Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011009

Physical Location & Seq

Genomic Coordinates Forward (+)

53704183 .. 53704482

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG381700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGGATGACTCTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAGATTGGAACCCTGGCTCCAGATCTACCAGATAATCAGTTTGCCCAGGCCTTCGACACTGCAAACATAATTGTCACATATCGATTCATTGATCCACTATGGAAAATAAAGAAATTCTTAAATTGGGGATCAGAAGCTTTACTTGACAAGAGCATGAAAACCATAGATGATTTTACATATTCTGTAATTCGGAAAAGGAAATCAGAGATAAAAGAAGCTCAACAGAGTTCAGATAAAAACCTGGTAAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

99

Amino Acids

11.41

Weight (kDa)

7.81

Isoelectric Point (pI)

23.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69500
fragaria_vesca	FvH4_4g31080 FvH4_4g31080
malus_domestica	MD13G1069300.v1.1 MD16G1069600.v1.1
prunus_persica	Prupe.1G277400_v2.0.a1
pyrus_communis	pycom13g06210 pycom13g06220
rosa_chinensis	RchiOBHm_Chr4g0439461
rosa_laevigata	RLG00000006269
rosa_multiflora	Rmu_sc0007276.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380380
rosa_rugosa	Rorug04G0318500
rosa_samantha	Rh4AG369800 Rh4BG381600 Rh4BG381700 Rh4CG396300 Rh4DG376200 Rh4DG376300
rosa_wichuraiana	Rw4G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	131, 181
AcsI	RAATTY	1 cut(s)	158
AjnI	CCWGG	3 cut(s)	57, 90, 285
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
AluBI	AGCT	2 cut(s)	182, 263
AluI	AGCT	2 cut(s)	182, 263
AlwI	GGATC	2 cut(s)	131, 181
AoxI	GGCC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	158
BciT130I	CCWGG	3 cut(s)	59, 92, 287
BglII	AGATCT	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	59, 92, 287
BmiI	GGNNCC	2 cut(s)	55, 63
BmrFI	CCNGG	3 cut(s)	59, 92, 287
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	57, 90
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
BseBI	CCWGG	3 cut(s)	59, 92, 287
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	57, 90
BseGI	GGATG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	127
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	67, 136, 173
BspANI	GGCC	1 cut(s)	95
BspDI	ATCGAT	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	55, 63
BspPI	GGATC	2 cut(s)	131, 181
BssECI	CCNNGG	2 cut(s)	57, 90
BssMI	GATC	3 cut(s)	67, 136, 173
Bst2UI	CCWGG	3 cut(s)	59, 92, 287
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	3 cut(s)	70, 139, 176
BstMBI	GATC	3 cut(s)	67, 136, 173
BstNI	CCWGG	3 cut(s)	59, 92, 287
BstSCI	CCNGG	3 cut(s)	57, 90, 285
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	127
CsiI	ACCWGGT	1 cut(s)	285
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	4 cut(s)	62, 95, 182, 263
CviKI_1	RGCY	4 cut(s)	62, 95, 182, 263
DpnI	GATC	3 cut(s)	69, 138, 175
DpnII	GATC	3 cut(s)	67, 136, 173
Eco147I	AGGCCT	1 cut(s)	95
EcoRII	CCWGG	3 cut(s)	57, 90, 285
FaeI	CATG	1 cut(s)	202
FaiI	YATR	8 cut(s)	23, 25, 113, 124, 145, 200, 209, 223
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 171, 203
FatI	CATG	1 cut(s)	198
FauNDI	CATATG	1 cut(s)	23
FokI	GGATG	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	3 cut(s)	10, 17, 129
Hpy188I	TCNGA	4 cut(s)	178, 237, 250, 277
Hpy188III	TCNNGA	2 cut(s)	14, 65
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	67, 136, 173
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	7 cut(s)	44, 71, 77, 78, 87, 104, 272
MabI	ACCWGGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	69, 138, 175
MboI	GATC	3 cut(s)	67, 136, 173
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	5 cut(s)	114, 158, 166, 231, 292
MlyI	GAGTC	2 cut(s)	4, 11
MseI	TTAA	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	59, 92, 287
MvaI	CCWGG	3 cut(s)	59, 92, 287
NdeI	CATATG	1 cut(s)	23
NdeII	GATC	3 cut(s)	67, 136, 173
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	55, 63
NmuCI	GTSAC	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	129
PleI	GAGTC	2 cut(s)	4, 11
PpsI	GAGTC	2 cut(s)	4, 11
Psp6I	CCWGG	3 cut(s)	57, 90, 285
PspGI	CCWGG	3 cut(s)	57, 90, 285
PspN4I	GGNNCC	2 cut(s)	55, 63
PsuI	RGATCY	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	164
Sau3AI	GATC	3 cut(s)	67, 136, 173
SchI	GAGTC	2 cut(s)	4, 11
ScrFI	CCNGG	3 cut(s)	59, 92, 287
SetI	ASST	4 cut(s)	33, 184, 265, 288
SexAI	ACCWGGT	1 cut(s)	285
Sse9I	AATT	5 cut(s)	114, 158, 166, 231, 292
SseBI	AGGCCT	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	57, 90, 285
TaqI	TCGA	2 cut(s)	99, 127
TasI	AATT	5 cut(s)	114, 158, 166, 231, 292
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	121, 215
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.