Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011009

Physical Location & Seq

Genomic Coordinates Forward (+)

67784833 .. 67786321

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGATATCTTTTATGGGATTCTTCTTCAGAAGATGGATGCAGTAAGGGATGGTTGATGCTAGCTTGCACGGTTTTGTTATGGATCATTATCTATAGATGGAGCCAGAGGAACAGAAAAGGTCCCAAATCATGGCCGTTAGTAGGAGCAGCAATTGAACAACTCATGAACTATAACAGAATGCATGATTGGCTTGTCAAGTACCTGTCCGAATCAAACTCTGTTGTTGTCCCAATGCCGTTCACAACTTACACTTACATTGCAGATCCAGCTAATGTAGAACATGTCCTCAAGACCAACTTTGCAAATTACCCAAAGGAATTGCTGATGAGGATGACTCTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAGATTGGAACCCTGGCTCCAGATCTACCAGATAATCAGTTTGCCCAGGCCTTCGACACTGCAAACATAATTGTCACATATCGATTCATTGATCCTCTATGGAAAATAAAGAAATTCTTAAATTGGGGATCAGAAGCTTTACTTGACAAGAGCATGAAAACCATAGATGATTTTACATATTCTGTAATTCGGAAGAGGAAATCAGAGATAAAAGACGCTCAACAGAGTTCAGATAAAAACCTGATGAAGCATGATATACTGTCAAGATTCATCGAGTTAGGTGAAGACCCAGAAAGCAACTTAACTGACAAAAGCCTCAGGGATGTTGTCCTCAACTTCGTAATAGCTGGTCGGGACACAACAGCAACCACTCTCTCATGGGCGATTTACATGATAATGACCCATCCCGAGGTAGCTGAGAAGCTATATACGGAGCTTAAGACTCTTGAAGAAGAACAAGCACAAGAAGAGAAAGTTTCATTACTCCAATATGACAAAGAGGACCTTGAATCATTCAATCAAAGAGTGAAACAATTTGCAGGACTCATGAACTATGATTCATTGGGGAGACTCTATTATTTGCATGCAGTCATCACAGAGACACTCCGTCTGTACCCTGCAGTCCCTCAGGTATGCATCTTCCTCATTGGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

342

Amino Acids

39.47

Weight (kDa)

5.41

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	105 - 334	1.2e-31	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69500
fragaria_vesca	FvH4_4g31080 FvH4_4g31080
malus_domestica	MD13G1069300.v1.1 MD16G1069600.v1.1
prunus_persica	Prupe.1G277400_v2.0.a1
pyrus_communis	pycom13g06210 pycom13g06220
rosa_chinensis	RchiOBHm_Chr4g0439461
rosa_laevigata	RLG00000006269
rosa_multiflora	Rmu_sc0007276.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380380
rosa_rugosa	Rorug04G0318500
rosa_samantha	Rh4AG369800 Rh4BG381600 Rh4BG381700 Rh4CG396300 Rh4DG376200 Rh4DG376300
rosa_wichuraiana	Rw4G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	132
AclWI	GGATC	4 cut(s)	92, 260, 458, 508
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	203, 986
AfiI	CCNNNNNNNGG	3 cut(s)	132, 143, 781
AflII	CTTAAG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	158, 821, 881, 889
AhdI	GACNNNNNGTC	1 cut(s)	978
AjnI	CCWGG	2 cut(s)	384, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AloI	GAACNNNNNNTCC	2 cut(s)	373, 405
AluBI	AGCT	7 cut(s)	65, 272, 509, 719, 788, 796, 808
AluI	AGCT	7 cut(s)	65, 272, 509, 719, 788, 796, 808
Alw26I	GTCTC	2 cut(s)	934, 965
AlwI	GGATC	4 cut(s)	92, 260, 458, 508
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	134, 420
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	122, 874
AsuHPI	GGTGA	1 cut(s)	665
AsuNHI	GCTAGC	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	2 cut(s)	122, 874
AxyI	CCTNAGG	2 cut(s)	689, 999
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	4 cut(s)	29, 45, 93, 783
BceAI	ACGGC	2 cut(s)	121, 223
BciT130I	CCWGG	2 cut(s)	386, 419
BcoDI	GTCTC	2 cut(s)	934, 965
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	2 cut(s)	94, 990
BfrI	CTTAAG	1 cut(s)	809
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	386, 419
Bme18I	GGWCC	2 cut(s)	122, 874
BmeRI	GACNNNNNGTC	1 cut(s)	978
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	2 cut(s)	122, 874
BmiI	GGNNCC	4 cut(s)	104, 124, 382, 390
BmrFI	CCNGG	2 cut(s)	386, 419
BmsI	GCATC	3 cut(s)	29, 48, 1017
BmtI	GCTAGC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	663
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpmI	CTGGAG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	384, 417, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 143, 781
Bse21I	CCTNAGG	2 cut(s)	689, 999
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	386, 419
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	384, 417, 780
BseGI	GGATG	5 cut(s)	44, 56, 339, 700, 775
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	3 cut(s)	132, 143, 781
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	703, 780, 1013
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	136, 422
BshVI	ATCGAT	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	779
BslFI	GGGAC	4 cut(s)	108, 215, 740, 980
BslI	CCNNNNNNNGG	3 cut(s)	132, 143, 781
BsmAI	GTCTC	2 cut(s)	934, 965
BsmFI	GGGAC	4 cut(s)	108, 215, 740, 980
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	136, 422
BsoBI	CYCGRG	1 cut(s)	779
Bsp143I	GATC	5 cut(s)	84, 265, 394, 463, 500
BspANI	GGCC	2 cut(s)	136, 422
BspCNI	CTCAG	3 cut(s)	702, 781, 1012
BspDI	ATCGAT	1 cut(s)	454
BspHI	TCATGA	2 cut(s)	165, 918
BspLI	GGNNCC	4 cut(s)	104, 124, 382, 390
BspMAI	CTGCAG	1 cut(s)	994
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	4 cut(s)	92, 260, 458, 508
BspTI	CTTAAG	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	384, 417, 780
BssMI	GATC	5 cut(s)	84, 265, 394, 463, 500
Bst2UI	CCWGG	2 cut(s)	386, 419
Bst4CI	ACNGT	2 cut(s)	73, 633
Bst6I	CTCTTC	2 cut(s)	560, 834
BstAFI	CTTAAG	1 cut(s)	809
BstC8I	GCNNGC	3 cut(s)	63, 67, 957
BstDEI	CTNAG	3 cut(s)	689, 789, 999
BstF5I	GGATG	5 cut(s)	44, 56, 339, 700, 775
BstKTI	GATC	5 cut(s)	87, 268, 397, 466, 503
BstMAI	GTCTC	2 cut(s)	934, 965
BstMBI	GATC	5 cut(s)	84, 265, 394, 463, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 269
BstNI	CCWGG	2 cut(s)	386, 419
BstNSI	RCATGY	2 cut(s)	287, 959
BstSCI	CCNGG	2 cut(s)	384, 417
BstSFI	CTRYAG	2 cut(s)	94, 990
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	2 cut(s)	265, 394
BstYI	RGATCY	2 cut(s)	265, 394
Bsu15I	ATCGAT	1 cut(s)	454
Bsu36I	CCTNAGG	2 cut(s)	689, 999
BsuRI	GGCC	2 cut(s)	136, 422
BsuTUI	ATCGAT	1 cut(s)	454
BtsCI	GGATG	5 cut(s)	44, 56, 339, 700, 775
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	3 cut(s)	63, 67, 957
CciI	TCATGA	2 cut(s)	165, 918
Cfr13I	GGNCC	2 cut(s)	122, 874
ClaI	ATCGAT	1 cut(s)	454
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	202, 985
CviQI	GTAC	2 cut(s)	202, 985
DdeI	CTNAG	3 cut(s)	689, 789, 999
DpnI	GATC	5 cut(s)	86, 267, 396, 465, 502
DpnII	GATC	5 cut(s)	84, 265, 394, 463, 500
DriI	GACNNNNNGTC	1 cut(s)	978
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	560, 834
Eam1105I	GACNNNNNGTC	1 cut(s)	978
EarI	CTCTTC	2 cut(s)	560, 834
Eco147I	AGGCCT	1 cut(s)	422
Eco32I	GATATC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	122, 874
Eco57I	CTGAAG	1 cut(s)	12
Eco81I	CCTNAGG	2 cut(s)	689, 999
Eco88I	CYCGRG	1 cut(s)	779
EcoO109I	RGGNCCY	2 cut(s)	122, 874
EcoRII	CCWGG	2 cut(s)	384, 417
EcoRV	GATATC	1 cut(s)	8
EcoT22I	ATGCAT	2 cut(s)	186, 1010
FalI	AAGNNNNNCTT	8 cut(s)	284, 316, 473, 505, 498, 530, 861, 893
FaqI	GGGAC	4 cut(s)	108, 215, 740, 980
FauNDI	CATATG	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	5 cut(s)	51, 63, 346, 707, 762
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	136, 422
HgaI	GACGC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	507
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	6 cut(s)	31, 211, 505, 564, 577, 604
Hpy188III	TCNNGA	9 cut(s)	166, 292, 341, 392, 636, 725, 779, 818, 919
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	73, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 269
HpyF3I	CTNAG	3 cut(s)	689, 789, 999
Kzo9I	GATC	5 cut(s)	84, 265, 394, 463, 500
LmnI	GCTCC	4 cut(s)	102, 146, 394, 805
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	3 cut(s)	29, 48, 1017
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	5 cut(s)	86, 267, 396, 465, 502
MboI	GATC	5 cut(s)	84, 265, 394, 463, 500
MboII	GAAGA	9 cut(s)	15, 18, 44, 577, 668, 833, 836, 851, 1003
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	2 cut(s)	265, 394
MluCI	AATT	8 cut(s)	153, 307, 320, 441, 485, 493, 558, 905
MlyI	GAGTC	5 cut(s)	331, 338, 808, 909, 936
Mph1103I	ATGCAT	2 cut(s)	186, 1010
MseI	TTAA	3 cut(s)	491, 674, 810
MslI	CAYNNNNRTG	1 cut(s)	767
MspCI	CTTAAG	1 cut(s)	809
MspR9I	CCNGG	2 cut(s)	386, 419
MunI	CAATTG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	386, 419
MwoI	GCNNNNNNNGC	2 cut(s)	190, 269
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	5 cut(s)	84, 265, 394, 463, 500
NheI	GCTAGC	1 cut(s)	61
NlaIV	GGNNCC	4 cut(s)	104, 124, 382, 390
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	2 cut(s)	186, 1010
NspI	RCATGY	2 cut(s)	287, 959
PaeI	GCATGC	1 cut(s)	959
PagI	TCATGA	2 cut(s)	165, 918
PceI	AGGCCT	1 cut(s)	422
PciI	ACATGT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	6 cut(s)	20, 212, 456, 639, 881, 929
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	5 cut(s)	331, 338, 808, 909, 936
PpsI	GAGTC	5 cut(s)	331, 338, 808, 909, 936
PpuMI	RGGWCCY	2 cut(s)	122, 874
PscI	ACATGT	1 cut(s)	283
Psp5II	RGGWCCY	2 cut(s)	122, 874
Psp6I	CCWGG	2 cut(s)	384, 417
PspGI	CCWGG	2 cut(s)	384, 417
PspN4I	GGNNCC	4 cut(s)	104, 124, 382, 390
PspPI	GGNCC	2 cut(s)	122, 874
PspPPI	RGGWCCY	2 cut(s)	122, 874
PstI	CTGCAG	1 cut(s)	994
PsuI	RGATCY	2 cut(s)	265, 394
RsaI	GTAC	2 cut(s)	203, 986
RsaNI	GTAC	2 cut(s)	202, 985
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	491, 674, 810
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	5 cut(s)	84, 265, 394, 463, 500
Sau96I	GGNCC	2 cut(s)	122, 874
SchI	GAGTC	5 cut(s)	331, 338, 808, 909, 936
ScrFI	CCNGG	2 cut(s)	386, 419
SfaNI	GCATC	3 cut(s)	29, 48, 1017
SfcI	CTRYAG	2 cut(s)	94, 990
SinI	GGWCC	2 cut(s)	122, 874
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	290, 809
SmoI	CTYRAG	2 cut(s)	290, 809
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	8 cut(s)	153, 307, 320, 441, 485, 493, 558, 905
SseBI	AGGCCT	1 cut(s)	422
SspMI	CTAG	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	384, 417
TaaI	ACNGT	2 cut(s)	73, 633
TaqI	TCGA	3 cut(s)	426, 454, 645
TasI	AATT	8 cut(s)	153, 307, 320, 441, 485, 493, 558, 905
TfiI	GAWTC	6 cut(s)	20, 212, 456, 639, 881, 929
Tru1I	TTAA	3 cut(s)	491, 674, 810
Tru9I	TTAA	3 cut(s)	491, 674, 810
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	8 cut(s)	182, 448, 542, 631, 632, 840, 921, 935
TspGWI	ACGGA	2 cut(s)	818, 968
TspRI	CASTG	1 cut(s)	436
Van91I	CCANNNNNTGG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	2 cut(s)	122, 874
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	2 cut(s)	287, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	62
Zsp2I	ATGCAT	2 cut(s)	186, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.