RchiOBHm_Chr4g0439461

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
61911399 .. 61913953
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40751

Sequence Viewer

Length: 1608 bp
ATGGGATATCTTTTATGGGATTCTTCTTCAGAAGATGGATGCAGTAAGGGATGGTTGATGCTAGCTTGCACGGTTTTGTTATGGATCATTATCTATAGATGGAGCCAGAGGAACAGAAAAGGTCCCAAATCATGGCCGTTAGTAGGAGCAGCAATTGAACAACTCATGAACTATAACAGAATGCATGATTGGCTTGTCAAGTACCTGTCCGAATCAAACTCTGTTGTTGTCCCAATGCCGTTCACAACTTACACTTACATTGCAGATCCAGCTAATGTAGAACATGTCCTCAAGACCAACTTTGCAAATTACCCAAAGGGTGAAGTGTACCAATCGTACATGCAAGTCCTGCTCGGAGACGGAATCTTCAATTCAGATGGAGAAATTTGGAGGAAACAGAGAAAGACTGCAAGCTTCGAATTTGCATCCAAGAATTTGAGGGACTTCAGCACTGTTGTCTTCAGAGATTACAGCCTAAAGCTCCATAGCATTCTGAGTCAAGCATCTTTTCAAGGCCAACATGTAGACATGCAGGAATTGCTGATGAGGATGACTCTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAGATTGGAACCCTGGCTCCAGATCTACCAGATAATCAGTTTGCCCAGGCCTTCGACACTGCAAACATAATTGTCACATATCGATTCATTGATCCTCTATGGAAAATAAAGAAATTCTTAAATTGGGGATCAGAAGCTTTACTTGACAAGAGCATGAAAACCATAGATGATTTTACATATTCTGTAATTCGGAAGAGGAAATCAGAGATAAAAGACGCTCAACAGAGTTCAGATAAAAACCTGATGAAGCATGATATACTGTCAAGATTCATCGAGTTAGGTGAAGACCCAGAAAGCAACTTAACTGACAAAAGCCTCAGGGATGTTGTCCTCAACTTCGTAATAGCTGGTCGGGACACAACAGCAACCACTCTCTCATGGGCGATTTACATGATAATGACCCATCCCGAGGTAGCTGAGAAGCTATATACGGAGCTTAAGACTCTTGAAGAAGAACAAGCACAAGAAGAGAAAGTTTCATTACTCCAATATGACAAAGAGGACCTTGAATCATTCAATCAAAGAGTGAAACAATTTGCAGGACTCATGAACTATGATTCATTGGGGAGACTCTATTATTTGCATGCAGTCATCACAGAGACACTCCGTCTGTACCCTGCAGTCCCTCAGGACCCTAAAGGCATATTGGAAGATGATGTTCTACCAGATGGAACAAAAGTCAGAGCAGGAGGAATGGTGACCTATGTTCCCTATTCAATGGGTAGAATGGAGTACAATTGGGGTGCTGATGCTGCTTCATTTAAGCCAGAGAGATGGCTCAATGACGGTTACTTCTTAAATGCATCGCCATTTAAGTTCACCGCATTTCAGGCAGGACCAAGAATATGCCTAGGGAAGGACTCTGCATACCTCCAAATGAAGATGGTACTGGCCATTCTGTGCAGATTTTTCACATTCACTTTGGTTCCCGGTCATCCAGTTGAGTATAGGATGATGACAATTTTATCAATGAAGCATGGCTTGAAGCTTACAGTAGCCAGACGCTCATCAGATGCATGA

Protein Analysis

535

Amino Acids

61.4

Weight (kDa)

6.35

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 41 - 524 3e-70 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011009)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 132
AccI GTMKAC 1 cut(s) 525
AciI CCGC 1 cut(s) 1410
AclWI GGATC 4 cut(s) 92, 260, 674, 724
AcoI YGGCCR 2 cut(s) 134, 1479
AcsI RAATTY 4 cut(s) 384, 419, 433, 701
AcuI CTGAAG 3 cut(s) 12, 430, 445
AfaI GTAC 6 cut(s) 203, 329, 338, 1202, 1322, 1476
AfiI CCNNNNNNNGG 4 cut(s) 132, 143, 997, 1444
AflII CTTAAG 1 cut(s) 1025
AflIII ACRYGT 2 cut(s) 283, 520
AgsI TTSAA 8 cut(s) 158, 370, 512, 1037, 1097, 1105, 1305, 1573
AhdI GACNNNNNGTC 1 cut(s) 1194
AjnI CCWGG 2 cut(s) 600, 633
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AloI GAACNNNNNNTCC 2 cut(s) 589, 621
Alw26I GTCTC 3 cut(s) 351, 1150, 1181
AlwI GGATC 4 cut(s) 92, 260, 674, 724
Ama87I CYCGRG 1 cut(s) 995
AoxI GGCC 4 cut(s) 134, 514, 636, 1479
ApeKI GCWGC 2 cut(s) 149, 1340
ApoI RAATTY 4 cut(s) 384, 419, 433, 701
AspA2I CCTAGG 1 cut(s) 1438
AspS9I GGNCC 4 cut(s) 122, 1090, 1219, 1424
AsuC2I CCSGG 1 cut(s) 1518
AsuHPI GGTGA 4 cut(s) 332, 881, 1297, 1399
AsuII TTCGAA 1 cut(s) 417
AsuNHI GCTAGC 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 995
AvaII GGWCC 4 cut(s) 122, 1090, 1219, 1424
AvrII CCTAGG 1 cut(s) 1438
AxyI CCTNAGG 2 cut(s) 905, 1215
BalI TGGCCA 1 cut(s) 1481
BbsI GAAGAC 2 cut(s) 451, 879
BbvI GCAGC 2 cut(s) 161, 1327
BccI CCATC 8 cut(s) 29, 45, 93, 371, 999, 1250, 1356, 1465
BceAI ACGGC 2 cut(s) 121, 223
BciT130I CCWGG 2 cut(s) 602, 635
BcnI CCSGG 1 cut(s) 1518
BcoDI GTCTC 3 cut(s) 351, 1150, 1181
BfaI CTAG 2 cut(s) 62, 1439
BfmI CTRYAG 2 cut(s) 94, 1206
BfrI CTTAAG 1 cut(s) 1025
BglII AGATCT 1 cut(s) 610
BisI GCNGC 2 cut(s) 150, 1341
BlnI CCTAGG 1 cut(s) 1438
BlsI GCNGC 2 cut(s) 151, 1342
Bme1390I CCNGG 3 cut(s) 602, 635, 1518
Bme18I GGWCC 4 cut(s) 122, 1090, 1219, 1424
BmeRI GACNNNNNGTC 1 cut(s) 1194
BmeT110I CYCGRG 1 cut(s) 995
BmgT120I GGNCC 4 cut(s) 122, 1090, 1219, 1424
BmiI GGNNCC 6 cut(s) 104, 124, 598, 606, 1221, 1515
BmrFI CCNGG 3 cut(s) 602, 635, 1518
BmsI GCATC 7 cut(s) 29, 48, 434, 512, 1327, 1400, 1591
BmtI GCTAGC 1 cut(s) 65
BpiI GAAGAC 2 cut(s) 451, 879
BplI GAGNNNNNCTC 2 cut(s) 538, 570
BpmI CTGGAG 1 cut(s) 591
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 1518
Bsa29I ATCGAT 1 cut(s) 670
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 4 cut(s) 600, 633, 996, 1438
BsaXI ACNNNNNCTCC 4 cut(s) 589, 619, 1269, 1299
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 143, 997, 1444
Bse1I ACTGG 2 cut(s) 1482, 1526
Bse21I CCTNAGG 2 cut(s) 905, 1215
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 602, 635
BseCI ATCGAT 1 cut(s) 670
BseDI CCNNGG 4 cut(s) 600, 633, 996, 1438
BseGI GGATG 8 cut(s) 44, 56, 425, 555, 916, 991, 1522, 1545
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 4 cut(s) 132, 143, 997, 1444
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 4 cut(s) 485, 919, 996, 1229
BseNI ACTGG 2 cut(s) 1482, 1526
BseXI GCAGC 2 cut(s) 161, 1327
BsgI GTGCAG 1 cut(s) 1510
BshFI GGCC 4 cut(s) 136, 516, 638, 1481
BshVI ATCGAT 1 cut(s) 670
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 1 cut(s) 1518
BslFI GGGAC 5 cut(s) 108, 215, 455, 956, 1196
BslI CCNNNNNNNGG 4 cut(s) 132, 143, 997, 1444
BsmAI GTCTC 3 cut(s) 351, 1150, 1181
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 5 cut(s) 108, 215, 455, 956, 1196
BsmI GAATGC 2 cut(s) 186, 489
BsnI GGCC 4 cut(s) 136, 516, 638, 1481
BsoBI CYCGRG 1 cut(s) 995
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 5 cut(s) 84, 265, 610, 679, 716
BspACI CCGC 1 cut(s) 1410
BspANI GGCC 4 cut(s) 136, 516, 638, 1481
BspCNI CTCAG 4 cut(s) 486, 918, 997, 1228
BspDI ATCGAT 1 cut(s) 670
BspHI TCATGA 2 cut(s) 165, 1134
BspLI GGNNCC 6 cut(s) 104, 124, 598, 606, 1221, 1515
BspMAI CTGCAG 1 cut(s) 1210
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 4 cut(s) 92, 260, 674, 724
BspT104I TTCGAA 1 cut(s) 417
BspTI CTTAAG 1 cut(s) 1025
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 2 cut(s) 1482, 1526
BssECI CCNNGG 4 cut(s) 600, 633, 996, 1438
BssMI GATC 5 cut(s) 84, 265, 610, 679, 716
BssT1I CCWWGG 1 cut(s) 1438
Bst2UI CCWGG 2 cut(s) 602, 635
Bst4CI ACNGT 5 cut(s) 73, 454, 849, 1376, 1582
Bst6I CTCTTC 2 cut(s) 776, 1050
BstAFI CTTAAG 1 cut(s) 1025
BstAPI GCANNNNNTGC 2 cut(s) 349, 538
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 4 cut(s) 63, 67, 412, 1173
BstDEI CTNAG 4 cut(s) 494, 905, 1005, 1215
BstEII GGTNACC 1 cut(s) 1285
BstENI CCTNNNNNAGG 1 cut(s) 1442
BstF5I GGATG 8 cut(s) 44, 56, 425, 555, 916, 991, 1522, 1545
BstKTI GATC 5 cut(s) 87, 268, 613, 682, 719
BstMAI GTCTC 3 cut(s) 351, 1150, 1181
BstMBI GATC 5 cut(s) 84, 265, 610, 679, 716
BstMWI GCNNNNNNNGC 6 cut(s) 190, 269, 349, 538, 1340, 1418
BstNI CCWGG 2 cut(s) 602, 635
BstNSI RCATGY 5 cut(s) 287, 343, 524, 532, 1175
BstPI GGTNACC 1 cut(s) 1285
BstSCI CCNGG 3 cut(s) 600, 633, 1516
BstSFI CTRYAG 2 cut(s) 94, 1206
BstV1I GCAGC 2 cut(s) 161, 1327
BstV2I GAAGAC 2 cut(s) 451, 879
BstX2I RGATCY 2 cut(s) 265, 610
BstXI CCANNNNNNTGG 1 cut(s) 1362
BstYI RGATCY 2 cut(s) 265, 610
Bsu15I ATCGAT 1 cut(s) 670
Bsu36I CCTNAGG 2 cut(s) 905, 1215
BsuRI GGCC 4 cut(s) 136, 516, 638, 1481
BsuTUI ATCGAT 1 cut(s) 670
BtgZI GCGATG 1 cut(s) 1377
BtsCI GGATG 8 cut(s) 44, 56, 425, 555, 916, 991, 1522, 1545
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 450, 645
Cac8I GCNNGC 4 cut(s) 63, 67, 412, 1173
CciI TCATGA 2 cut(s) 165, 1134
Cfr13I GGNCC 4 cut(s) 122, 1090, 1219, 1424
ClaI ATCGAT 1 cut(s) 670
CseI GACGC 2 cut(s) 812, 1599
Csp6I GTAC 6 cut(s) 202, 328, 337, 1201, 1321, 1475
CviQI GTAC 6 cut(s) 202, 328, 337, 1201, 1321, 1475
DdeI CTNAG 4 cut(s) 494, 905, 1005, 1215
DpnI GATC 5 cut(s) 86, 267, 612, 681, 718
DpnII GATC 5 cut(s) 84, 265, 610, 679, 716
DriI GACNNNNNGTC 1 cut(s) 1194
EaeI YGGCCR 2 cut(s) 134, 1479
Eam1104I CTCTTC 2 cut(s) 776, 1050
Eam1105I GACNNNNNGTC 1 cut(s) 1194
EarI CTCTTC 2 cut(s) 776, 1050
Eco130I CCWWGG 1 cut(s) 1438
Eco147I AGGCCT 1 cut(s) 638
Eco32I GATATC 1 cut(s) 8
Eco47I GGWCC 4 cut(s) 122, 1090, 1219, 1424
Eco57I CTGAAG 3 cut(s) 12, 430, 445
Eco81I CCTNAGG 2 cut(s) 905, 1215
Eco88I CYCGRG 1 cut(s) 995
Eco91I GGTNACC 1 cut(s) 1285
EcoNI CCTNNNNNAGG 1 cut(s) 1442
EcoO109I RGGNCCY 3 cut(s) 122, 1090, 1219
EcoO65I GGTNACC 1 cut(s) 1285
EcoRII CCWGG 2 cut(s) 600, 633
EcoRV GATATC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 1438
EcoT22I ATGCAT 3 cut(s) 186, 1393, 1606
ErhI CCWWGG 1 cut(s) 1438
Esp3I CGTCTC 1 cut(s) 351
FaqI GGGAC 5 cut(s) 108, 215, 455, 956, 1196
FauNDI CATATG 1 cut(s) 566
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 150, 1341
FokI GGATG 8 cut(s) 51, 63, 412, 562, 923, 978, 1509, 1552
Fsp4HI GCNGC 2 cut(s) 150, 1341
FspBI CTAG 2 cut(s) 62, 1439
GluI GCNGC 2 cut(s) 150, 1341
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 4 cut(s) 136, 516, 638, 1481
HapII CCGG 1 cut(s) 1518
HgaI GACGC 2 cut(s) 812, 1599
HindIII AAGCTT 3 cut(s) 412, 723, 1574
HpaII CCGG 1 cut(s) 1518
HphI GGTGA 4 cut(s) 332, 881, 1297, 1399
Hpy166II GTNNAC 4 cut(s) 243, 328, 526, 1407
Hpy8I GTNNAC 4 cut(s) 243, 328, 526, 1407
HpyAV CCTTC 2 cut(s) 649, 1438
HpyCH4III ACNGT 5 cut(s) 73, 454, 849, 1376, 1582
HpyF10VI GCNNNNNNNGC 6 cut(s) 190, 269, 349, 538, 1340, 1418
HpyF3I CTNAG 4 cut(s) 494, 905, 1005, 1215
Kzo9I GATC 5 cut(s) 84, 265, 610, 679, 716
LmnI GCTCC 5 cut(s) 102, 146, 486, 610, 1021
Lsp1109I GCAGC 2 cut(s) 161, 1327
LweI GCATC 7 cut(s) 29, 48, 434, 512, 1327, 1400, 1591
MaeI CTAG 2 cut(s) 62, 1439
MaeIII GTNAC 3 cut(s) 661, 1285, 1376
MalI GATC 5 cut(s) 86, 267, 612, 681, 718
MboI GATC 5 cut(s) 84, 265, 610, 679, 716
MfeI CAATTG 2 cut(s) 153, 1324
MflI RGATCY 2 cut(s) 265, 610
MlsI TGGCCA 1 cut(s) 1481
MluNI TGGCCA 1 cut(s) 1481
MlyI GAGTC 7 cut(s) 505, 547, 554, 1024, 1125, 1152, 1442
Mox20I TGGCCA 1 cut(s) 1481
Mph1103I ATGCAT 3 cut(s) 186, 1393, 1606
MscI TGGCCA 1 cut(s) 1481
MseI TTAA 6 cut(s) 707, 890, 1026, 1350, 1385, 1401
MslI CAYNNNNRTG 1 cut(s) 983
Msp20I TGGCCA 1 cut(s) 1481
MspCI CTTAAG 1 cut(s) 1025
MspI CCGG 1 cut(s) 1518
MspR9I CCNGG 3 cut(s) 602, 635, 1518
MunI CAATTG 2 cut(s) 153, 1324
Mva1269I GAATGC 2 cut(s) 186, 489
MvaI CCWGG 2 cut(s) 602, 635
MwoI GCNNNNNNNGC 6 cut(s) 190, 269, 349, 538, 1340, 1418
NciI CCSGG 1 cut(s) 1518
NdeI CATATG 1 cut(s) 566
NdeII GATC 5 cut(s) 84, 265, 610, 679, 716
NheI GCTAGC 1 cut(s) 61
NlaIV GGNNCC 6 cut(s) 104, 124, 598, 606, 1221, 1515
NmuCI GTSAC 2 cut(s) 661, 1285
NsiI ATGCAT 3 cut(s) 186, 1393, 1606
NspI RCATGY 5 cut(s) 287, 343, 524, 532, 1175
NspV TTCGAA 1 cut(s) 417
PaeI GCATGC 1 cut(s) 1175
PagI TCATGA 2 cut(s) 165, 1134
PceI AGGCCT 1 cut(s) 638
PciI ACATGT 2 cut(s) 283, 520
PctI GAATGC 2 cut(s) 186, 489
PfeI GAWTC 7 cut(s) 20, 212, 363, 672, 855, 1097, 1145
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 2 cut(s) 151, 1342
PleI GAGTC 7 cut(s) 504, 547, 554, 1024, 1125, 1152, 1442
PpsI GAGTC 7 cut(s) 504, 547, 554, 1024, 1125, 1152, 1442
PpuMI RGGWCCY 3 cut(s) 122, 1090, 1219
PscI ACATGT 2 cut(s) 283, 520
Psp5II RGGWCCY 3 cut(s) 122, 1090, 1219
Psp6I CCWGG 2 cut(s) 600, 633
PspEI GGTNACC 1 cut(s) 1285
PspGI CCWGG 2 cut(s) 600, 633
PspN4I GGNNCC 6 cut(s) 104, 124, 598, 606, 1221, 1515
PspPI GGNCC 4 cut(s) 122, 1090, 1219, 1424
PspPPI RGGWCCY 3 cut(s) 122, 1090, 1219
PstI CTGCAG 1 cut(s) 1210
PsuI RGATCY 2 cut(s) 265, 610
RsaI GTAC 6 cut(s) 203, 329, 338, 1202, 1322, 1476
RsaNI GTAC 6 cut(s) 202, 328, 337, 1201, 1321, 1475
RseI CAYNNNNRTG 1 cut(s) 983
SaqAI TTAA 6 cut(s) 707, 890, 1026, 1350, 1385, 1401
SatI GCNGC 2 cut(s) 150, 1341
Sau3AI GATC 5 cut(s) 84, 265, 610, 679, 716
Sau96I GGNCC 4 cut(s) 122, 1090, 1219, 1424
SchI GAGTC 7 cut(s) 505, 547, 554, 1024, 1125, 1152, 1442
ScrFI CCNGG 3 cut(s) 602, 635, 1518
SfaNI GCATC 7 cut(s) 29, 48, 434, 512, 1327, 1400, 1591
SfcI CTRYAG 2 cut(s) 94, 1206
SfuI TTCGAA 1 cut(s) 417
SinI GGWCC 4 cut(s) 122, 1090, 1219, 1424
SmiMI CAYNNNNRTG 1 cut(s) 983
SmlI CTYRAG 2 cut(s) 290, 1025
SmoI CTYRAG 2 cut(s) 290, 1025
SphI GCATGC 1 cut(s) 1175
SseBI AGGCCT 1 cut(s) 638
SsiI CCGC 1 cut(s) 1410
SspMI CTAG 2 cut(s) 62, 1439
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 3 cut(s) 600, 633, 1516
StyI CCWWGG 1 cut(s) 1438
TaaI ACNGT 5 cut(s) 73, 454, 849, 1376, 1582
TaqI TCGA 4 cut(s) 417, 642, 670, 861
TatI WGTACW 1 cut(s) 1320
TfiI GAWTC 7 cut(s) 20, 212, 363, 672, 855, 1097, 1145
Tru1I TTAA 6 cut(s) 707, 890, 1026, 1350, 1385, 1401
Tru9I TTAA 6 cut(s) 707, 890, 1026, 1350, 1385, 1401
TscAI CASTG 2 cut(s) 457, 652
TseFI GTSAC 2 cut(s) 661, 1285
TseI GCWGC 2 cut(s) 149, 1340
Tsp45I GTSAC 2 cut(s) 661, 1285
TspGWI ACGGA 3 cut(s) 375, 1034, 1184
TspRI CASTG 2 cut(s) 457, 652
Van91I CCANNNNNTGG 1 cut(s) 132
Vha464I CTTAAG 1 cut(s) 1025
VpaK11BI GGWCC 4 cut(s) 122, 1090, 1219, 1424
XagI CCTNNNNNAGG 1 cut(s) 1442
XapI RAATTY 4 cut(s) 384, 419, 433, 701
XceI RCATGY 5 cut(s) 287, 343, 524, 532, 1175
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmaJI CCTAGG 1 cut(s) 1438
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 2 cut(s) 62, 1439
Zsp2I ATGCAT 3 cut(s) 186, 1393, 1606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.