Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011009

Physical Location & Seq

Genomic Coordinates Forward (+)

4908360 .. 4909137

Gene Structure 778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1069600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAAGATCAAGAAAGTAACATTTTGTTAGCCTTTTCTTCCCAAGATGGTGTTTTCATGGTGGTCTGCAGGGTTTTGTCATGGATAATCATCCACAGATGGAGCCAGAGGCACAAAAAGGGCCCCAAAACATGGCCTCTCGTGGGAGCGGCGATCGAACAGTTCACCGACTACGACAGGATGCACGATTGGCTCGTCAAGTACCTCTCGGAGTCAAACTCCGTCGTCGTCCCAATGCCATTCACAACTTACACTTACATTGCAGATCCTGCAAATGTAGAACATGTCCTAAAGACCAACTTTGCAAACTACCCTAAGGGTGAAGTGTACCGTTCGTACATGGAGGTCCTGCTCGGAGATGGGATCTTCAATGTGGACGGAGAGCTTTGGAGGAAACAGAGAAAGACTGCGAGCTTTGAATTTGCATCGAAGAATTTGAGGGATTTCAGCACTGTGGTCTTCAGAGATTACAGCCTCAAGCTCCATTCGATTCTGAGCCGAGCGTCTTTCCAAGGCCAACAAATCGATATGCAGGTGGAAACACATTCGTTATGGCATCCACATTGTCTGCCGAACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

194

Amino Acids

22.5

Weight (kDa)

6.7

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	41 - 177	4.6e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69500
fragaria_vesca	FvH4_4g31080 FvH4_4g31080
malus_domestica	MD13G1069300.v1.1 MD16G1069600.v1.1
prunus_persica	Prupe.1G277400_v2.0.a1
pyrus_communis	pycom13g06210 pycom13g06220
rosa_chinensis	RchiOBHm_Chr4g0439461
rosa_laevigata	RLG00000006269
rosa_multiflora	Rmu_sc0007276.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380380
rosa_rugosa	Rorug04G0318500
rosa_samantha	Rh4AG369800 Rh4BG381600 Rh4BG381700 Rh4CG396300 Rh4DG376200 Rh4DG376300
rosa_wichuraiana	Rw4G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	2 cut(s)	260, 371
AcsI	RAATTY	2 cut(s)	419, 433
AcuI	CTGAAG	1 cut(s)	445
AfaI	GTAC	3 cut(s)	203, 329, 338
AfiI	CCNNNNNNNGG	2 cut(s)	132, 143
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	370, 419
AluBI	AGCT	3 cut(s)	385, 414, 481
AluI	AGCT	3 cut(s)	385, 414, 481
AlwI	GGATC	2 cut(s)	260, 371
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	121, 134, 514
ApaI	GGGCCC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	419, 433
AspS9I	GGNCC	3 cut(s)	121, 122, 346
AsuHPI	GGTGA	2 cut(s)	157, 332
AvaII	GGWCC	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	451
BccI	CCATC	3 cut(s)	41, 93, 353
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	121, 122, 346
BmiI	GGNNCC	3 cut(s)	104, 123, 124
BmsI	GCATC	3 cut(s)	171, 434, 565
BpiI	GAAGAC	1 cut(s)	451
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuEI	CTTGAG	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 143
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	3 cut(s)	90, 186, 556
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	132, 143
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	123, 136, 516
BshVI	ATCGAT	1 cut(s)	525
BsiEI	CGRYCG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	132, 143
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	123, 136, 516
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	7, 153, 265, 363
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	3 cut(s)	123, 136, 516
BspCNI	CTCAG	1 cut(s)	486
BspDI	ATCGAT	1 cut(s)	525
BspLI	GGNNCC	3 cut(s)	104, 123, 124
BspMAI	CTGCAG	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	2 cut(s)	260, 371
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	4 cut(s)	7, 153, 265, 363
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	140
Bst4CI	ACNGT	3 cut(s)	162, 332, 454
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	315, 494
BstF5I	GGATG	3 cut(s)	90, 186, 556
BstKTI	GATC	4 cut(s)	10, 156, 268, 366
BstMBI	GATC	4 cut(s)	7, 153, 265, 363
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 269
BstNSI	RCATGY	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	265, 363
BstYI	RGATCY	2 cut(s)	265, 363
Bsu15I	ATCGAT	1 cut(s)	525
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	123, 136, 516
BsuTUI	ATCGAT	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	90, 186, 556
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	121, 122, 346
ClaI	ATCGAT	1 cut(s)	525
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	3 cut(s)	202, 328, 337
CviAII	CATG	5 cut(s)	58, 81, 132, 284, 340
CviQI	GTAC	3 cut(s)	202, 328, 337
DdeI	CTNAG	2 cut(s)	315, 494
DpnI	GATC	4 cut(s)	9, 155, 267, 365
DpnII	GATC	4 cut(s)	7, 153, 265, 363
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	445
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	3 cut(s)	121, 122, 346
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	5 cut(s)	61, 84, 135, 287, 343
FaiI	YATR	7 cut(s)	59, 82, 133, 285, 341, 530, 553
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	5 cut(s)	57, 80, 131, 283, 339
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	3 cut(s)	77, 193, 543
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	123, 136, 516
HgaI	GACGC	1 cut(s)	492
Hin1II	CATG	5 cut(s)	61, 84, 135, 287, 343
HinfI	GANTC	2 cut(s)	212, 490
HphI	GGTGA	2 cut(s)	157, 332
Hpy166II	GTNNAC	3 cut(s)	165, 328, 376
Hpy188I	TCNGA	4 cut(s)	211, 356, 464, 495
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	3 cut(s)	165, 328, 376
Hpy99I	CGWCG	2 cut(s)	227, 230
HpyCH4III	ACNGT	3 cut(s)	162, 332, 454
HpyCH4V	TGCA	7 cut(s)	69, 184, 263, 272, 305, 425, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 269
HpyF3I	CTNAG	2 cut(s)	315, 494
Hsp92II	CATG	5 cut(s)	61, 84, 135, 287, 343
Kzo9I	GATC	4 cut(s)	7, 153, 265, 363
LmnI	GCTCC	3 cut(s)	102, 146, 486
LpnPI	CCDG	6 cut(s)	55, 119, 163, 282, 362, 518
LweI	GCATC	3 cut(s)	171, 434, 565
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	4 cut(s)	9, 155, 267, 365
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	4 cut(s)	7, 153, 265, 363
MboII	GAAGA	5 cut(s)	17, 30, 358, 442, 451
MflI	RGATCY	2 cut(s)	265, 363
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	419, 433
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	7 cut(s)	102, 147, 215, 337, 384, 432, 485
MwoI	GCNNNNNNNGC	2 cut(s)	190, 269
NdeII	GATC	4 cut(s)	7, 153, 265, 363
NlaIII	CATG	5 cut(s)	61, 84, 135, 287, 343
NlaIV	GGNNCC	3 cut(s)	104, 123, 124
NmeAIII	GCCGAG	1 cut(s)	524
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	523
PciI	ACATGT	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	151
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	346
PscI	ACATGT	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	104, 123, 124
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	3 cut(s)	121, 122, 346
PspPPI	RGGWCCY	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	265, 363
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	203, 329, 338
RsaNI	GTAC	3 cut(s)	202, 328, 337
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	4 cut(s)	7, 153, 265, 363
Sau96I	GGNCC	3 cut(s)	121, 122, 346
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	6 cut(s)	207, 348, 387, 416, 483, 537
SfaNI	GCATC	3 cut(s)	171, 434, 565
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	419, 433
SsiI	CCGC	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	162, 332, 454
TaqI	TCGA	4 cut(s)	156, 428, 488, 525
TasI	AATT	2 cut(s)	419, 433
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	490
TscAI	CASTG	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	2 cut(s)	211, 393
TspRI	CASTG	1 cut(s)	457
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	419, 433
XceI	RCATGY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.