199, 427
BtsCI	GGATG	5 cut(s)	37, 604, 611, 724, 1211
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 515
Cac8I	GCNNGC	2 cut(s)	285, 525
CaiI	CAGNNNCTG	2 cut(s)	124, 1196
Cfr13I	GGNCC	2 cut(s)	307, 691
ClaI	ATCGAT	2 cut(s)	199, 427
Csp6I	GTAC	3 cut(s)	442, 745, 1264
CviAII	CATG	4 cut(s)	140, 191, 715, 733
CviQI	GTAC	3 cut(s)	442, 745, 1264
DdeI	CTNAG	6 cut(s)	558, 738, 753, 784, 794, 1019
DpnI	GATC	9 cut(s)	10, 36, 202, 294, 426, 483, 877, 969, 1301
DpnII	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
Eam1104I	CTCTTC	3 cut(s)	125, 176, 393
EarI	CTCTTC	3 cut(s)	125, 176, 393
Eco47I	GGWCC	2 cut(s)	307, 691
Eco57I	CTGAAG	4 cut(s)	197, 417, 452, 1080
Eco81I	CCTNAGG	1 cut(s)	784
Eco91I	GGTNACC	2 cut(s)	656, 788
EcoO65I	GGTNACC	2 cut(s)	656, 788
EcoRI	GAATTC	4 cut(s)	93, 144, 415, 913
EcoRII	CCWGG	4 cut(s)	106, 117, 157, 420
FaeI	CATG	4 cut(s)	143, 194, 718, 736
FaqI	GGGAC	2 cut(s)	135, 242
FatI	CATG	4 cut(s)	139, 190, 714, 732
FbaI	TGATCA	2 cut(s)	34, 967
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	983, 1131
FokI	GGATG	5 cut(s)	24, 598, 611, 731, 1198
Fsp4HI	GCNGC	2 cut(s)	983, 1131
FspBI	CTAG	4 cut(s)	368, 551, 605, 632
GluI	GCNGC	2 cut(s)	983, 1131
GsuI	CTGGAG	3 cut(s)	146, 539, 599
HaeIII	GGCC	1 cut(s)	157
Hin1II	CATG	4 cut(s)	143, 194, 718, 736
HindIII	AAGCTT	1 cut(s)	931
HinfI	GANTC	7 cut(s)	16, 44, 230, 628, 648, 863, 1193
HphI	GGTGA	3 cut(s)	650, 800, 846
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	9 cut(s)	34, 299, 451, 490, 627, 772, 1095, 1104, 1233
Hpy188III	TCNNGA	6 cut(s)	41, 98, 368, 551, 632, 1276
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	5 cut(s)	336, 336, 476, 511, 682
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	5 cut(s)	86, 459, 685, 889, 1190
HpyF3I	CTNAG	6 cut(s)	558, 738, 753, 784, 794, 1019
HpySE526I	ACGT	1 cut(s)	963
Hsp92II	CATG	4 cut(s)	143, 194, 718, 736
Ksp22I	TGATCA	2 cut(s)	34, 967
Kzo9I	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
LmnI	GCTCC	3 cut(s)	244, 520, 850
Lsp1109I	GCAGC	2 cut(s)	969, 1142
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	4 cut(s)	368, 551, 605, 632
MaeII	ACGT	1 cut(s)	963
MaeIII	GTNAC	4 cut(s)	656, 788, 864, 1162
MalI	GATC	9 cut(s)	10, 36, 202, 294, 426, 483, 877, 969, 1301
MboI	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
MboII	GAAGA	8 cut(s)	142, 190, 193, 410, 769, 968, 971, 1073
MflI	RGATCY	2 cut(s)	292, 1299
MhlI	GDGCHC	1 cut(s)	517
MlyI	GAGTC	5 cut(s)	25, 224, 642, 872, 1187
MmeI	TCCRAC	2 cut(s)	322, 750
MnlI	CCTC	9 cut(s)	61, 64, 128, 163, 179, 394, 671, 793, 823
MseI	TTAA	3 cut(s)	23, 618, 1071
MspR9I	CCNGG	4 cut(s)	108, 119, 159, 422
MvaI	CCWGG	4 cut(s)	108, 119, 159, 422
MvnI	CGCG	1 cut(s)	817
NdeII	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
NlaIII	CATG	4 cut(s)	143, 194, 718, 736
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	656, 788, 864
NspV	TTCGAA	2 cut(s)	504, 836
PfeI	GAWTC	2 cut(s)	44, 628
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	984, 1132
PleI	GAGTC	5 cut(s)	24, 224, 642, 871, 1187
PpsI	GAGTC	5 cut(s)	24, 224, 642, 871, 1187
Psp6I	CCWGG	4 cut(s)	106, 117, 157, 420
PspEI	GGTNACC	2 cut(s)	656, 788
PspGI	CCWGG	4 cut(s)	106, 117, 157, 420
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	307, 691
PstNI	CAGNNNCTG	2 cut(s)	124, 1196
PsuI	RGATCY	2 cut(s)	292, 1299
RsaI	GTAC	3 cut(s)	443, 746, 1265
RsaNI	GTAC	3 cut(s)	442, 745, 1264
SaqAI	TTAA	3 cut(s)	23, 618, 1071
SatI	GCNGC	2 cut(s)	983, 1131
Sau3AI	GATC	9 cut(s)	8, 34, 200, 292, 424, 481, 875, 967, 1299
Sau96I	GGNCC	2 cut(s)	307, 691
SchI	GAGTC	5 cut(s)	25, 224, 642, 872, 1187
ScrFI	CCNGG	4 cut(s)	108, 119, 159, 422
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	544
SfuI	TTCGAA	2 cut(s)	504, 836
SinI	GGWCC	2 cut(s)	307, 691
SspMI	CTAG	4 cut(s)	368, 551, 605, 632
StyD4I	CCNGG	4 cut(s)	106, 117, 157, 420
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	6 cut(s)	168, 199, 427, 504, 836, 874
TaqII	GACCGA	1 cut(s)	860
TatI	WGTACW	2 cut(s)	441, 1263
TfiI	GAWTC	2 cut(s)	44, 628
Tru1I	TTAA	3 cut(s)	23, 618, 1071
Tru9I	TTAA	3 cut(s)	23, 618, 1071
TscAI	CASTG	2 cut(s)	397, 522
TseFI	GTSAC	3 cut(s)	656, 788, 864
TseI	GCWGC	2 cut(s)	982, 1130
Tsp45I	GTSAC	3 cut(s)	656, 788, 864
TspDTI	ATGAA	8 cut(s)	17, 307, 428, 615, 714, 925, 933, 1196
TspGWI	ACGGA	2 cut(s)	28, 683
TspRI	CASTG	2 cut(s)	397, 522
Van91I	CCANNNNNTGG	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	307, 691
XapI	RAATTY	8 cut(s)	93, 144, 415, 506, 883, 913, 1109, 1183
XbaI	TCTAGA	3 cut(s)	367, 550, 631
XmiI	GTMKAC	1 cut(s)	646
XspI	CTAG	4 cut(s)	368, 551, 605, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.