Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011009

Physical Location & Seq

Genomic Coordinates Forward (+)

4046722 .. 4047820

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGATCAAGAAAGTAACATTTTATTAGCTTTTTCTTCCCAAGATGGAGTTTTCATGGTACTCTGCATGGTTTTGTCGTGGATATTCATCCACAGATGGAGCCAGAGGAACAAAAAAGGCCCCAAAACATGGCCTCTCGTCGGAGCAGCGATCGAACAGTTCACCAACTACGACAGAATGCACGATTGGCTCGTCAAGTACCTCTCGGAGTCAAACTCCGTCGTCGTCCCAATGCCATTCACAACTTACACTTACATTGCAGATCCTGCGAATGTAGAACATGTCCTCAAGACCAACTTTGCAAACTACCCTAAGGGTGAAGTGTATCGTTCGTACATGGAAGTACTGCTCGGAGATGGGATCTTCAACGTGGATGGAGAGCTTTGGAGGAAACAGAGAAAGACTGCAAGCTTTGAATTTGCGTCCAAGAATTTGAGGGATTTCAGCACTGTGGTTTTCAGAGATTACAGTCTCAAGCTCCATTCGATTCTCAGCCGAGCGTCTTTTCAAGGCCAACAAGTTGATATGCAGGTGGAAACACCTTCGTTACAGCGTCCGCATTGTTGTCGTCTTGATAGAGATGGTTTTACTTCGTTGGACGGTATCAGAAATGAATATATGTTCTTTGTGCAGGAACTGCTGATGAGGATGACTTTGGACTCCATATGCAAGGTGGGATTTGGGGTGGAAATTGGAACTCTGGCTCCCAATCTGCCGGACAATCACTTTGCCAAGGCCTTTGACACTGCAAACATCATCGTGACGCTTCGATTTATCGATCCTCTGTGGAGAATAAAGAGATACTTGAATGTGGGATCAGAAGCTTTACTTGACAAGAGCATTAAAACCATTGATGATTTTACATACTCTGTTATTAGAAGAAGGAAAGCAGAGATCAAAGAAACTCAGCAGGGTTCTGAAAACAACAAGGTAACACAGAACGTTACTTTTTGTTTGCAGGATGAAGAAAACAGATTCATAATCCGATTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

333

Amino Acids

38.56

Weight (kDa)

7.01

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69500
fragaria_vesca	FvH4_4g31080 FvH4_4g31080
malus_domestica	MD13G1069300.v1.1 MD16G1069600.v1.1
prunus_persica	Prupe.1G277400_v2.0.a1
pyrus_communis	pycom13g06210 pycom13g06220
rosa_chinensis	RchiOBHm_Chr4g0439461
rosa_laevigata	RLG00000006269
rosa_multiflora	Rmu_sc0007276.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380380
rosa_rugosa	Rorug04G0318500
rosa_samantha	Rh4AG369800 Rh4BG381600 Rh4BG381700 Rh4CG396300 Rh4DG376200 Rh4DG376300
rosa_wichuraiana	Rw4G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	132
AciI	CCGC	1 cut(s)	560
AclI	AACGTT	1 cut(s)	945
AclWI	GGATC	4 cut(s)	260, 371, 776, 826
AcsI	RAATTY	2 cut(s)	419, 433
AfaI	GTAC	4 cut(s)	63, 203, 338, 348
AfiI	CCNNNNNNNGG	2 cut(s)	132, 143
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	370, 419, 512, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AloI	GAACNNNNNNTCC	2 cut(s)	691, 723
AluBI	AGCT	5 cut(s)	32, 385, 414, 481, 827
AluI	AGCT	5 cut(s)	32, 385, 414, 481, 827
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	4 cut(s)	260, 371, 776, 826
AlwNI	CAGNNNCTG	2 cut(s)	269, 640
AoxI	GGCC	4 cut(s)	121, 134, 514, 738
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	2 cut(s)	419, 433
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	157, 332
AxyI	CCTNAGG	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	5 cut(s)	41, 93, 353, 371, 578
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BcoDI	GTCTC	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BmcAI	AGTACT	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	104, 124, 708
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuEI	CTTGAG	2 cut(s)	275, 461
Bsa29I	ATCGAT	1 cut(s)	780
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 143
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	4 cut(s)	90, 382, 657, 970
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	132, 143
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	508, 923
BseXI	GCAGC	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	653
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	123, 136, 516, 740
BshVI	ATCGAT	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	719
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	132, 143
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	4 cut(s)	123, 136, 516, 740
Bsp143I	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	4 cut(s)	123, 136, 516, 740
BspCNI	CTCAG	2 cut(s)	507, 922
BspDI	ATCGAT	1 cut(s)	780
BspLI	GGNNCC	3 cut(s)	104, 124, 708
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	4 cut(s)	260, 371, 776, 826
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
BssT1I	CCWWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	162, 454, 473, 605
BstAPI	GCANNNNNTGC	2 cut(s)	269, 640
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	315, 494, 909
BstF5I	GGATG	4 cut(s)	90, 382, 657, 970
BstKTI	GATC	7 cut(s)	10, 156, 268, 366, 784, 821, 900
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 269, 640
BstNSI	RCATGY	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	265, 363
BstYI	RGATCY	2 cut(s)	265, 363
Bsu15I	ATCGAT	1 cut(s)	780
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	4 cut(s)	123, 136, 516, 740
BsuTUI	ATCGAT	1 cut(s)	780
BtsCI	GGATG	4 cut(s)	90, 382, 657, 970
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	2 cut(s)	450, 747
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	412
CaiI	CAGNNNCTG	2 cut(s)	269, 640
Cfr13I	GGNCC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	780
CseI	GACGC	4 cut(s)	414, 492, 545, 775
Csp6I	GTAC	4 cut(s)	62, 202, 337, 347
CviAII	CATG	5 cut(s)	58, 70, 132, 284, 340
CviQI	GTAC	4 cut(s)	62, 202, 337, 347
DdeI	CTNAG	3 cut(s)	315, 494, 909
DpnI	GATC	7 cut(s)	9, 155, 267, 365, 783, 820, 899
DpnII	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
Eco130I	CCWWGG	1 cut(s)	735
Eco147I	AGGCCT	1 cut(s)	740
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	5 cut(s)	61, 73, 135, 287, 343
FalI	AAGNNNNNCTT	6 cut(s)	284, 316, 791, 823, 816, 848
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	5 cut(s)	57, 69, 131, 283, 339
FauNDI	CATATG	1 cut(s)	668
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	4 cut(s)	77, 389, 664, 977
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	123, 136, 516, 740
HapII	CCGG	1 cut(s)	719
HgaI	GACGC	4 cut(s)	414, 492, 545, 775
Hin1II	CATG	5 cut(s)	61, 73, 135, 287, 343
HindIII	AAGCTT	2 cut(s)	412, 825
HinfI	GANTC	4 cut(s)	212, 490, 662, 978
HpaII	CCGG	1 cut(s)	719
HphI	GGTGA	2 cut(s)	157, 332
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	8 cut(s)	146, 211, 356, 464, 611, 823, 922, 989
Hpy188III	TCNNGA	4 cut(s)	11, 292, 575, 763
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	3 cut(s)	146, 227, 230
HpyAV	CCTTC	2 cut(s)	555, 879
HpyCH4III	ACNGT	4 cut(s)	162, 454, 473, 605
HpyCH4IV	ACGT	2 cut(s)	372, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 269, 640
HpyF3I	CTNAG	3 cut(s)	315, 494, 909
HpySE526I	ACGT	2 cut(s)	372, 945
Hsp92II	CATG	5 cut(s)	61, 73, 135, 287, 343
Kzo9I	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
LmnI	GCTCC	4 cut(s)	102, 146, 486, 712
LpnPI	CCDG	8 cut(s)	119, 282, 518, 620, 689, 732, 899, 947
Lsp1109I	GCAGC	1 cut(s)	161
MaeII	ACGT	2 cut(s)	372, 945
MaeIII	GTNAC	5 cut(s)	17, 549, 763, 934, 946
MalI	GATC	7 cut(s)	9, 155, 267, 365, 783, 820, 899
MboI	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
MboII	GAAGA	5 cut(s)	17, 30, 358, 894, 980
MflI	RGATCY	2 cut(s)	265, 363
MluCI	AATT	3 cut(s)	419, 433, 693
MlyI	GAGTC	2 cut(s)	221, 656
MmeI	TCCRAC	2 cut(s)	124, 579
MnlI	CCTC	8 cut(s)	102, 147, 215, 299, 384, 432, 642, 795
MseI	TTAA	2 cut(s)	846, 992
MslI	CAYNNNNRTG	1 cut(s)	761
MspI	CCGG	1 cut(s)	719
Mva1269I	GAATGC	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	190, 269, 640
NdeI	CATATG	1 cut(s)	668
NdeII	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
NlaIII	CATG	5 cut(s)	61, 73, 135, 287, 343
NlaIV	GGNNCC	3 cut(s)	104, 124, 708
NmeAIII	GCCGAG	1 cut(s)	524
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	740
PciI	ACATGT	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	490, 978
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	151
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	2 cut(s)	220, 656
PpsI	GAGTC	2 cut(s)	220, 656
PscI	ACATGT	1 cut(s)	283
Psp1406I	AACGTT	1 cut(s)	945
PspN4I	GGNNCC	3 cut(s)	104, 124, 708
PspPI	GGNCC	1 cut(s)	122
PstNI	CAGNNNCTG	2 cut(s)	269, 640
PsuI	RGATCY	2 cut(s)	265, 363
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	4 cut(s)	63, 203, 338, 348
RsaNI	GTAC	4 cut(s)	62, 202, 337, 347
RseI	CAYNNNNRTG	1 cut(s)	761
SaqAI	TTAA	2 cut(s)	846, 992
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	7 cut(s)	7, 153, 265, 363, 781, 818, 897
Sau96I	GGNCC	1 cut(s)	122
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	2 cut(s)	221, 656
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	2 cut(s)	290, 476
SmoI	CTYRAG	2 cut(s)	290, 476
Sse9I	AATT	3 cut(s)	419, 433, 693
SseBI	AGGCCT	1 cut(s)	740
SsiI	CCGC	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	740
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	162, 454, 473, 605
TaiI	ACGT	2 cut(s)	375, 948
TaqI	TCGA	4 cut(s)	156, 488, 772, 780
TasI	AATT	3 cut(s)	419, 433, 693
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	490, 978
Tru1I	TTAA	2 cut(s)	846, 992
Tru9I	TTAA	2 cut(s)	846, 992
TscAI	CASTG	2 cut(s)	457, 754
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	5 cut(s)	46, 79, 630, 970, 981
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	2 cut(s)	457, 754
Van91I	CCANNNNNTGG	1 cut(s)	132
XapI	RAATTY	2 cut(s)	419, 433
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.