Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011009

Physical Location & Seq

Genomic Coordinates Forward (+)

59428560 .. 59428901

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG376200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGATATCTTTTATGGGATTCTTCTTCAGAAGATGGATGCAGTAAGGGATGGTTGATGCTAGCTTGCACGGTTTTGTTATGGATCATTATCTATAGATGGAGCCAGAGGAACAGAAAAGGTCCCAAATCATGGCCGTTAGTAGGAGCAGCAATTGAACAACTCATGAACTATAACAGAATGCATGATTGGCTTGTCAAGTACCTGTCCGAATCAAACTCTGTTGTTGTCCCAATGCCGTTCACAACTTACACTTACATTGCAGATCCAGCTAATGTAGAACATGTCCTCAAGACCAACTTTGCAAATTACCCAAAGGTAAGTATCAAAGTCTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

113

Amino Acids

13.03

Weight (kDa)

8.93

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69500
fragaria_vesca	FvH4_4g31080 FvH4_4g31080
malus_domestica	MD13G1069300.v1.1 MD16G1069600.v1.1
prunus_persica	Prupe.1G277400_v2.0.a1
pyrus_communis	pycom13g06210 pycom13g06220
rosa_chinensis	RchiOBHm_Chr4g0439461
rosa_laevigata	RLG00000006269
rosa_multiflora	Rmu_sc0007276.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380380
rosa_rugosa	Rorug04G0318500
rosa_samantha	Rh4AG369800 Rh4BG381600 Rh4BG381700 Rh4CG396300 Rh4DG376200 Rh4DG376300
rosa_wichuraiana	Rw4G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	132
AclWI	GGATC	2 cut(s)	92, 260
AcoI	YGGCCR	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	132, 143
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	2 cut(s)	65, 272
AluI	AGCT	2 cut(s)	65, 272
AlwI	GGATC	2 cut(s)	92, 260
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	122
AsuNHI	GCTAGC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	3 cut(s)	29, 45, 93
BceAI	ACGGC	2 cut(s)	121, 223
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	104, 124
BmsI	GCATC	2 cut(s)	29, 48
BmtI	GCTAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 143
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	89
BseGI	GGATG	2 cut(s)	44, 56
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	132, 143
BseMI	GCAATG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	1 cut(s)	136
BslFI	GGGAC	2 cut(s)	108, 215
BslI	CCNNNNNNNGG	2 cut(s)	132, 143
BsmFI	GGGAC	2 cut(s)	108, 215
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	84, 265
BspANI	GGCC	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	104, 124
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	2 cut(s)	92, 260
BsrDI	GCAATG	1 cut(s)	258
BssMI	GATC	2 cut(s)	84, 265
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	63, 67
BstF5I	GGATG	2 cut(s)	44, 56
BstKTI	GATC	2 cut(s)	87, 268
BstMBI	GATC	2 cut(s)	84, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 269
BstNSI	RCATGY	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	44, 56
Cac8I	GCNNGC	2 cut(s)	63, 67
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	132, 166, 185, 284
CviJI	RGCY	5 cut(s)	65, 105, 136, 193, 272
CviKI_1	RGCY	5 cut(s)	65, 105, 136, 193, 272
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	2 cut(s)	86, 267
DpnII	GATC	2 cut(s)	84, 265
EaeI	YGGCCR	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	186
FaeI	CATG	4 cut(s)	135, 169, 188, 287
FaiI	YATR	9 cut(s)	16, 82, 96, 133, 167, 174, 186, 285, 340
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	2 cut(s)	108, 215
FatI	CATG	4 cut(s)	131, 165, 184, 283
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	51, 63
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	135, 169, 188, 287
HinfI	GANTC	2 cut(s)	20, 212
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	31, 211
Hpy188III	TCNNGA	2 cut(s)	166, 292
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	5 cut(s)	42, 69, 184, 263, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 269
Hsp92II	CATG	4 cut(s)	135, 169, 188, 287
Kzo9I	GATC	2 cut(s)	84, 265
LmnI	GCTCC	2 cut(s)	102, 146
LpnPI	CCDG	3 cut(s)	119, 218, 282
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	2 cut(s)	29, 48
MaeI	CTAG	1 cut(s)	62
MalI	GATC	2 cut(s)	86, 267
MboI	GATC	2 cut(s)	84, 265
MboII	GAAGA	3 cut(s)	15, 18, 44
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	153, 307
MnlI	CCTC	2 cut(s)	102, 299
Mph1103I	ATGCAT	1 cut(s)	186
MunI	CAATTG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	190, 269
NdeII	GATC	2 cut(s)	84, 265
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	135, 169, 188, 287
NlaIV	GGNNCC	2 cut(s)	104, 124
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	20, 212
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	122
PscI	ACATGT	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	104, 124
PspPI	GGNCC	1 cut(s)	122
PspPPI	RGGWCCY	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	84, 265
Sau96I	GGNCC	1 cut(s)	122
SetI	ASST	5 cut(s)	67, 124, 207, 274, 321
SfaNI	GCATC	2 cut(s)	29, 48
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	153, 307
SspMI	CTAG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	73
TasI	AATT	2 cut(s)	153, 307
TfiI	GAWTC	2 cut(s)	20, 212
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	122
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.