Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004962

Physical Location & Seq

Genomic Coordinates Reverse (-)

28736632 .. 28741103

Gene Structure 4472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G287300.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAAGGATCACGAACCCCTTTACTTCCGTCTGATCTTCCAGAATCGACCTCCTCTAATAATACTGGGAGTGCGAATTTTCATGCACATGGAATTCGTGGGTGGTCCGGTATTCAGGGACTGAAGAAGAGAGGTCATGGAAGTCGTTCATGGATACAGATTGATCCACTTGGGAACACAAGCGTTGTGGAGCTTGACAAGGCTACTATAATGAGACATTGTTCTTTGCCTGCCAGAGATCTCCGACTTTTGGATCCTTTGTTCATTTACCCTTCTACAATATTAGGAAGGGAGAAAGCTATTGTTGTTAGTCTTGAACAGATCAGGTGTATAATCACAGCTGATGAGGTTATCCTGATGAATTCTCTGGATGGATGTGTTGTTCAGTACAAGTCTGAATTGTGCAAACGCCTACAGTCAAACAAAGATCAATCTGATGACTTGCCTTTCGAGTTTAGAGCATTGGAGCTGGCTTTGGAACTAACCTGCTCGTCTCTAGATGCCCAGGTAAAAGAACTGGCAATGGAGATATACCCTGTGCTGGATGAACTAGCATTATCTATAAACACTCTTAATCTAGAGCGCGTGCGTAGACTCAAAGGGCACCTCCTTGCCGTGACGCAACGAGTTCAGAAGGTTCGTGATGAAATAGAACATCTCATGGATGATGACGGTGACATGGCCGAGATGTACCTAACTGAGAAGAAACAAAGGTCAGAGGGTTATCCCCTAAGTGACCTTGGTTTTCAAACTGACACCTCAAGTATGGAAAGAGTGGGCTCAAAATCTGCTCCTGTTTCTCCAGTGGGGTCAATCAGTGGAGCACAGAAATTGCAAAGGGCTTTTAGCAGTATTGTGAGTTCAAGCAGACCCAGCTTAATGAGTTCATCTAATAGTGGAGAAAACATTGAACAACTGGAAATGCTGCTTGAAGCATACTTTGTTGTCATTGACCATACTCTCAGCGAGGTGTTATCGCTAAAAGAATACATTGATGATACTGAAGATTTGATTAACTTTAAACTGGGCAATGTTCAGAACCATCTGATACAATTTGAGTTGCTTCTCACAGCAGCTACTTTCGTGGCCACAATTTTTGCTGCAGTTACAGCAGTTTTTGGAATGAATTTTCCCGATTCTATTTTTGATAATCCATCGACATTCAGCTGGGTTCTCATTATTTGTGGTGTTGCCTCTCCAAGTGCTGTCTCAAGCTCCATGATACGTGCTTCAAGCCTTGACTCGATCACCTCATGCAGACGCAAACTCAGCTCCCTAGGGCACACAGCTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

433

Amino Acids

47.53

Weight (kDa)

5.18

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03620 AT2G03620
fragaria_vesca	FvH4_4g30000 FvH4_4g30000
malus_domestica	MD13G1062600.v1.1 MD16G1060900.v1.1
prunus_persica	Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1 Prupe.1G287300_v2.0.a1
pyrus_communis	pycom13g05500 pycom16g05310
rosa_chinensis	RchiOBHm_Chr4g0438281
rosa_laevigata	RLG00000006374
rosa_multiflora	Rmu_sc0011129.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379370
rosa_rugosa	Rorug04G0308500 Rorug04G0308500 Rorug04G0308600 Rorug04G0308700
rosa_samantha	Rh4AG359700 Rh4BG370700 Rh4CG384800 Rh4DG365500
rosa_wichuraiana	Rw0G006430 Rw0G016370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	592
AccII	CGCG	1 cut(s)	585
AclWI	GGATC	4 cut(s)	16, 158, 248, 261
AcoI	YGGCCR	2 cut(s)	681, 1086
AcsI	RAATTY	4 cut(s)	76, 93, 361, 1126
AcuI	CTGAAG	2 cut(s)	143, 1023
AfaI	GTAC	2 cut(s)	389, 692
AfiI	CCNNNNNNNGG	2 cut(s)	250, 541
AgsI	TTSAA	6 cut(s)	317, 749, 864, 911, 932, 1233
AjnI	CCWGG	1 cut(s)	504
AloI	GAACNNNNNNTCC	4 cut(s)	245, 277, 366, 398
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	3 cut(s)	208, 498, 1213
AlwI	GGATC	4 cut(s)	16, 158, 248, 261
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	681, 1086
ApeKI	GCWGC	3 cut(s)	925, 1073, 1100
ApoI	RAATTY	4 cut(s)	76, 93, 361, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
Asp700I	GAANNNNTTC	1 cut(s)	145
AspA2I	CCTAGG	1 cut(s)	1276
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	686, 1240
AvaII	GGWCC	1 cut(s)	105
AvrII	CCTAGG	1 cut(s)	1276
BaeGI	GKGCMC	2 cut(s)	606, 1284
BalI	TGGCCA	1 cut(s)	1088
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	912, 1085, 1087
BccI	CCATC	3 cut(s)	365, 1050, 1162
BceAI	ACGGC	1 cut(s)	599
BciT130I	CCWGG	1 cut(s)	506
BciVI	GTATCC	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	208, 498, 1213
BfaI	CTAG	4 cut(s)	497, 551, 578, 1277
BfmI	CTRYAG	2 cut(s)	413, 1101
BfuAI	ACCTGC	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	3 cut(s)	926, 1074, 1101
BlnI	CCTAGG	1 cut(s)	1276
BlsI	GCNGC	3 cut(s)	927, 1075, 1102
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	255, 605
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	2 cut(s)	75, 1034
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	2 cut(s)	75, 1034
BpmI	CTGGAG	1 cut(s)	786
BpuEI	CTTGAG	2 cut(s)	745, 1195
BsaAI	YACGTR	1 cut(s)	1226
BsaJI	CCNNGG	3 cut(s)	504, 739, 1276
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 541
Bse1I	ACTGG	5 cut(s)	70, 522, 803, 921, 1029
Bse3DI	GCAATG	2 cut(s)	528, 1036
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	3 cut(s)	504, 739, 1276
BseGI	GGATG	4 cut(s)	376, 380, 550, 670
BseLI	CCNNNNNNNGG	2 cut(s)	250, 541
BseMI	GCAATG	2 cut(s)	528, 1036
BseMII	CTCAG	3 cut(s)	690, 976, 1282
BseNI	ACTGG	5 cut(s)	70, 522, 803, 921, 1029
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	2 cut(s)	606, 1284
BseXI	GCAGC	3 cut(s)	912, 1085, 1087
BseYI	CCCAGC	2 cut(s)	872, 1167
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	683, 1088
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	826
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	250, 541
BsmAI	GTCTC	3 cut(s)	208, 498, 1213
BsmBI	CGTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	683, 1088
Bsp1286I	GDGCHC	4 cut(s)	606, 782, 826, 1284
Bsp143I	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
BspANI	GGCC	2 cut(s)	683, 1088
BspCNI	CTCAG	3 cut(s)	691, 975, 1281
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	1295
BspLI	GGNNCC	2 cut(s)	255, 605
BspMAI	CTGCAG	1 cut(s)	1105
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	4 cut(s)	16, 158, 248, 261
BspT107I	GGYRCC	1 cut(s)	603
BsrDI	GCAATG	2 cut(s)	528, 1036
BsrI	ACTGG	5 cut(s)	70, 522, 803, 921, 1029
BssECI	CCNNGG	3 cut(s)	504, 739, 1276
BssMI	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
BssT1I	CCWWGG	2 cut(s)	739, 1276
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	417, 674
Bst6I	CTCTTC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	1226
BstC8I	GCNNGC	3 cut(s)	231, 471, 587
BstDEI	CTNAG	4 cut(s)	699, 731, 962, 1268
BstF5I	GGATG	4 cut(s)	376, 380, 550, 670
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	8 cut(s)	11, 37, 166, 241, 256, 324, 430, 1248
BstMAI	GTCTC	3 cut(s)	208, 498, 1213
BstMBI	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
BstMWI	GCNNNNNNNGC	3 cut(s)	873, 1109, 1269
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	413, 1101
BstSLI	GKGCMC	2 cut(s)	606, 1284
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	912, 1085, 1087
BstX2I	RGATCY	2 cut(s)	238, 253
BstYI	RGATCY	2 cut(s)	238, 253
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	683, 1088
BtsCI	GGATG	4 cut(s)	376, 380, 550, 670
BtsIMutI	CAGTG	2 cut(s)	810, 823
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	3 cut(s)	231, 471, 587
CaiI	CAGNNNCTG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	1295
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	2 cut(s)	628, 1269
Csp6I	GTAC	2 cut(s)	388, 691
CspCI	CAANNNNNGTGG	4 cut(s)	168, 203, 1078, 1113
CviAII	CATG	9 cut(s)	83, 89, 137, 150, 661, 679, 1219, 1254, 1296
CviQI	GTAC	2 cut(s)	388, 691
DdeI	CTNAG	4 cut(s)	699, 731, 962, 1268
DpnI	GATC	8 cut(s)	10, 36, 165, 240, 255, 323, 429, 1247
DpnII	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
DraI	TTTAAA	1 cut(s)	1021
EaeI	YGGCCR	2 cut(s)	681, 1086
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	739, 1276
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	143, 1023
EcoRI	GAATTC	2 cut(s)	93, 361
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	2 cut(s)	739, 1276
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	2 cut(s)	739, 1276
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	9 cut(s)	86, 92, 140, 153, 664, 682, 1222, 1257, 1299
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	9 cut(s)	82, 88, 136, 149, 660, 678, 1218, 1253, 1295
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	3 cut(s)	926, 1074, 1101
FokI	GGATG	4 cut(s)	383, 387, 557, 677
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	3 cut(s)	926, 1074, 1101
FspBI	CTAG	4 cut(s)	497, 551, 578, 1277
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	3 cut(s)	926, 1074, 1101
GsaI	CCCAGC	2 cut(s)	876, 1171
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	2 cut(s)	683, 1088
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	2 cut(s)	628, 1269
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	9 cut(s)	86, 92, 140, 153, 664, 682, 1222, 1257, 1299
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	4 cut(s)	44, 594, 1136, 1241
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	686, 1240
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	8 cut(s)	34, 245, 397, 436, 633, 718, 1038, 1047
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	3 cut(s)	282, 282, 628
HpyCH4III	ACNGT	2 cut(s)	417, 674
HpyCH4IV	ACGT	1 cut(s)	1225
HpyCH4V	TGCA	5 cut(s)	86, 405, 835, 1103, 1257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	873, 1109, 1269
HpyF3I	CTNAG	4 cut(s)	699, 731, 962, 1268
HpySE526I	ACGT	1 cut(s)	1225
Hsp92II	CATG	9 cut(s)	86, 92, 140, 153, 664, 682, 1222, 1257, 1299
HspAI	GCGC	1 cut(s)	583
Kzo9I	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
LmnI	GCTCC	6 cut(s)	190, 466, 796, 821, 1220, 1277
Lsp1109I	GCAGC	3 cut(s)	912, 1085, 1087
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	4 cut(s)	497, 551, 578, 1277
MaeII	ACGT	1 cut(s)	1225
MaeIII	GTNAC	4 cut(s)	616, 674, 734, 1105
MalI	GATC	8 cut(s)	10, 36, 165, 240, 255, 323, 429, 1247
MboI	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
MboII	GAAGA	6 cut(s)	29, 136, 139, 715, 1016, 1284
MflI	RGATCY	2 cut(s)	238, 253
MhlI	GDGCHC	4 cut(s)	606, 782, 826, 1284
MlsI	TGGCCA	1 cut(s)	1088
MluCI	AATT	8 cut(s)	76, 93, 361, 398, 830, 1052, 1092, 1126
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	2 cut(s)	588, 1235
MmeI	TCCRAC	1 cut(s)	268
Mox20I	TGGCCA	1 cut(s)	1088
MroXI	GAANNNNTTC	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	4 cut(s)	573, 878, 1014, 1020
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	1088
MspA1I	CMGCKG	2 cut(s)	341, 1167
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	873, 1109, 1269
NdeII	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
NlaIII	CATG	9 cut(s)	86, 92, 140, 153, 664, 682, 1222, 1257, 1299
NlaIV	GGNNCC	2 cut(s)	255, 605
NmeAIII	GCCGAG	1 cut(s)	709
NmuCI	GTSAC	3 cut(s)	616, 674, 734
PagI	TCATGA	1 cut(s)	1295
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	44, 1136
PkrI	GCNGC	3 cut(s)	927, 1075, 1102
PleI	GAGTC	2 cut(s)	588, 1235
PpsI	GAGTC	2 cut(s)	588, 1235
Ppu21I	YACGTR	1 cut(s)	1226
Psp6I	CCWGG	1 cut(s)	504
PspFI	CCCAGC	2 cut(s)	872, 1167
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	255, 605
PspPI	GGNCC	1 cut(s)	105
PsrI	GAACNNNNNNTAC	2 cut(s)	844, 876
PstI	CTGCAG	1 cut(s)	1105
PstNI	CAGNNNCTG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	238, 253
PvuII	CAGCTG	2 cut(s)	341, 1167
RsaI	GTAC	2 cut(s)	389, 692
RsaNI	GTAC	2 cut(s)	388, 691
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	4 cut(s)	573, 878, 1014, 1020
SatI	GCNGC	3 cut(s)	926, 1074, 1101
Sau3AI	GATC	8 cut(s)	8, 34, 163, 238, 253, 321, 427, 1245
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	2 cut(s)	588, 1235
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	4 cut(s)	606, 782, 826, 1284
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	2 cut(s)	413, 1101
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	760, 1210
SmoI	CTYRAG	2 cut(s)	760, 1210
Sse9I	AATT	8 cut(s)	76, 93, 361, 398, 830, 1052, 1092, 1126
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	4 cut(s)	497, 551, 578, 1277
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	2 cut(s)	739, 1276
TaaI	ACNGT	2 cut(s)	417, 674
TaiI	ACGT	1 cut(s)	1228
TaqI	TCGA	4 cut(s)	47, 450, 1157, 1244
TasI	AATT	8 cut(s)	76, 93, 361, 398, 830, 1052, 1092, 1126
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	44, 1136
Tru1I	TTAA	4 cut(s)	573, 878, 1014, 1020
Tru9I	TTAA	4 cut(s)	573, 878, 1014, 1020
TscAI	CASTG	2 cut(s)	810, 823
TseFI	GTSAC	3 cut(s)	616, 674, 734
TseI	GCWGC	3 cut(s)	925, 1073, 1100
Tsp45I	GTSAC	3 cut(s)	616, 674, 734
TspDTI	ATGAA	9 cut(s)	71, 138, 253, 374, 561, 660, 876, 1139, 1284
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	810, 823
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	4 cut(s)	76, 93, 361, 1126
XbaI	TCTAGA	2 cut(s)	496, 577
XmaJI	CCTAGG	1 cut(s)	1276
XmiI	GTMKAC	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	4 cut(s)	497, 551, 578, 1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.