MD16G1167900.v1.1

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012287
Physical Location & Seq
Forward (+)
13975366 .. 13981321
5956 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1167900.v1.1.491

Sequence Viewer

Length: 4026 bp
ATGGAGGAAACCATAACCCGAATAGTCACGGAGCTCGAAGAACTCCGCCGCTCCGACAACCCCTCCGACCCCCAAATCCAACCCATATCCGATTCCACCCTCTCCGACCTCCAAACCCTCTTAGACATTGCCCTCTCCGACGATGACCCCGAACTCATGGACCGCCTCTACCACGAGCTCTCTTCCAAGTCCATCTCTCTGTCCAATCTCGTCCGTCCGATCACCTCCACCATGGATTTGGGCCGTGCCCATCTCGCCCTATCGGCTTCCAGTGTCTACCTCTCTCTTCTCCTTTCTCCCAATTCCCCCGTCTGCACTCTCTTCACTCCCATGGCCTTTCTCTCTCTCCTCCAGTCAATTCGCCGGTCGCTCAAGCACCGTCCTGCCGGTCAATCGAGCCATGGTTCCCACGTTGCCGGTAATAAGAAGAGAAAGGGCCGGTCCATAAATCAGGGTTCGAAGAATTGTGCCAAGAATGCTATTGATGAGGATTGTGAAGGCGAAGAGAGGGAATTCGATATTCGGGTCTTGTTTACTGTTCTTGAAAGGTTAGAACTTGTAATTGGTTTGATTCATTTGGACCGGTTTCCAGATAGTTTGAAGTCTCTGGTTCAAACTGTGGCTGAAATTCCAGTAATGGGGCTCGAAGTCTGCGGTAATTCAGGTAGCTATAACAAACTAACCGATTTGTGCTCACGGATTTTGCTTAAAGTGTTCATACCTGAGCATGGCGACCAAGCTAACATTGCAGCCGAGGTGTTGAAGTCATTGTCTCCAATGATTCTTCAGTATAAGTTGCAGGTTCGGTTTTTTGCATTGGGGTTTGTGACGAATCAGATGATGAGTGTGGCTAAAACACTTGAAGGCGTCAAGAAAGCAGTAGTGAATTTTCCAAGGTATTTGGTACAGAAGTCGCCGGAGAAGTCAGAGCCTCGGGCTTTGGCTGTGGAGTCTATAATGGAGGTTGTAAGAGTTATGGAGTTTGAGGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACTCAAGGTAAGGCAAGCTTGAGGCTTTTGGCGGTTGACCTTATTCTGGCGCTAGTGACATCATTGAGAGATACATTGGGATTGAATTCGGAAATTGAAGTGATTGATTCATTGGGGTTCAAATGCTTGGAGGCTTTGATTCAACGCTGTTCGGATTCAACCGCTGGAATTCGAGGTCGTGCTTTATCAAACTTGTCACATCTCGTGGGCTTGTTGTCAAGCGATGAGAGGGGCCGTGATGTGCTGAAACAAGTTATGGGGCTTGGCAATGCAAGTGACAAGAGGCCTGACAGTTGGGTAAATGAAATTTTGATGAAGAGGTGCATGGATGAGAAGGCAGGTGTGAGGAAGGCTGCACTTCTTTTGATTACCAAGTTGATAGCCATTCTAGGCAGTGGCTTTGATGGAGCCTTGCTCCAGACAATGGGAATGGCTTGTTCTGATCCACTTGTTAGCATACGCAAGACGGCAGTTTCAGCTCTTTCAGTGGCCTTTAGAACATTCCTGGATGAAAGGGTGGCAACTGAGTGGCTACATTCTGTTCCACGTTTAATAGCTGATAATGAGTCTAGCATTCAAGAAGAATGTGAGAACTTGTTTCTAGAGCTGGTATTAGAACGGGTATCTACTGTTGATTCTGTTAGTTCACTTCACGATGAATCTGTAGCAAAAGACACGGAAATGGATGTTGATTTGGTGTTTCCTGAAGGTGTTTTGTGTATATTGAAAGAGATTTGCAATGGAGAGGTGACACCTTGGGTGAAGAAAATTTGCACAAACCTGGGAAAGAAGAAACTGATGAAGCCCAAATTTGCTATTTCACTTCAAAATATCATACGAACATCTGAGTCTCTCTGGCTCAGTCAATCCTTGCCAATAGAGAAATGGACAGCCCCACCTGGTTCTTGGTTTCTTCTATCAGAGGTGTCAGCATACCTTGCAAAAGCAGTGGACTGGGAGTTTCTTAATCATCATTGGCAGCTCTTTGACAAGTATGGAGTGGGAGGAGAGGTTCAAAGGCCTACAGCGCAAGGATATGCACATGAAGAGGAAGAGGGTATTGATTCCAATTCCGTTGCTTGGGCGGGGGATCGTGTTTTTCTCCTGCAGACAATTTCTAATGTTTCTGTTGAGCTGCCCTCTGAACTTGCAGCAGACTTAGCTCACAACATGCTTAAAAGAATTCATGAGTTCAACATGCATTCAACAGAGGTTAATGCTCATGTAAAAGCACTTAGAACATTGTGCAAGCGGAAGGCTTCAAACCCAGTGGAGGCTGATGCTCTTGTTGAGAAATGGGTGGACAGGCTCATCACAGAAGCTTCTACGATTTTAGAGAAGTATATTTCGGGTGATTCAGATGCAGTCGGAAAAGCTGACTTCTTTACGCCACCTAGAAGTGAGACTAGAAAGGGCAAGAGAGTATTGGCCATGTCCAGGTCATTGTCAAAAGCAGTCACAGCAGTTTACACCATTGGGTCCGTGGTTATCATTTACCCATCTGCTGATATGACCACCGTCATTCCACTACTGTACACTATCATCACTTCCGGAAATCCTGATCCAAAAGTTAATAAATTAACCGGGCCTGAAGTCTCTCTAAAGCAGACAGCCCCTTCGTTATACATTCAAGCATGGCTTACTTTGGGGAAGATCTGCCTTGCAGATGGAAAAATTGCAAAGAGTTATATTCCGCTGTTTGTGCAGGAACTTCAAAAGAGTGATTGTGCTGCACTCCGCAACAACCTGATAGTGGTGATGGCAGATTTTTGTGTTCGCTACACTGCTTTAGTTGATAGTTATATACCAAAGATCACAAAGTGTCTCCGTGATCCATGTGAACTTGTAAGAAGGCAGACATTTATACTTCTCTCGAGATTATTGCAGAGGGATTACGTGAAGTGGAGAGGTGTTATGTTCCTCAGATTTCTCTTGTCAATTGTTGATGAGTCAGAAAAGATAAGGCAGCTTTCCAGTTTTCTGTTTAACAATATTCTGAAAGTGAAGGCACCTCTTCTAGGATATAACAGTTTCGTAGAAGCAATTTTTGTTCTGAATGATTGCCATGCCCACAATGGACACAGTAATGCTCAGGTATCACGAGCAGAGGGCCGACTTTTTTCCATCAGGGGCAATGATGAAAATTCGAGGTCTAAAAGAATGCAGATCTATGTTACTTTGCTAAAACAAATGGCTCCAGAGCACTTATTGGCTACCTTTGCAAAGTTATGCGCAGAGATTCTCGCTGCAGCATCTGACGGTATGCTCAATATAGATGATGTTACCGGACAATCTGTTCTGAAGGATGCTTTCCAAATTCTTGCCTGCAAAGAGATCCGAATCCCATCCAACCGCGGATCACCAACTGACACTGGAGAAATGGACGAAGATGGTGGTGATAACAGCGGGGCATCTGCTAAGGGAAGGATAACTCAAGCAGTCAAAAAGGGGCTCATCCAAAACACAGTACCCATCTTTATAGAGCTGAAACGGCTACTGGAAAGCAAAAACAGCCCCCTTATCGGCTCTCTCATGGAATGCCTCCGAATCATTCTCAAGGATTACAAAAATGAGATCGAAGACATATTAGTCGCTGACAAGCAGCTCCAGAAGGAGCTCGTATATGATATGCAGAAGTATGAAGCATCAAAGGCCAAAACAACAGCTGCAGAGGCTGTTGCCATCAGCAAAAAAGCAATCAGCTTCAACTCCCCCGGCATGTCTAAGATTGCTAGCTTGAGACATGCACAAAACAAGTTCAGCAGCAAAATGCAAGGTGACACACAACTGGCTTCAGCAATGGCAGATGCTGCAGCTGAAGCCACCGCACGGTCAGTGCTGAAGGAAGTGAACAGGGGGCTGCAGTCGCCCCCTCTTAGCGCGCTGAGCGTGCCTAAACTCAAGACATGCGAAGGAGGACGCAGCGCTCGCAGTGACCGGCCCTTAGATGTGTTAGAATCTGTGAGGAGAAGGCAGAATTTTGACCTTGATGAAGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

1342

Amino Acids

148.42

Weight (kDa)

6.91

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd1 PF12717 920 - 1094 2.1e-18 non-SMC mitotic condensation complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15890 AT4G15890
fragaria_vesca FvH4_4g18310
malus_domestica MD16G1167900.v1.1
prunus_persica Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1
pyrus_communis pycom16g14150
rosa_chinensis RchiOBHm_Chr4g0422791
rosa_laevigata RLG00000007605
rosa_multiflora Rmu_sc0000830.1_g000049
rosa_roxburghii Rroxscaffold_5G00364640
rosa_rugosa Rorug04G0181400
rosa_samantha Rh4AG241800 Rh4BG245200 Rh4CG255700 Rh4DG240400
rosa_wichuraiana Rw4G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1352
AasI GACNNNNNNGTC 1 cut(s) 3611
Acc16I TGCGCA 1 cut(s) 3256
Acc36I ACCTGC 2 cut(s) 790, 1352
AccB1I GGYRCC 1 cut(s) 3031
AccB7I CCANNNNNTGG 1 cut(s) 1447
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 276
AccII CGCG 2 cut(s) 3378, 3905
AccIII TCCGGA 1 cut(s) 2573
AclWI GGATC 7 cut(s) 996, 1460, 2121, 2579, 2849, 3352, 3388
AcoI YGGCCR 1 cut(s) 2451
AcuI CTGAAG 7 cut(s) 770, 1749, 2634, 3344, 3801, 3861, 3884
AcyI GRCGYC 1 cut(s) 867
AdeI CACNNNGTG 1 cut(s) 2844
AfaI GTAC 3 cut(s) 906, 2558, 3492
AfeI AGCGCT 1 cut(s) 3949
AgeI ACCGGT 1 cut(s) 582
AjnI CCWGG 4 cut(s) 1527, 1803, 1921, 2459
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AloI GAACNNNNNNTCC 4 cut(s) 2019, 2051, 3303, 3335
Alw21I GWGCWC 5 cut(s) 36, 180, 695, 3228, 3642
Alw26I GTCTC 7 cut(s) 609, 777, 1878, 2420, 2623, 2852, 3757
AlwI GGATC 7 cut(s) 996, 1460, 2121, 2579, 2849, 3352, 3388
AlwNI CAGNNNCTG 3 cut(s) 3278, 3698, 3833
Ama87I CYCGRG 2 cut(s) 933, 2896
Aor13HI TCCGGA 1 cut(s) 2573
Aor51HI AGCGCT 1 cut(s) 3949
ArsI GACNNNNNNTTYG 2 cut(s) 2623, 2655
AsiGI ACCGGT 1 cut(s) 582
AspLEI GCGC 6 cut(s) 1075, 2053, 3257, 3905, 3907, 3950
AsuC2I CCSGG 2 cut(s) 2608, 3738
AsuHPI GGTGA 8 cut(s) 214, 1783, 1795, 2387, 2791, 3375, 3431, 3812
AsuII TTCGAA 1 cut(s) 458
AsuNHI GCTAGC 1 cut(s) 3755
AvaI CYCGRG 2 cut(s) 933, 2896
AvaII GGWCC 4 cut(s) 160, 441, 580, 2502
BaeGI GKGCMC 1 cut(s) 250
BaeI ACNNNNGTAYC 2 cut(s) 896, 929
BalI TGGCCA 1 cut(s) 2453
BanI GGYRCC 1 cut(s) 3031
BanII GRGCYC 5 cut(s) 36, 180, 645, 3477, 3642
BauI CACGAG 3 cut(s) 173, 1226, 3123
BbsI GAAGAC 1 cut(s) 3609
Bbv12I GWGCWC 5 cut(s) 36, 180, 695, 3228, 3642
BceAI ACGGC 4 cut(s) 228, 1242, 1506, 3530
BcgI CGANNNNNNTGC 2 cut(s) 2887, 2921
BciT130I CCWGG 4 cut(s) 1529, 1805, 1923, 2461
BcnI CCSGG 2 cut(s) 2608, 3738
BcoDI GTCTC 7 cut(s) 609, 777, 1878, 2420, 2623, 2852, 3757
BfaI CTAG 8 cut(s) 1076, 1412, 1593, 1625, 2418, 2430, 3041, 3756
BfmI CTRYAG 7 cut(s) 1686, 2046, 2129, 3270, 3690, 3834, 3884
BfoI RGCGCY 2 cut(s) 1076, 3951
BfuAI ACCTGC 2 cut(s) 790, 1352
BglI GCCNNNNNGGC 1 cut(s) 263
BglII AGATCT 2 cut(s) 2676, 3189
BlpI GCTNAGC 1 cut(s) 3908
Bme1390I CCNGG 6 cut(s) 1529, 1805, 1923, 2461, 2608, 3738
Bme18I GGWCC 4 cut(s) 160, 441, 580, 2502
BmeT110I CYCGRG 2 cut(s) 933, 2896
BmiI GGNNCC 6 cut(s) 406, 1256, 1432, 2503, 3033, 3219
BmrFI CCNGG 6 cut(s) 1529, 1805, 1923, 2461, 2608, 3738
BmrI ACTGGG 2 cut(s) 1987, 2285
BmsI GCATC 7 cut(s) 2293, 2374, 3284, 3319, 3443, 3677, 3820
BmtI GCTAGC 1 cut(s) 3759
BmuI ACTGGG 2 cut(s) 1987, 2285
BoxI GACNNNNGTC 1 cut(s) 2540
BpiI GAAGAC 1 cut(s) 3609
BplI GAGNNNNNCTC 4 cut(s) 1422, 1454, 2147, 2179
BpmI CTGGAG 5 cut(s) 335, 1424, 3204, 3417, 3614
Bpu10I CCTNAGC 3 cut(s) 723, 3114, 3441
Bpu1102I GCTNAGC 1 cut(s) 3908
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 7 cut(s) 356, 1011, 1063, 3441, 3563, 3781, 3908
BpuMI CCSGG 2 cut(s) 2608, 3738
BsaAI YACGTR 1 cut(s) 2920
BsaBI GATNNNNATC 1 cut(s) 3362
BsaHI GRCGYC 1 cut(s) 867
BsaWI WCCGGW 3 cut(s) 582, 2573, 3308
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 2019, 2049
Bse118I RCCGGY 6 cut(s) 363, 386, 416, 438, 582, 3960
Bse1I ACTGG 9 cut(s) 270, 352, 632, 1982, 2291, 2997, 3400, 3525, 3816
Bse3DI GCAATG 6 cut(s) 126, 744, 1297, 1768, 3163, 3828
Bse8I GATNNNNATC 1 cut(s) 3362
BseAI TCCGGA 1 cut(s) 2573
BseBI CCWGG 4 cut(s) 1529, 1805, 1923, 2461
BseGI GGATG 6 cut(s) 1357, 1537, 1714, 3334, 3368, 3477
BseJI GATNNNNATC 1 cut(s) 3362
BseMI GCAATG 6 cut(s) 126, 744, 1297, 1768, 3163, 3828
BseMII CTCAG 7 cut(s) 714, 1539, 1860, 1897, 2959, 3128, 3899
BseNI ACTGG 9 cut(s) 270, 352, 632, 1982, 2291, 2997, 3400, 3525, 3816
BsePI GCGCGC 1 cut(s) 3903
BseRI GAGGAG 3 cut(s) 338, 2043, 4003
BseSI GKGCMC 1 cut(s) 250
BsgI GTGCAG 4 cut(s) 298, 1362, 2739, 2747
Bsh1236I CGCG 2 cut(s) 3378, 3905
Bsh1285I CGRYCG 1 cut(s) 368
BshNI GGYRCC 1 cut(s) 3031
BshTI ACCGGT 1 cut(s) 582
BsiEI CGRYCG 1 cut(s) 368
BsiHKAI GWGCWC 5 cut(s) 36, 180, 695, 3228, 3642
BsiHKCI CYCGRG 2 cut(s) 933, 2896
BsmAI GTCTC 7 cut(s) 609, 777, 1878, 2420, 2623, 2852, 3757
BsmI GAATGC 5 cut(s) 481, 1596, 2224, 3189, 3566
BsoBI CYCGRG 2 cut(s) 933, 2896
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 8 cut(s) 36, 180, 250, 645, 695, 3228, 3477, 3642
Bsp13I TCCGGA 1 cut(s) 2573
Bsp1407I TGTACA 1 cut(s) 2556
Bsp1720I GCTNAGC 1 cut(s) 3908
Bsp19I CCATGG 3 cut(s) 231, 330, 400
BspCNI CTCAG 7 cut(s) 715, 1540, 1861, 1896, 2958, 3127, 3900
BspEI TCCGGA 1 cut(s) 2573
BspFNI CGCG 2 cut(s) 3378, 3905
BspHI TCATGA 1 cut(s) 2209
BspLI GGNNCC 6 cut(s) 406, 1256, 1432, 2503, 3033, 3219
BspMAI CTGCAG 5 cut(s) 2133, 3274, 3694, 3838, 3888
BspMI ACCTGC 2 cut(s) 790, 1352
BspOI GCTAGC 1 cut(s) 3759
BspPI GGATC 7 cut(s) 996, 1460, 2121, 2579, 2849, 3352, 3388
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 3031
BsrBI CCGCTC 1 cut(s) 51
BsrDI GCAATG 6 cut(s) 126, 744, 1297, 1768, 3163, 3828
BsrFI RCCGGY 6 cut(s) 363, 386, 416, 438, 582, 3960
BsrGI TGTACA 1 cut(s) 2556
BsrI ACTGG 9 cut(s) 270, 352, 632, 1982, 2291, 2997, 3400, 3525, 3816
BssAI RCCGGY 6 cut(s) 363, 386, 416, 438, 582, 3960
BssHII GCGCGC 1 cut(s) 3903
BssNI GRCGYC 1 cut(s) 867
BssSI CACGAG 3 cut(s) 173, 1226, 3123
BssT1I CCWWGG 5 cut(s) 231, 330, 400, 893, 1778
Bst2BI CACGAG 3 cut(s) 173, 1226, 3123
Bst2UI CCWGG 4 cut(s) 1529, 1805, 1923, 2461
Bst6I CTCTTC 9 cut(s) 187, 291, 326, 422, 498, 1334, 2064, 2070, 3042
BstACI GRCGYC 1 cut(s) 867
BstAPI GCANNNNNTGC 2 cut(s) 1961, 3833
BstAUI TGTACA 1 cut(s) 2556
BstBAI YACGTR 1 cut(s) 2920
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 7 cut(s) 1039, 2273, 3349, 3757, 3905, 3914, 3952
BstDSI CCRYGG 5 cut(s) 231, 330, 400, 2505, 3376
BstENI CCTNNNNNAGG 1 cut(s) 3039
BstF5I GGATG 6 cut(s) 1357, 1537, 1714, 3334, 3368, 3477
BstFNI CGCG 2 cut(s) 3378, 3905
BstH2I RGCGCY 2 cut(s) 1076, 3951
BstHHI GCGC 6 cut(s) 1075, 2053, 3257, 3905, 3907, 3950
BstMAI GTCTC 7 cut(s) 609, 777, 1878, 2420, 2623, 2852, 3757
BstMCI CGRYCG 1 cut(s) 368
BstNI CCWGG 4 cut(s) 1529, 1805, 1923, 2461
BstNSI RCATGY 5 cut(s) 2197, 2224, 3745, 3770, 3933
BstPAI GACNNNNGTC 1 cut(s) 2540
BstSCI CCNGG 6 cut(s) 1527, 1803, 1921, 2459, 2606, 3736
BstSFI CTRYAG 7 cut(s) 1686, 2046, 2129, 3270, 3690, 3834, 3884
BstSLI GKGCMC 1 cut(s) 250
BstUI CGCG 2 cut(s) 3378, 3905
BstV2I GAAGAC 1 cut(s) 3609
BstX2I RGATCY 3 cut(s) 2676, 3189, 3357
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 3 cut(s) 2676, 3189, 3357
BtgI CCRYGG 5 cut(s) 231, 330, 400, 2505, 3376
BtgZI GCGATG 1 cut(s) 1260
BtsCI GGATG 6 cut(s) 1357, 1537, 1714, 3334, 3368, 3477
BtsI GCAGTG 4 cut(s) 1423, 1977, 2805, 3961
BtsIMutI CAGTG 9 cut(s) 277, 1423, 1515, 1977, 2298, 2805, 3393, 3864, 3961
BveI ACCTGC 2 cut(s) 790, 1352
Cac8I GCNNGC 7 cut(s) 1039, 2273, 3349, 3757, 3905, 3914, 3952
CaiI CAGNNNCTG 3 cut(s) 3278, 3698, 3833
CciI TCATGA 1 cut(s) 2209
CfoI GCGC 6 cut(s) 1075, 2053, 3257, 3905, 3907, 3950
Cfr10I RCCGGY 6 cut(s) 363, 386, 416, 438, 582, 3960
Cfr42I CCGCGG 1 cut(s) 3379
CseI GACGC 2 cut(s) 856, 3951
CsiI ACCWGGT 1 cut(s) 1921
Csp6I GTAC 3 cut(s) 905, 2557, 3491
CspAI ACCGGT 1 cut(s) 582
CspCI CAANNNNNGTGG 4 cut(s) 1953, 1988, 2274, 2309
CviQI GTAC 3 cut(s) 905, 2557, 3491
DraIII CACNNNGTG 1 cut(s) 2844
DrdI GACNNNNNNGTC 1 cut(s) 3611
DseDI GACNNNNNNGTC 1 cut(s) 3611
EaeI YGGCCR 1 cut(s) 2451
Eam1104I CTCTTC 9 cut(s) 187, 291, 326, 422, 498, 1334, 2064, 2070, 3042
EarI CTCTTC 9 cut(s) 187, 291, 326, 422, 498, 1334, 2064, 2070, 3042
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 3 cut(s) 34, 178, 3640
Eco130I CCWWGG 5 cut(s) 231, 330, 400, 893, 1778
Eco147I AGGCCT 2 cut(s) 1309, 2044
Eco24I GRGCYC 5 cut(s) 36, 180, 645, 3477, 3642
Eco47I GGWCC 4 cut(s) 160, 441, 580, 2502
Eco47III AGCGCT 1 cut(s) 3949
Eco53kI GAGCTC 3 cut(s) 34, 178, 3640
Eco57I CTGAAG 7 cut(s) 770, 1749, 2634, 3344, 3801, 3861, 3884
Eco88I CYCGRG 2 cut(s) 933, 2896
EcoICRI GAGCTC 3 cut(s) 34, 178, 3640
EcoNI CCTNNNNNAGG 1 cut(s) 3039
EcoRI GAATTC 4 cut(s) 512, 1108, 1191, 2205
EcoRII CCWGG 4 cut(s) 1527, 1803, 1921, 2459
EcoT14I CCWWGG 5 cut(s) 231, 330, 400, 893, 1778
EcoT22I ATGCAT 1 cut(s) 2226
EcoT38I GRGCYC 5 cut(s) 36, 180, 645, 3477, 3642
ErhI CCWWGG 5 cut(s) 231, 330, 400, 893, 1778
FalI AAGNNNNNCTT 4 cut(s) 1025, 1057, 2646, 2678
FauI CCCGC 2 cut(s) 2101, 3422
FblI GTMKAC 1 cut(s) 276
FokI GGATG 6 cut(s) 1364, 1544, 1721, 3341, 3355, 3464
FriOI GRGCYC 5 cut(s) 36, 180, 645, 3477, 3642
FspBI CTAG 8 cut(s) 1076, 1412, 1593, 1625, 2418, 2430, 3041, 3756
FspI TGCGCA 1 cut(s) 3256
GlaI GCGC 6 cut(s) 1074, 2052, 3256, 3904, 3906, 3949
GsuI CTGGAG 5 cut(s) 335, 1424, 3204, 3417, 3614
HaeII RGCGCY 2 cut(s) 1076, 3951
HgaI GACGC 2 cut(s) 856, 3951
HhaI GCGC 6 cut(s) 1075, 2053, 3257, 3905, 3907, 3950
Hin1I GRCGYC 1 cut(s) 867
Hin6I GCGC 6 cut(s) 1073, 2051, 3255, 3903, 3905, 3948
HinP1I GCGC 6 cut(s) 1073, 2051, 3255, 3903, 3905, 3948
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HindIII AAGCTT 2 cut(s) 1039, 2343
HphI GGTGA 8 cut(s) 214, 1783, 1795, 2387, 2791, 3375, 3431, 3812
Hpy99I CGWCG 1 cut(s) 143
HpyCH4IV ACGT 3 cut(s) 411, 1570, 2919
HpySE526I ACGT 3 cut(s) 411, 1570, 2919
Hsp92I GRCGYC 1 cut(s) 867
HspAI GCGC 6 cut(s) 1073, 2051, 3255, 3903, 3905, 3948
Kpn2I TCCGGA 1 cut(s) 2573
KspI CCGCGG 1 cut(s) 3379
LmnI GCTCC 7 cut(s) 31, 56, 1430, 1443, 3223, 3633, 3637
LweI GCATC 7 cut(s) 2293, 2374, 3284, 3319, 3443, 3677, 3820
MabI ACCWGGT 1 cut(s) 1921
MaeI CTAG 8 cut(s) 1076, 1412, 1593, 1625, 2418, 2430, 3041, 3756
MaeII ACGT 3 cut(s) 411, 1570, 2919
MbiI CCGCTC 1 cut(s) 51
MfeI CAATTG 1 cut(s) 2961
MflI RGATCY 3 cut(s) 2676, 3189, 3357
MhlI GDGCHC 8 cut(s) 36, 180, 250, 645, 695, 3228, 3477, 3642
MlsI TGGCCA 1 cut(s) 2453
MluNI TGGCCA 1 cut(s) 2453
MlyI GAGTC 5 cut(s) 959, 1018, 1598, 1880, 2981
MmeI TCCRAC 7 cut(s) 78, 90, 103, 129, 162, 2371, 3396
Mox20I TGGCCA 1 cut(s) 2453
Mph1103I ATGCAT 1 cut(s) 2226
MroI TCCGGA 1 cut(s) 2573
MscI TGGCCA 1 cut(s) 2453
MseI TTAA 8 cut(s) 708, 1574, 1989, 2199, 2238, 2595, 2603, 3009
MslI CAYNNNNRTG 3 cut(s) 329, 1703, 3108
Msp20I TGGCCA 1 cut(s) 2453
MspA1I CMGCKG 6 cut(s) 1187, 2719, 3378, 3429, 3689, 3839
MspR9I CCNGG 6 cut(s) 1529, 1805, 1923, 2461, 2608, 3738
MunI CAATTG 1 cut(s) 2961
Mva1269I GAATGC 5 cut(s) 481, 1596, 2224, 3189, 3566
MvaI CCWGG 4 cut(s) 1529, 1805, 1923, 2461
MvnI CGCG 2 cut(s) 3378, 3905
NciI CCSGG 2 cut(s) 2608, 3738
NcoI CCATGG 3 cut(s) 231, 330, 400
NheI GCTAGC 1 cut(s) 3755
NlaIV GGNNCC 6 cut(s) 406, 1256, 1432, 2503, 3033, 3219
NmeAIII GCCGAG 1 cut(s) 778
NmuCI GTSAC 9 cut(s) 25, 826, 1078, 1218, 1298, 1771, 2479, 3800, 3956
NsbI TGCGCA 1 cut(s) 3256
NsiI ATGCAT 1 cut(s) 2226
NspI RCATGY 5 cut(s) 2197, 2224, 3745, 3770, 3933
NspV TTCGAA 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 2896
PagI TCATGA 1 cut(s) 2209
PaqCI CACCTGC 1 cut(s) 1352
PauI GCGCGC 1 cut(s) 3903
PceI AGGCCT 2 cut(s) 1309, 2044
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 5 cut(s) 481, 1596, 2224, 3189, 3566
PflMI CCANNNNNTGG 1 cut(s) 1447
PfoI TCCNGGA 1 cut(s) 1527
PinAI ACCGGT 1 cut(s) 582
PleI GAGTC 5 cut(s) 958, 1018, 1597, 1879, 2980
PpsI GAGTC 5 cut(s) 958, 1018, 1597, 1879, 2980
Ppu21I YACGTR 1 cut(s) 2920
PshAI GACNNNNGTC 1 cut(s) 2540
Psp124BI GAGCTC 3 cut(s) 36, 180, 3642
Psp6I CCWGG 4 cut(s) 1527, 1803, 1921, 2459
PspGI CCWGG 4 cut(s) 1527, 1803, 1921, 2459
PspN4I GGNNCC 6 cut(s) 406, 1256, 1432, 2503, 3033, 3219
PstI CTGCAG 5 cut(s) 2133, 3274, 3694, 3838, 3888
PstNI CAGNNNCTG 3 cut(s) 3278, 3698, 3833
PsuI RGATCY 3 cut(s) 2676, 3189, 3357
PteI GCGCGC 1 cut(s) 3903
PvuII CAGCTG 2 cut(s) 3689, 3839
RsaI GTAC 3 cut(s) 906, 2558, 3492
RsaNI GTAC 3 cut(s) 905, 2557, 3491
RseI CAYNNNNRTG 3 cut(s) 329, 1703, 3108
SacI GAGCTC 3 cut(s) 36, 180, 3642
SacII CCGCGG 1 cut(s) 3379
SaqAI TTAA 8 cut(s) 708, 1574, 1989, 2199, 2238, 2595, 2603, 3009
SchI GAGTC 5 cut(s) 959, 1018, 1598, 1880, 2981
ScrFI CCNGG 6 cut(s) 1529, 1805, 1923, 2461, 2608, 3738
SduI GDGCHC 8 cut(s) 36, 180, 250, 645, 695, 3228, 3477, 3642
SexAI ACCWGGT 1 cut(s) 1921
SfaNI GCATC 7 cut(s) 2293, 2374, 3284, 3319, 3443, 3677, 3820
SfcI CTRYAG 7 cut(s) 1686, 2046, 2129, 3270, 3690, 3834, 3884
Sfr274I CTCGAG 1 cut(s) 2896
Sfr303I CCGCGG 1 cut(s) 3379
SfuI TTCGAA 1 cut(s) 458
SgrBI CCGCGG 1 cut(s) 3379
SinI GGWCC 4 cut(s) 160, 441, 580, 2502
SlaI CTCGAG 1 cut(s) 2896
SmiMI CAYNNNNRTG 3 cut(s) 329, 1703, 3108
SmlI CTYRAG 8 cut(s) 371, 1026, 1042, 2896, 3456, 3578, 3760, 3923
SmoI CTYRAG 8 cut(s) 371, 1026, 1042, 2896, 3456, 3578, 3760, 3923
SseBI AGGCCT 2 cut(s) 1309, 2044
SspI AATATT 1 cut(s) 3016
SspMI CTAG 8 cut(s) 1076, 1412, 1593, 1625, 2418, 2430, 3041, 3756
SstI GAGCTC 3 cut(s) 36, 180, 3642
StuI AGGCCT 2 cut(s) 1309, 2044
StyD4I CCNGG 6 cut(s) 1527, 1803, 1921, 2459, 2606, 3736
StyI CCWWGG 5 cut(s) 231, 330, 400, 893, 1778
TaiI ACGT 3 cut(s) 414, 1573, 2922
TaqI TCGA 9 cut(s) 36, 395, 458, 516, 645, 1195, 2897, 3170, 3600
TatI WGTACW 1 cut(s) 2556
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 8 cut(s) 708, 1574, 1989, 2199, 2238, 2595, 2603, 3009
Tru9I TTAA 8 cut(s) 708, 1574, 1989, 2199, 2238, 2595, 2603, 3009
TscAI CASTG 9 cut(s) 277, 1423, 1515, 1977, 2298, 2812, 3400, 3864, 3961
TseFI GTSAC 9 cut(s) 25, 826, 1078, 1218, 1298, 1771, 2479, 3800, 3956
Tsp45I GTSAC 9 cut(s) 25, 826, 1078, 1218, 1298, 1771, 2479, 3800, 3956
TspGWI ACGGA 7 cut(s) 44, 203, 712, 1715, 2086, 2494, 2840
TspRI CASTG 9 cut(s) 277, 1423, 1515, 1977, 2298, 2812, 3400, 3864, 3961
Van91I CCANNNNNTGG 1 cut(s) 1447
VpaK11BI GGWCC 4 cut(s) 160, 441, 580, 2502
XagI CCTNNNNNAGG 1 cut(s) 3039
XbaI TCTAGA 1 cut(s) 1624
XceI RCATGY 5 cut(s) 2197, 2224, 3745, 3770, 3933
XcmI CCANNNNNNNNNTGG 5 cut(s) 235, 1905, 1926, 2503, 3095
XhoI CTCGAG 1 cut(s) 2896
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 8 cut(s) 1076, 1412, 1593, 1625, 2418, 2430, 3041, 3756
Zsp2I ATGCAT 1 cut(s) 2226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.